def on_key_press(e):
# print("{} {}".format(e.text, e.key))
global pose_idx, is_playing, playing_dt, text_pose_idx, show_trailj
if e.text == ',':
set_pose(pose_idx - 1)
elif e.text == '.':
set_pose(pose_idx + 1)
elif e.text == '<':
set_pose(pose_idx - 10)
elif e.text == '>':
set_pose(pose_idx + 10)
elif e.key == 'Home':
set_pose(0)
elif e.key == 'End':
set_pose(max_pose_idx)
elif e.key == 'PageDown':
set_pose(pose_idx - 100)
elif e.key == 'PageUp':
set_pose(pose_idx + 100)
elif e.text == ' ':
if is_playing:
playing_timer.stop()
is_playing = False
else:
playing_timer.start(playing_dt)
is_playing = True
elif e.text == 'f':
text_pose_idx.visible = not text_pose_idx.visible
elif e.text == 't':
show_trailj = not show_trailj
for j in tj1: j.visible = show_trailj
elif e.text == 'P':
img = canvas.render(bgcolor='white')
img_fname = '{}{}{}{:08d}{}'.format('snapshot_', os.path.basename(pose_data_fname).split('.')[0], '_', pose_idx, '.png')
io.write_png(img_fname, img)
def on_key_press(ev):
print(ev.key.name)
if ev.key.name in 'S':
print("Saving...")
res = _screenshot()
vispy_file.write_png('config_space/{}_shot.png'.format(seq), res)
print("Done")
def update(event):
global view, f, F, vol, volume1, canvas, rec, rec_prefix, project_name, \
play
start = time()
if not play:
if rec:
play = True
if play:
maxF = camera_move(view.camera, f, F)
f += 1
if rec:
image = canvas.render()
io.write_png(f'{rec_prefix}/{project_name}/{project_name}_{f}.png',
image)
ETA = (time() - start) * (maxF - f
) # (time / frame) * frames remaining
ETA = (ETA / 60) / 60 # seconds to hours
ETA = np.modf(ETA)
ETA = int(ETA[1]), int(round(ETA[0] * 60))
ETA = str(ETA[0]) + ":" + str(ETA[1]).zfill(2)
print('saved frame', f, 'eta:', ETA)
def export_image(self):
image = self.canvas.render()
if self.canvas.domain:
name = self.canvas.domain.name()
else:
name = "tiling-(" + ','.join(map(str, self.canvas.orders)) + ")"
io.write_png("export/" + name + ".png", image)
def on_timer(self, event):
global mReadImages, mReadVideo, cap
global frameArr, mFrames
if self.texture: #Change on each frame 3-8-2019
if mReadImages:
print("self.texture?, frame", self.frame)
path = mRootPath + str(self.frame % 8) + ".png"
print(path)
#im = io.read_png(path) #mRootPath + str(self.frame%8)+".png")
im = io.imread(path) #mRootPath + str(self.frame%8)+".png")
#imread requires PIL or imageio
#directly write video frames from opencv numpy arrays?
self.program['u_texture1'] = gloo.Texture2D(im)
if mReadVideo: #read video
try:
if (self.cap):
#cv2.waitKey(35)
print("mReadVideo?")
#cap.set(cv2.CAP_PROP_POS_FRAMES, 0)
#ret, frame = self.cap.read(0)
#ret, frame = self.cap.read(self.frame)
ret, frame = cap.read() #self.frame) #global
if ret: cv2.imshow("cap", frame)
if ret:
self.program['u_texture1'] = gloo.Texture2D(frame)
else:
print("ret=?, frame=?", ret, frame)
self.program['u_texture1'] = gloo.Texture2D(
frameArr[self.frame % mFrames])
except (e):
print(e)
#print("slef.save=", self.save)
#sleep(5)
if self.save: #True: #self.save==1:
print("IN slef.save=", self.save)
i = self.render() #without OK?
io.write_png(str(self.frame) + ".png", i)
#no such: io.write_jpg(str(self.frame)+".jpg", i);
#self.mSlowDown = 1; #if not self.mSlowDown: self.mSlowDown = 1
self.program['iTime'] = event.elapsed * self.mSlowDown
self.program['iGlobalTime'] = event.elapsed
self.program['iDate'] = get_idate() # used in some shadertoy exs
#self.update()
self.frame += 1 #24-11-2018
print(self.frame)
self.frameTime.append((self.frame, event.elapsed))
if (self.frame % frame_divider == 0):
ln = len(self.frameTime)
fr1, t1 = self.frameTime[ln - 1]
fr2, t2 = self.frameTime[ln - 2]
fps = (fr1 - fr2) / (t1 - t2)
#print({:04.2f} fps, end=", ");
print(" %0.2f" % fps, end=", ")
sys.stdout.flush()
self.update()
def on_key_press(self, event):
print event.text
if event.text == 'q':
img = self.render()
io.write_png(
"../../render/render{:02d}.png".format(self.cur_frame), img)
if event.text == 'b':
self.point_size = self.point_size * 1.2
self.update_color_or_size()
if event.text == 's':
self.point_size = self.point_size / 1.2
self.update_color_or_size()
if event.text == 'j':
self.camera_length = self.camera_length * 2
self.update_camera()
if event.text == 'l':
self.camera_length = self.camera_length * 0.5
self.update_camera()
if event.text == 't':
self.show_camera = not self.show_camera
self.update_camera()
if event.key == 'Right':
if (self.cur_frame < self.num_frames - 1):
self.cur_frame += 1
print "frame{:d}".format(self.cur_frame)
self.transform_nodes()
print event.text + ' inside'
if event.key == 'Left':
if (self.cur_frame > 0):
self.cur_frame -= 1
print "frame{:d}".format(self.cur_frame)
self.transform_nodes()
# if event.text == 's':
# if(self.show_color):
# self.show_color = False
# self.update_color_or_size()
if event.text == 'c':
self.show_color = not self.show_color
self.update_color_or_size()
def write_img(self, img, filename=None):
if filename is None:
suffix = 0
filepat = "screen%d.png"
while os.path.exists(filepat % suffix):
suffix = suffix + 1
filename = filepat % suffix
io.write_png(filename, img)
print("Wrote " + filename)
def write_img(self, img, filename=None):
if filename is None:
suffix = 0;
filepat = "screen%d.png"
while os.path.exists(filepat % suffix):
suffix = suffix + 1
filename = filepat % suffix
io.write_png(filename, img)
print("Wrote " + filename)
def save_image(self):
path, category = QFileDialog.getSaveFileName(self,
"Save tree as image",
TREES_PATH,
"Png files (*.png)")
if not path.endswith(".png"):
path += ".png"
if path:
self.layout.canvas._smooth_enabled = False
image = self.layout.canvas.render()
self.layout.canvas._smooth_enabled = True
io.write_png(path, image)
def write(self):
image = _screenshot(alpha=True)
write_png('covers2/%s.png' % self.time, image)
data = {}
data.update(self.input_manager.smoothed_inputs)
data['time'] = self.time
data['definition'] = self.fractal.definition['name']
with open('covers2/%s.yml' % self.time, 'w') as f:
yaml.dump(data, stream=f)
print "Wrote image and data for %s" % self.time
def create_thumbnail(path, model, up="z"):
if path.endswith(".obj"):
up = "y"
canvas = vispy.scene.SceneCanvas(bgcolor='white')
canvas.unfreeze()
canvas.view = canvas.central_widget.add_view()
mesh = vispy.scene.visuals.Mesh(vertices=model.vertices, shading='flat', faces=model.faces)
canvas.view.add(mesh)
canvas.view.camera = vispy.scene.TurntableCamera(up=up, fov=30)
canvas.view.camera.depth_value = 0.5
img = canvas.render()
img_name = change_ext(path, '.png')
img_path = os.path.join(settings.THUMBS_ROOT, get_file_name(img_name))
if os.path.exists(img_path):
os.path.remove(img_path)
io.write_png(img_path, img)
canvas.close()
def test_make_png():
"""Test to ensure that make_png functions correctly."""
# Save random RGBA and RGB arrays onto disk as PNGs using make_png.
# Read them back with an image library and check whether the array
# saved is equal to the array read.
# Create random RGBA array as type ubyte
rgba_save = np.random.randint(256, size=(100, 100, 4)).astype(np.ubyte)
# Get rid of the alpha for RGB
rgb_save = rgba_save[:, :, :3]
# Output file should be in temp
png_out = op.join(temp_dir, 'random.png')
# write_png implicitly tests _make_png
for rgb_a in (rgba_save, rgb_save):
write_png(png_out, rgb_a)
rgb_a_read = read_png(png_out)
assert_array_equal(rgb_a, rgb_a_read)
def test_make_png():
""" Test to ensure that make_png functions correctly.
"""
# Save random RGBA and RGB arrays onto disk as PNGs using make_png.
# Read them back with an image library and check whether the array
# saved is equal to the array read.
# Create random RGBA array as type ubyte
rgba_save = np.random.randint(256, size=(100, 100, 4)).astype(np.ubyte)
# Get rid of the alpha for RGB
rgb_save = rgba_save[:, :, :3]
# Output file should be in temp
png_out = op.join(temp_dir, 'random.png')
# write_png implicitly tests _make_png
for rgb_a in (rgba_save, rgb_save):
write_png(png_out, rgb_a)
rgb_a_read = read_png(png_out)
assert_array_equal(rgb_a, rgb_a_read)
def on_key_press(event):
# modifiers = [key.name for key in event.modifiers]
# print('Key pressed - text: %r, key: %s, modifiers: %r' % (
# event.text, event.key.name, modifiers))
if event.key.name == 'A':
# print(dir(view.scene))
print(view.scene.children)
objects.append(
Ellipse3D([0, 0, 0],
parent=view.scene,
radius=2.5,
border_color='r',
color=(0, 0, 0, 0.5)))
if event.key.name == 'S':
filename = '{}-pyversor-screenshot.png'.format(
datetime.datetime.now().isoformat())
screenshot = canvas.render()
io.write_png(filename, screenshot)
print('Saved screenshot with filename: {}'.format(filename))
def view_contacts(pc, contacts):
canvas = vispy.scene.SceneCanvas(keys='interactive', show=True)
view = canvas.central_widget.add_view()
scatter = visuals.Markers()
scatter.set_data(pc, edge_color=None, face_color=(1, 1, 1, .5), size=5)
view.add(scatter)
scatter2 = visuals.Markers()
scatter2.set_data(contacts, edge_color=None, face_color=(1, 0, 0, 1), size=20)
view.add(scatter2)
view.camera = 'turntable'
axis = visuals.XYZAxis(parent=view.scene)
img = canvas.render()
io.write_png('images/pc_contacts.png', img)
send_image('images/pc_contacts.png')
if sys.flags.interactive != 1:
vispy.app.run()
def __init__(self, prime_numbers):
app.Canvas.__init__(self, keys='interactive')
self.prime_numbers = prime_numbers
# Create vertices
v_position, v_color, v_size = self.get_vertices()
self.program = gloo.Program(VERT_SHADER, FRAG_SHADER)
# Set uniform and attribute
self.program['a_color'] = gloo.VertexBuffer(v_color)
self.program['a_position'] = gloo.VertexBuffer(v_position)
self.program['a_size'] = gloo.VertexBuffer(v_size)
gloo.set_state(clear_color='white',
blend=True,
blend_func=('src_alpha', 'one_minus_src_alpha'))
img = self.render()
io.write_png('render.png', img)
self.show()
def view_pc(pc):
#
# Make a canvas and add simple view
#
canvas = vispy.scene.SceneCanvas(keys='interactive', show=True)
view = canvas.central_widget.add_view()
scatter = visuals.Markers()
scatter.set_data(pc, edge_color=None, face_color=(1, 1, 1, .5), size=5)
view.add(scatter)
view.camera = 'turntable'
axis = visuals.XYZAxis(parent=view.scene)
img = canvas.render()
io.write_png('images/pc.png', img)
send_image('images/pc.png')
if sys.flags.interactive != 1:
vispy.app.run()
x = raw_input('Use this PC? (y/n):')
return x
elif (args.puzzles or args.pics) and not os.path.isdir(passport_dir):
os.mkdir(passport_dir, mode=0o755)
if args.puzzles:
passport_context = Context(passport.to_dict())
puzzle_page = puzzle_template.render(passport_context)
if args.dry_run:
print(' index.html')
else:
with open(os.path.join(passport_dir, 'index.html'), 'w') as file:
file.write(puzzle_page)
if args.pics:
for orbit in orbits:
for dessin in orbit.dessins():
canvas.set_domain(dessin.domain)
image = canvas.render()
name = dessin.domain.name()
if args.dry_run:
print(2*' ' + name + '.png')
else:
io.write_png(os.path.join(passport_dir, name + '.png'), image)
puzzles.append(passport)
if len(puzzles) >= args.n_max:
break
list_template = engine.get_template('puzzles.html')
list_context = Context({'passports': [passport.to_dict() for passport in puzzles]})
list_page = list_template.render(list_context)
with open(os.path.join('docs', 'puzzles.html'), 'w') as file:
file.write(list_page)
def pcd_vispy(scans=None,
img=None,
boxes=None,
name=None,
index=0,
vis_size=(800, 600),
save_img=False,
visible=True,
no_gt=False,
multi_vis=False,
point_size=0.02):
if multi_vis:
canvas = vispy.scene.SceneCanvas(title=name,
keys='interactive',
size=vis_size,
show=True)
else:
canvas = vispy.scene.SceneCanvas(title=name,
keys='interactive',
size=vis_size,
show=visible)
grid = canvas.central_widget.add_grid()
vb = grid.add_view(row=0, col=0, row_span=2)
vb_img = grid.add_view(row=1, col=0)
vb.camera = 'turntable'
vb.camera.elevation = 90 # 21.0
vb.camera.center = (6.5, -0.5, 9.0)
vb.camera.azimuth = -90 # -75.5
vb.camera.scale_factor = 63 # 32.7
if scans is not None:
if not isinstance(scans, list):
pos = scans[:, :3]
scatter = visuals.Markers()
scatter.set_gl_state('translucent', depth_test=False)
scatter.set_data(pos,
edge_width=0,
face_color=(1, 1, 1, 1),
size=point_size,
scaling=True)
vb.add(scatter)
else:
pos = scans[0][:, :3]
scatter = visuals.Markers()
scatter.set_gl_state('translucent', depth_test=False)
scatter.set_data(pos,
edge_width=0,
face_color=(1, 1, 1, 1),
size=point_size,
scaling=True)
vb.add(scatter)
pos = scans[1][:, :3]
scatter = visuals.Markers()
scatter.set_gl_state('translucent', depth_test=False)
scatter.set_data(pos,
edge_width=0,
face_color=(0, 1, 1, 1),
size=point_size,
scaling=True)
vb.add(scatter)
axis = visuals.XYZAxis()
vb.add(axis)
if img is None:
img = np.zeros(shape=[1, 1, 3], dtype=np.float32)
image = visuals.Image(data=img, method='auto')
vb_img.camera = 'turntable'
vb_img.camera.elevation = -90.0
vb_img.camera.center = (2100, -380, -500)
vb_img.camera.azimuth = 0.0
vb_img.camera.scale_factor = 1500
vb_img.add(image)
if boxes is not None:
gt_indice = np.where(boxes["cls_rpn"] == 4)[0]
gt_cnt = len(gt_indice)
boxes_cnt = boxes["center"].shape[0]
i = 0
for k in range(boxes_cnt):
radio = max(boxes["score"][k] - 0.5, 0.005) * 2.0
color = (0, radio, 0, 1) # Green
if boxes["cls_rpn"][k] == 4: # gt boxes
i = i + 1
vsp_box = visuals.Box(depth=boxes["size"][k][0],
width=boxes["size"][k][1],
height=boxes["size"][k][2],
color=(0.3, 0.4, 0.0, 0.06),
edge_color='pink')
mesh_box = vsp_box.mesh.mesh_data
mesh_border_box = vsp_box.border.mesh_data
vertices = mesh_box.get_vertices()
center = np.array([
boxes["center"][k][0], boxes["center"][k][1],
boxes["center"][k][2]
],
dtype=np.float32)
vertices_roa_trans = box_rot_trans(vertices,
-boxes["yaw"][k][0],
center) #
mesh_border_box.set_vertices(vertices_roa_trans)
mesh_box.set_vertices(vertices_roa_trans)
vb.add(vsp_box)
if True:
text = visuals.Text(text='det: ({}/{})'.format(i, gt_cnt),
color='white',
face='OpenSans',
font_size=12,
pos=[
boxes["center"][k][0],
boxes["center"][k][1],
boxes["center"][k][2]
],
anchor_x='left',
anchor_y='top',
font_manager=None)
vb.add(text)
elif (boxes["cls_rpn"][k] + boxes["cls_cube"][k]
) == 0: # True negative cls rpn divided by cube
vb.add(
line_box(boxes["center"][k],
boxes["size"][k],
-boxes["yaw"][k],
color=color))
elif (boxes["cls_rpn"][k] + boxes["cls_cube"][k]
) == 1: # False negative cls rpn divided by cube
vb.add(
line_box(boxes["center"][k],
boxes["size"][k],
-boxes["yaw"][k],
color="red"))
elif (boxes["cls_rpn"][k] + boxes["cls_cube"][k]
) == 2: # False positive cls rpn divided by cube
vb.add(
line_box(boxes["center"][k],
boxes["size"][k],
-boxes["yaw"][k],
color="blue"))
elif (boxes["cls_rpn"][k] + boxes["cls_cube"][k]
) == 3: # True positive cls rpn divided by cube
vb.add(
line_box(boxes["center"][k],
boxes["size"][k],
-boxes["yaw"][k],
color="yellow"))
text = visuals.Text(
text=str(k),
color=color,
face='OpenSans',
font_size=12,
pos=[
boxes["center"][k][0] - boxes["size"][k][0] / 2,
boxes["center"][k][1] - boxes["size"][k][1] / 2,
boxes["center"][k][2] - boxes["size"][k][2] / 2
],
anchor_x='left',
anchor_y='top',
font_manager=None)
vb.add(text)
if save_img:
folder = path_add(cfg.TEST_RESULT, cfg.RANDOM_STR)
if not os.path.exists(folder):
os.makedirs(folder)
fileName = path_add(folder, str(index).zfill(6) + '.png')
res = canvas.render(bgcolor='black')[:, :, 0:3]
vispy_file.write_png(fileName, res)
@canvas.connect
def on_key_press(ev):
if ev.key.name in '+=':
a = vb.camera.get_state()
print(a)
if visible:
pass
vispy.app.run()
return canvas
def input_data(self,
scans=None,
img=None,
boxes=None,
index=0,
save_img=False,
no_gt=False):
self.canvas = vispy.scene.SceneCanvas(show=True)
self.grid = self.canvas.central_widget.add_grid()
self.vb = self.grid.add_view(row=0, col=0, row_span=2)
self.vb_img = self.grid.add_view(row=1, col=0)
self.vb.camera = 'turntable'
self.vb.camera.elevation = 90 #21.0
self.vb.camera.center = (6.5, -0.5, 9.0)
self.vb.camera.azimuth = -90 #-75.5
self.vb.camera.scale_factor = 63 #32.7
self.vb_img.camera = 'turntable'
self.vb_img.camera.elevation = -90.0
self.vb_img.camera.center = (2100, -380, -500)
self.vb_img.camera.azimuth = 0.0
self.vb_img.camera.scale_factor = 1500
pos = scans[:, 0:3]
scatter = visuals.Markers()
scatter.set_gl_state('translucent', depth_test=False)
scatter.set_data(pos,
edge_width=0,
face_color=(1, 1, 1, 1),
size=0.01,
scaling=True)
self.vb.add(scatter)
if img is None:
img = np.zeros(shape=[1, 1, 3], dtype=np.float32)
image = visuals.Image(data=img, method='auto')
self.vb_img.add(image)
if boxes is not None:
if len(boxes.shape) == 1:
boxes = boxes.reshape(1, -1)
gt_indice = np.where(boxes[:, -1] == 2)[0]
gt_cnt = len(gt_indice)
i = 0
for box in boxes:
radio = max(box[0] - 0.5, 0.005) * 2.0
color = (0, radio, 0, 1) # Green
if box[-1] == 4: # gt boxes
i = i + 1
vsp_box = visuals.Box(width=box[4],
depth=box[5],
height=box[6],
color=(0.6, 0.8, 0.0,
0.3)) #edge_color='yellow')
mesh_box = vsp_box.mesh.mesh_data
mesh_border_box = vsp_box.border.mesh_data
vertices = mesh_box.get_vertices()
center = np.array([box[1], box[2], box[3]],
dtype=np.float32)
vtcs = np.add(vertices, center)
mesh_border_box.set_vertices(vtcs)
mesh_box.set_vertices(vtcs)
self.vb.add(vsp_box)
if False:
text = visuals.Text(text='gt: ({}/{})'.format(
i, gt_cnt),
color='white',
face='OpenSans',
font_size=12,
pos=[box[1], box[2], box[3]],
anchor_x='left',
anchor_y='top',
font_manager=None)
self.vb.add(text)
if (box[-1] +
box[-2]) == 0: # True negative cls rpn divided by cube
self.vb.add(line_box(box, color=color))
if (box[-1] + box[-2]
) == 1: # False negative cls rpn divided by cube
self.vb.add(line_box(box, color='red'))
if (box[-1] + box[-2]
) == 2: # False positive cls rpn divided by cube
if no_gt:
self.vb.add(line_box(box, color='yellow'))
else:
self.vb.add(line_box(box, color='blue'))
if (box[-1] +
box[-2]) == 3: # True positive cls rpn divided by cube
self.vb.add(line_box(box, color='yellow'))
if save_img:
if not os.path.exists(folder):
os.makedirs(folder)
fileName = path_add(folder, str(index).zfill(6) + '.png')
res = self.canvas.render(bgcolor='black')[:, :, 0:3]
vispy_file.write_png(fileName, res)
@self.canvas.connect
def on_key_press(ev):
if ev.key.name in '+=':
a = self.vb.camera.get_state()
print(a)
def on_timer(self, event):
start = time()
if not hasattr(self, 'plotted'):
zoom_plot_ret = zoom_plot(self, [0, 4], [0, 1], first=True)
if type(zoom_plot_ret) is tuple:
self.plotted, self.rulers = zoom_plot_ret
else:
self.plotted = zoom_plot_ret
self.rulers = []
self.camera = self._plot_widgets[0].view.camera
else:
C = len(keyframes)
c = self.f // self.c_frames
z = (self.f / self.c_frames) % 1
#print(self.f, z, c, C)
if c >= C - 1:
if self.rec:
self.close()
self.done()
else:
# 0 1 2 3
# LRBA = left, right, bottom, aspect
LRBA = smooth(z, keyframes[c], keyframes[c + 1])
left = LRBA[0]
bottom = LRBA[2]
width = LRBA[1] - LRBA[0]
height = width * 1 / LRBA[3]
# left, bottom, width, height
rect = (left, bottom, width, height)
self.camera.rect = tuple(rect)
rect = self.camera.rect
rates = [rect.left, rect.right]
ends = [rect.bottom, rect.top]
zoom_plot(self.plotted, rates, ends)
if self.rec:
rec_prefix = self.rec['pre']
project_name = self.rec['name']
image = self.render()
io.write_png(
f'{rec_prefix}/{project_name}/{project_name}_{self.f}.png',
image)
ETA = (time() - start) * (
self.f_max - self.f) # (time / frame) * frames remaining
ETA = (ETA / 60) / 60 # seconds to hours
ETA = np.modf(ETA)
ETA = int(ETA[1]), int(round(ETA[0] * 60))
ETA = str(ETA[0]) + ":" + str(ETA[1]).zfill(2)
print(f'>>> FRAME: {project_name}_{self.f}.png, ETA', ETA, ',',
round(100 * self.f / self.f_max, 2), '% :', self.f, '/',
self.f_max)
self.f += 1
renderer = PlotRenderer()
consumer = Consumer(renderer)
render_executor = threading.Thread(target=renderer.executor)
consumer_executor = threading.Thread(target=consumer.consume)
render_executor.start()
consumer_executor.start()
fig = vp.Fig()
ax_left = fig[0, 0]
ax_right = fig[0, 1]
data = np.random.randn(10, 2)
ax_left.plot(data)
ax_right.histogram(data[1])
start = time.time_ns()
count = 0
while True:
count += 1
image = fig.render()
# io.imsave("wonderful.png",image)
io.write_png("wonderful.png", image)
# renderer.push(io._make_png, image, 0)
# io._make_png(image, level=0)
if (time.time_ns() - start) > 1e9:
print(f'Producer: {count} {renderer.queue_in.qsize()}', flush=True)
count = 0
start = time.time_ns()
def disconnected(self, URI):
print('Disconnected')
img = self.canvas.render()
io.write_png("01.png", img)
def cube(im_in, azimuth=30., elevation=45., name=None,
ext=ext, do_axis=True, show_label=True,
cube_label = {'x':'x', 'y':'y', 't':'t'},
colormap='gray', roll=-180., vmin=0., vmax=1.,
figsize=figsize, figpath=figpath, **kwargs):
"""
Visualization of the stimulus as a cube
"""
im = im_in.copy()
N_X, N_Y, N_frame = im.shape
fx, fy, ft = get_grids(N_X, N_Y, N_frame)
import numpy as np
from vispy import app, scene
try:
AffineTransform = scene.transforms.AffineTransform
except:
AffineTransform = scene.transforms.MatrixTransform
app.use_app('pyglet')
from vispy.util.transforms import perspective, translate, rotate
canvas = scene.SceneCanvas(size=figsize, bgcolor='white', dpi=450)
view = canvas.central_widget.add_view()
# frame = scene.visuals.Cube(size = (N_X/2, N_frame/2, N_Y/2), color=(0., 0., 0., 0.),
# edge_color='k',
# parent=view.scene)
for p in ([1, 1, 1, -1, 1, 1], [1, 1, -1, -1, 1, -1], [1, -1, 1, -1, -1, 1],[1, -1, -1, -1, -1, -1],
[1, 1, 1, 1, -1, 1], [-1, 1, 1, -1, -1, 1], [1, 1, -1, 1, -1, -1], [-1, 1, -1, -1, -1, -1],
[1, 1, 1, 1, 1, -1], [-1, 1, 1, -1, 1, -1], [1, -1, 1, 1, -1, -1], [-1, -1, 1, -1, -1, -1]):
# line = scene.visuals.Line(pos=np.array([[p[0]*N_Y/2, p[1]*N_X/2, p[2]*N_frame/2], [p[3]*N_Y/2, p[4]*N_X/2, p[5]*N_frame/2]]), color='black', parent=view.scene)
line = scene.visuals.Line(pos=np.array([[p[0]*N_X/2, p[1]*N_frame/2, p[2]*N_Y/2],
[p[3]*N_X/2, p[4]*N_frame/2, p[5]*N_Y/2]]), color='black', parent=view.scene)
opts = {'parent':view.scene, 'cmap':'grays', 'clim':(0., 1.)}
image_xy = scene.visuals.Image(np.rot90(im[:, :, 0], 3), **opts)
tr_xy = AffineTransform()
tr_xy.rotate(90, (1, 0, 0))
tr_xy.translate((-N_X/2, -N_frame/2, -N_Y/2))
image_xy.transform = tr_xy
image_xt = scene.visuals.Image(np.fliplr(im[:, -1, :]), **opts)
tr_xt = AffineTransform()
tr_xt.rotate(90, (0, 0, 1))
tr_xt.translate((N_X/2, -N_frame/2, N_Y/2))
image_xt.transform = tr_xt
image_yt = scene.visuals.Image(np.rot90(im[-1, :, :], 1), **opts)
tr_yt = AffineTransform()
tr_yt.rotate(90, (0, 1, 0))
tr_yt.translate((+N_X/2, -N_frame/2, N_Y/2))
image_yt.transform = tr_yt
if do_axis:
t = {}
for text in ['x', 'y', 't']:
t[text] = scene.visuals.Text(cube_label[text], parent=canvas.scene, face='Helvetica', color='black')
t[text].font_size = 8
t['x'].pos = canvas.size[0] // 3, canvas.size[1] - canvas.size[1] // 8
t['t'].pos = canvas.size[0] - canvas.size[0] // 5, canvas.size[1] - canvas.size[1] // 6
t['y'].pos = canvas.size[0] // 12, canvas.size[1] // 2
cam = scene.TurntableCamera(elevation=35, azimuth=30)
cam.fov = 45
cam.scale_factor = N_X * 1.7
if do_axis: margin = 1.3
else: margin = 1
cam.set_range((-N_X/2, N_X/2), (-N_Y/2*margin, N_Y/2/margin), (-N_frame/2, N_frame/2))
view.camera = cam
if not(name is None):
im = canvas.render(size=figsize)
app.quit()
import vispy.io as io
io.write_png(name + ext, im)
else:
app.quit()
return im
def visualize(z_in, azimuth=25., elevation=30.,
thresholds=[0.94, .89, .75, .5, .25, .1], opacities=[.9, .8, .7, .5, .2, .1],
# thresholds=[0.94, .89, .75], opacities=[.99, .7, .2],
# thresholds=[0.7, .5, .2], opacities=[.95, .5, .2],
fourier_label = {'f_x':'f_x', 'f_y':'f_y', 'f_t':'f_t'},
name=None, ext=ext, do_axis=True, do_grids=False, draw_projections=True,
colorbar=False, f_N=2., f_tN=2., figsize=figsize, figpath=figpath, **kwargs):
"""
Visualization of the Fourier spectrum by showing 3D contour plots at different thresholds
parameters
----------
z : envelope of the cloud
"""
z = z_in.copy()
N_X, N_Y, N_frame = z.shape
fx, fy, ft = get_grids(N_X, N_Y, N_frame)
# Normalize the amplitude.
z /= z.max()
from vispy import app, scene
try:
AffineTransform = scene.transforms.AffineTransform
except:
AffineTransform = scene.transforms.MatrixTransform
app.use_app('pyglet')
#from vispy.util.transforms import perspective, translate, rotate
from vispy.color import Color
transparent = Color(color='black', alpha=0.)
import colorsys
canvas = scene.SceneCanvas(size=figsize, bgcolor='white', dpi=450)
view = canvas.central_widget.add_view()
vol_data = np.rollaxis(np.rollaxis(z, 1), 2)
# volume = scene.visuals.Volume(vol_data, parent=view.scene)#frame)
center = scene.transforms.STTransform(translate=( -N_X/2, -N_Y/2, -N_frame/2))
# volume.transform = center
# volume.cmap = 'blues'
if draw_projections:
from vispy.color import Colormap
cm = Colormap([(1.0, 1.0, 1.0, 1.0), 'k'])
opts = {'parent':view.scene, 'cmap':cm, 'clim':(0., 1.)}
energy_xy = np.rot90(np.max(z, axis=2)[:, ::-1], 3)[:, ::-1]
fourier_xy = scene.visuals.Image(np.rot90(energy_xy), **opts)
tr_xy = AffineTransform()
tr_xy.rotate(90, (0, 0, 1))
tr_xy.translate((N_X/2, -N_Y/2, -N_frame/2))
fourier_xy.transform = tr_xy
energy_xt = np.rot90(np.max(z, axis=1)[:, ::-1], 3)[::-1, ::-1]
fourier_xt = scene.visuals.Image(energy_xt, **opts)
tr_xt = AffineTransform()
tr_xt.rotate(90, (1, 0, 0))
tr_xt.translate((-N_X/2, N_Y/2, -N_frame/2))
fourier_xt.transform = tr_xt
energy_yt = np.max(z, axis=0)#[:, ::-1]
fourier_yt = scene.visuals.Image(energy_yt, **opts)
tr_yt = AffineTransform()
tr_yt.rotate(90, (0, 1, 0))
tr_yt.translate((-N_X/2, -N_Y/2, N_frame/2))
fourier_yt.transform = tr_yt
# Generate iso-surfaces at different energy levels
surfaces = []
for i_, (threshold, opacity) in enumerate(list(zip(thresholds, opacities))):
surfaces.append(scene.visuals.Isosurface(z, level=threshold,
# color=Color(np.array(colorsys.hsv_to_rgb(1.*i_/len(thresholds), 1., 1.)), alpha=opacity),
color=Color(np.array(colorsys.hsv_to_rgb(.66, 1., 1.)), alpha=opacity),
shading='smooth', parent=view.scene)
)
surfaces[-1].transform = center
# Draw a sphere at the origin
axis = scene.visuals.XYZAxis(parent=view.scene)
for p in ([1, 1, 1, -1, 1, 1], [1, 1, -1, -1, 1, -1], [1, -1, 1, -1, -1, 1],[1, -1, -1, -1, -1, -1],
[1, 1, 1, 1, -1, 1], [-1, 1, 1, -1, -1, 1], [1, 1, -1, 1, -1, -1], [-1, 1, -1, -1, -1, -1],
[1, 1, 1, 1, 1, -1], [-1, 1, 1, -1, 1, -1], [1, -1, 1, 1, -1, -1], [-1, -1, 1, -1, -1, -1]):
line = scene.visuals.Line(pos=np.array([[p[0]*N_X/2, p[1]*N_Y/2, p[2]*N_frame/2], [p[3]*N_X/2, p[4]*N_Y/2, p[5]*N_frame/2]]), color='black', parent=view.scene)
axisX = scene.visuals.Line(pos=np.array([[0, -N_Y/2, 0], [0, N_Y/2, 0]]), color='red', parent=view.scene)
axisY = scene.visuals.Line(pos=np.array([[-N_X/2, 0, 0], [N_X/2, 0, 0]]), color='green', parent=view.scene)
axisZ = scene.visuals.Line(pos=np.array([[0, 0, -N_frame/2], [0, 0, N_frame/2]]), color='blue', parent=view.scene)
if do_axis:
t = {}
for text in ['f_x', 'f_y', 'f_t']:
t[text] = scene.visuals.Text(fourier_label[text], parent=canvas.scene, face='Helvetica', color='black')
t[text].font_size = 8
t['f_x'].pos = canvas.size[0] // 3, canvas.size[1] - canvas.size[1] // 8
t['f_y'].pos = canvas.size[0] - canvas.size[0] // 8, canvas.size[1] - canvas.size[1] // 6
t['f_t'].pos = canvas.size[0] // 8, canvas.size[1] // 2
cam = scene.TurntableCamera(elevation=elevation, azimuth=azimuth, up='z')
cam.fov = 48
cam.scale_factor = N_X * 1.8
if do_axis: margin = 1.35
else: margin = 1
cam.set_range((-N_X/2*margin, N_X/2/margin), (-N_Y/2*margin, N_Y/2/margin), (-N_frame/2*margin, N_frame/2/margin))
view.camera = cam
im = canvas.render(size=figsize)
app.quit()
if not(name is None):
import vispy.io as io
io.write_png(name + ext, im)
else:
return im
# Create a folder to store image frames
os.system("rm -rf imgs; rm -Rf video.mp4; mkdir imgs")
counter = 0
# Run some episodes
for num_episode in range(10): # runs for 10 episodes by default
obs = env.reset() # reset the environment; get the first observation
# sanity check to make sure the script is still running from CLI
print(num_episode)
done = False
while not done: # only reset when the environment says to
action, _states = model.predict(
obs, deterministic=True) # use model for movements
obs, reward, done, info = env.step(
action) # step model, gather new input
env.render(
) # render the image to the display, to allow for optional mouse input
# also save the image to an array
io.write_png("imgs/{0:05}.png".format(counter),
env.envs[0].renderer.canvas.render())
counter += 1
print("Creating video:")
os.system(
"ffmpeg -r 60 -i imgs/%05d.png -vcodec libx264 -y -an video.mp4 -vf \"pad=ceil(iw/2)*2:ceil(ih/2)*2\" -pix_fmt yuv420p && rm -rf imgs"
)
print("Video file created. See 'video.mp4' in script folder.")
def pcd_vispy_standard(scans=None,
img=None,
boxes=None,
name=None,
index=0,
vis_size=(800, 600),
save_img=False,
visible=True,
multi_vis=False,
point_size=0.02,
lidar_view_set=None):
if multi_vis:
canvas = vispy.scene.SceneCanvas(title=name,
keys='interactive',
size=vis_size,
show=True)
else:
canvas = vispy.scene.SceneCanvas(title=name,
keys='interactive',
size=vis_size,
show=visible)
grid = canvas.central_widget.add_grid()
vb = grid.add_view(row=0, col=0, row_span=2)
vb_img = grid.add_view(row=1, col=0)
if lidar_view_set is None:
vb.camera = 'turntable'
vb.camera.elevation = 90 # 21.0
vb.camera.center = (6.5, -0.5, 9.0)
vb.camera.azimuth = -90 # -75.5
vb.camera.scale_factor = 63 # 32.7
else:
vb.camera = 'turntable'
vb.camera.elevation = lidar_view_set['elevation'] # 21.0
vb.camera.center = lidar_view_set['center']
vb.camera.azimuth = lidar_view_set['azimuth']
vb.camera.scale_factor = lidar_view_set['scale_factor']
if scans is not None:
if not isinstance(scans, list):
pos = scans[:, :3]
scatter = visuals.Markers()
scatter.set_gl_state('translucent', depth_test=False)
scatter.set_data(pos,
edge_width=0,
face_color=(1, 1, 1, 1),
size=point_size,
scaling=True)
vb.add(scatter)
else:
pos = scans[0][:, :3]
scatter = visuals.Markers()
scatter.set_gl_state('translucent', depth_test=False)
scatter.set_data(pos,
edge_width=0,
face_color=(1, 1, 1, 1),
size=point_size,
scaling=True)
vb.add(scatter)
pos = scans[1][:, :3]
scatter = visuals.Markers()
scatter.set_gl_state('translucent', depth_test=False)
scatter.set_data(pos,
edge_width=0,
face_color=(0, 1, 1, 1),
size=0.1,
scaling=True)
vb.add(scatter)
axis = visuals.XYZAxis()
vb.add(axis)
if img is None:
img = np.zeros(shape=[1, 1, 3], dtype=np.float32)
image = visuals.Image(data=img, method='auto')
vb_img.camera = 'turntable'
vb_img.camera.elevation = -90.0
vb_img.camera.center = (1900, 160, -1300)
vb_img.camera.azimuth = 0.0
vb_img.camera.scale_factor = 1500
vb_img.add(image)
if boxes is not None:
if len(boxes.shape) == 1:
boxes = boxes.reshape(-1, boxes.shape[0])
# one box: type,xyz,lwh,yaw,[score,reserve1,reserve2]
for box in boxes:
if box[0] == 1: # type:car
vb.add(line_box_stand(box, color="yellow"))
elif box[0] == 2: # type:Perdestrain
vb.add(line_box_stand(box, color="red"))
elif box[0] == 3: # type:Cyclist
vb.add(line_box_stand(box, color="blue"))
elif box[0] == 4: # type:Van
vb.add(line_box_stand(box, color="pink"))
else:
vb.add(line_box_stand(box, color="green"))
if save_img:
folder = path_add(cfg.TEST_RESULT, cfg.RANDOM_STR)
if not os.path.exists(folder):
os.makedirs(folder)
fileName = path_add(folder, str(index).zfill(6) + '.png')
res = canvas.render(bgcolor='black')[:, :, 0:3]
vispy_file.write_png(fileName, res)
@canvas.connect
def on_key_press(ev):
if ev.key.name in '+=':
a = vb.camera.get_state()
print(a)
if visible:
pass
vispy.app.run()
return canvas
def visualize(z_in, azimuth=25., elevation=30.,
thresholds=[0.94, .89, .75, .5, .25, .1], opacities=[.9, .8, .7, .5, .2, .1],
# thresholds=[0.94, .89, .75], opacities=[.99, .7, .2],
# thresholds=[0.7, .5, .2], opacities=[.95, .5, .2],
fourier_label = {'f_x':'f_x', 'f_y':'f_y', 'f_t':'f_t'},
name=None, ext=ext, do_axis=True, do_grids=False, draw_projections=True,
colorbar=False, f_N=2., f_tN=2., figsize=figsize, **kwargs):
"""
Visualization of the Fourier spectrum by showing 3D contour plots at different thresholds
parameters
----------
z : envelope of the cloud
"""
if not(os.path.isdir(figpath)): os.mkdir(figpath)
z = z_in.copy()
N_X, N_Y, N_frame = z.shape
fx, fy, ft = get_grids(N_X, N_Y, N_frame)
# Normalize the amplitude.
z /= z.max()
from vispy import app, scene
app.use_app('pyglet')
#from vispy.util.transforms import perspective, translate, rotate
from vispy.color import Color
transparent = Color(color='black', alpha=0.)
import colorsys
canvas = scene.SceneCanvas(size=figsize, bgcolor='white', dpi=450)
view = canvas.central_widget.add_view()
vol_data = np.rollaxis(np.rollaxis(z, 1), 2)
# volume = scene.visuals.Volume(vol_data, parent=view.scene)#frame)
center = scene.transforms.STTransform(translate=( -N_X/2, -N_Y/2, -N_frame/2))
# volume.transform = center
# volume.cmap = 'blues'
if draw_projections:
from vispy.color import Colormap
cm = Colormap([(1.0, 1.0, 1.0, 1.0), 'k'])
opts = {'parent':view.scene, 'cmap':cm, 'clim':(0., 1.)}
energy_xy = np.rot90(np.max(z, axis=2)[:, ::-1], 3)
fourier_xy = scene.visuals.Image(np.rot90(energy_xy), **opts)
tr_xy = scene.transforms.MatrixTransform()
tr_xy.rotate(90, (0, 0, 1))
tr_xy.translate((N_X/2, -N_Y/2, -N_frame/2))
fourier_xy.transform = tr_xy
energy_xt = np.rot90(np.max(z, axis=1)[:, ::-1], 3)
fourier_xt = scene.visuals.Image(energy_xt, **opts)
tr_xt = scene.transforms.MatrixTransform()
tr_xt.rotate(90, (1, 0, 0))
tr_xt.translate((-N_X/2, N_Y/2, -N_frame/2))
fourier_xt.transform = tr_xt
energy_yt = np.max(z, axis=0)[:, ::-1]
fourier_yt = scene.visuals.Image(energy_yt, **opts)
tr_yt = scene.transforms.MatrixTransform()
tr_yt.rotate(90, (0, 1, 0))
tr_yt.translate((-N_X/2, -N_Y/2, N_frame/2))
fourier_yt.transform = tr_yt
# Generate iso-surfaces at different energy levels
surfaces = []
for i_, (threshold, opacity) in enumerate(zip(thresholds, opacities)):
surfaces.append(scene.visuals.Isosurface(z, level=threshold,
# color=Color(np.array(colorsys.hsv_to_rgb(1.*i_/len(thresholds), 1., 1.)), alpha=opacity),
color=Color(np.array(colorsys.hsv_to_rgb(.66, 1., 1.)), alpha=opacity),
shading='smooth', parent=view.scene)
)
surfaces[-1].transform = center
# Draw a sphere at the origin
axis = scene.visuals.XYZAxis(parent=view.scene)
for p in ([1, 1, 1, -1, 1, 1], [1, 1, -1, -1, 1, -1], [1, -1, 1, -1, -1, 1],[1, -1, -1, -1, -1, -1],
[1, 1, 1, 1, -1, 1], [-1, 1, 1, -1, -1, 1], [1, 1, -1, 1, -1, -1], [-1, 1, -1, -1, -1, -1],
[1, 1, 1, 1, 1, -1], [-1, 1, 1, -1, 1, -1], [1, -1, 1, 1, -1, -1], [-1, -1, 1, -1, -1, -1]):
line = scene.visuals.Line(pos=np.array([[p[0]*N_X/2, p[1]*N_Y/2, p[2]*N_frame/2], [p[3]*N_X/2, p[4]*N_Y/2, p[5]*N_frame/2]]), color='black', parent=view.scene)
axisX = scene.visuals.Line(pos=np.array([[0, -N_Y/2, 0], [0, N_Y/2, 0]]), color='red', parent=view.scene)
axisY = scene.visuals.Line(pos=np.array([[-N_X/2, 0, 0], [N_X/2, 0, 0]]), color='green', parent=view.scene)
axisZ = scene.visuals.Line(pos=np.array([[0, 0, -N_frame/2], [0, 0, N_frame/2]]), color='blue', parent=view.scene)
if do_axis:
t = {}
for text in ['f_x', 'f_y', 'f_t']:
t[text] = scene.visuals.Text(fourier_label[text], parent=canvas.scene, face='Helvetica', color='black')
t[text].font_size = 8
t['f_x'].pos = canvas.size[0] // 3, canvas.size[1] - canvas.size[1] // 8
t['f_y'].pos = canvas.size[0] - canvas.size[0] // 8, canvas.size[1] - canvas.size[1] // 6
t['f_t'].pos = canvas.size[0] // 8, canvas.size[1] // 2
cam = scene.TurntableCamera(elevation=elevation, azimuth=azimuth, up='z')
cam.fov = 48
cam.scale_factor = N_X * 1.8
if do_axis: margin = 1.35
else: margin = 1
cam.set_range((-N_X/2*margin, N_X/2/margin), (-N_Y/2*margin, N_Y/2/margin), (-N_frame/2*margin, N_frame/2/margin))
view.camera = cam
im = canvas.render(size=figsize)
app.quit()
if not(name is None):
import vispy.io as io
io.write_png(name + ext, im)
else:
return im
def on_key_press(self, event):
# Hold <Ctrl> to enter drag mode.
if keys.CONTROL in event.modifiers:
# TODO: I cannot get the mouse position within the key_press event ...
# so it is not yet implemented. The purpose of this event handler
# is simply trying to highlight the visual node when <Ctrl> is pressed
# but mouse is not moved (just nicer interactivity), so not very
# high priority now.
pass
# Press <Space> to reset camera.
if event.text == ' ':
self.camera.fov = self.fov
self.camera.azimuth = self.azimuth
self.camera.elevation = self.elevation
self.camera.set_range()
self.camera.scale_factor = self.scale_factor
self.camera.scale_factor /= self.zoom_factor
for child in self.view.children:
if type(child) == XYZAxis:
child._update_axis()
# Press <s> to save a screenshot.
if event.text == 's':
screenshot = _screenshot()
io.write_png(self.title + '.png', screenshot)
# Press <d> to toggle drag mode.
if event.text == 'd':
if not self.drag_mode:
self.drag_mode = True
self.camera.viewbox.events.mouse_move.disconnect(
self.camera.viewbox_mouse_event)
else:
self.drag_mode = False
self._exit_drag_mode()
self.camera.viewbox.events.mouse_move.connect(
self.camera.viewbox_mouse_event)
# Press <a> to get the parameters of all visual nodes.
if event.text == 'a':
print("===== All useful parameters ====")
# Canvas size.
print("Canvas size = {}".format(self.size))
# Collect camera parameters.
print("Camera:")
camera_state = self.camera.get_state()
for key, value in camera_state.items():
print(" - {} = {}".format(key, value))
print(" - {} = {}".format('zoom factor', self.zoom_factor))
# Collect slice parameters.
print("Slices:")
pos_dict = {'x': [], 'y': [], 'z': []}
for node in self.view.scene.children:
if type(node) == AxisAlignedImage:
pos = node.pos
if node.seismic_coord_system and node.axis in ['y', 'z']:
pos = node.limit[1] - pos # revert y and z axis
pos_dict[node.axis].append(pos)
for axis, pos in pos_dict.items():
print(" - {}: {}".format(axis, pos))
# Collect the axis legend parameters.
for node in self.view.children:
if type(node) == XYZAxis:
print("XYZAxis loc = {}".format(node.loc))
OSMESA_LIBRARY=/opt/osmesa_llvmpipe/lib/libOSMesa.so \
python examples/offscreen/simple_osmesa.py
"""
import vispy
vispy.use(app='osmesa') # noqa
import numpy as np
import vispy.plot as vp
import vispy.io as io
# Check the application correctly picked up osmesa
assert vispy.app.use_app().backend_name == 'osmesa', 'Not using OSMesa'
data = np.load(io.load_data_file('electrophys/iv_curve.npz'))['arr_0']
time = np.arange(0, data.shape[1], 1e-4)
fig = vp.Fig(size=(800, 800), show=False)
x = np.linspace(0, 10, 20)
y = np.cos(x)
line = fig[0, 0].plot((x, y), symbol='o', width=3, title='I/V Curve',
xlabel='Current (pA)', ylabel='Membrane Potential (mV)')
grid = vp.visuals.GridLines(color=(0, 0, 0, 0.5))
grid.set_gl_state('translucent')
fig[0, 0].view.add(grid)
fig.show()
img = fig.render()
io.write_png("osmesa.png", img)
edge_color=scan.sem_label_color[..., ::-1],
size=2, edge_width=2.0)
canvas = vispy.scene.SceneCanvas(keys='interactive', show=False, bgcolor='w', size=(1000, 1000))
camera = vispy.scene.cameras.TurntableCamera(elevation=0, azimuth=-30, roll=0)
view = canvas.central_widget.add_view()
view.add(scatter)
view.camera = camera
img_root = os.path.join(save_root, seqs[seq_idx], 'groundtruth')
os.makedirs(img_root, exist_ok=True)
img_path = os.path.join(img_root, '%06d' % frame_idx + '.png')
img = canvas.render()
print('Processing ' + img_path)
io.write_png(img_path, img[..., :3])
# save the visualizations of predictions
for frame_idx in range(200):
data_path = os.path.join(data_root, seqs[seq_idx] + '-' + '%06d'%frame_idx + '.npz')
scan.open_scan(data_path)
scan.colorize()
scatter = visuals.Markers()
scatter.set_data(scan.points,
face_color=scan.sem_pred_color[..., ::-1],
edge_color=scan.sem_pred_color[..., ::-1],
size=2, edge_width=2.0)
canvas = vispy.scene.SceneCanvas(keys='interactive', show=False, bgcolor='w', size=(1000, 1000))
camera = vispy.scene.cameras.TurntableCamera(elevation=0, azimuth=-30, roll=0)
def __init__(self, surface, bed, new_waves_class=None, size=(600, 600),
sky_img_path="D:\Documents\water-surface\water-surface/fluffy_clouds.png",
bed_img_path="D:\Documents\water-surface\water-surface/seabed.png",
depth_img_path="D:\Documents\water-surface\water-surface/depth.png"):
app.Canvas.__init__(self, size=size,
title="Water surface simulator")
# запрещаем текст глубины depth_test (все точки будут отрисовываться),
# запрещает смещивание цветов blend - цвет пикселя на экране равен gl_fragColor.
gloo.set_state(clear_color=(0, 0, 0, 1), depth_test=True, blend=True)
self.program = gloo.Program(vertex, fragment_triangle)
self.program_point = gloo.Program(vertex, fragment_point)
self.surface = surface
self.surface_class = new_waves_class
self.surface_wave_list = []
self.add_wave_center((self.size[0] / 2, self.size[1] / 2))
self.bed = bed
self.sky_img = io.read_png(sky_img_path)
self.bed_img = io.read_png(bed_img_path)
io.write_png(depth_img_path, self.bed.depth())
self.depth_img = io.read_png(depth_img_path)
# xy координаты точек сразу передаем шейдеру, они не будут изменятся со временем
self.program["a_position"] = self.surface.position()
self.program_point["a_position"] = self.surface.position()
self.program['u_sky_texture'] = gloo.Texture2D(
self.sky_img, wrapping='repeat', interpolation='linear')
self.program['u_bed_texture'] = gloo.Texture2D(
self.bed_img, wrapping='repeat', interpolation='linear')
self.program['u_bed_depth_texture'] = gloo.Texture2D(
self.depth_img, wrapping='repeat', interpolation='linear')
self.program_point["u_eye_height"] = self.program["u_eye_height"] = 3
self.program["u_alpha"] = 0.3
self.program["u_bed_depth"] = -0.5
self.program["u_sun_direction"] = self.normalize([0, 1, 0.1])
self.program["u_sun_diffused_color"] = [1, 0.8, 1]
self.program["u_sun_reflected_color"] = [1, 0.8, 0.6]
self.triangles = gloo.IndexBuffer(self.surface.triangulation())
# Set up GUI
self.camera = np.array([0, 0, 1])
self.up = np.array([0, 1, 0])
self.set_camera()
self.are_points_visible = False
self.drag_start = None
self.diffused_flag = True
self.reflected_flag = True
self.bed_flag = True
self.depth_flag = True
self.sky_flag = True
self.apply_flags()
# Run
self._timer = app.Timer('auto', connect=self.on_timer, start=True)
self.activate_zoom()
self.show()
# set up canvas
canvas = DomainCanvas(4, 4, 3, size=(400, 400))
# handle command line options
parser = ArgumentParser()
parser.add_argument('-n',
dest='n_max',
type=int,
action='store',
default=20)
parser.add_argument('--all', dest='partial', action='store_false')
parser.add_argument('--dry-run', dest='dry_run', action='store_true')
args = parser.parse_args()
# render dessins
n = 0
for orbit in hyp_orbits:
for dessin in orbit.dessins():
canvas.set_domain(dessin.domain)
image = canvas.render()
name = dessin.domain.name()
if args.dry_run:
print(name + '.png')
else:
io.write_png(os.path.join('batch-export', name + '.png'),
image)
n += 1
if args.partial and n >= args.n_max:
sys.exit(0)
def on_key_press(event):
if event.text == 's':
global still_num
# Stop preexisting animation
fade_out.stop()
usr_message.text = 'Saved still image'
usr_message.color = (1, 1, 1, 0)
# Write screen to .png
still = canvas.render()
still_name = str(seq) + "_" + str(still_num) + ".png"
io.write_png(still_name, still)
still_num = still_num + 1
# Display and fade saved message
fade_out.start()
if event.text == 'e':
global load_data
# Stop preexisting animation
fade_out.stop()
usr_message.color = (1, 1, 1, 0)
if load_data == None:
global fractal_data
# export data created in this program
file_name = "3D_Fractal_" + seq + "_steps" + str(steps)
np.save(file_name, fractal_data, allow_pickle=False)
# set user message
usr_message.text = 'Exported fractal'
else:
# set user message
usr_message.text = 'Cannot export data loaded into program'
# display user message
fade_out.start()
if event.text == 'l':
global volume, loaded_data_later
loaded_data_later = True
# Stop preexisting animation
fade_out.stop()
usr_message.color = (1, 1, 1, 0)
# open file dialog to select load data
root = tk.Tk()
root.withdraw()
load_data = filedialog.askopenfilename()
# make sure file extension is .npy
file_ext = load_data[len(load_data) - 3:]
if file_ext != 'npy':
usr_message.text = 'Can only load .npy files'
else:
usr_message.text = 'Fractal loaded'
# load fractal data
fractal_data = np.load(load_data)
# normalize data and get color map
fractal_3D, chaotic_boundary = normalize(fractal_data, 0.0)
fractal_map = getfractalcolormap(chaotic_boundary)
# erase old volume
volume.parent = None
# make new volume from normalized fractal data
volume = scene.visuals.Volume(fractal_3D,
clim=(0, 1),
method='translucent',
parent=view.scene,
threshold=0.225,
cmap=fractal_map,
emulate_texture=False)
volume.transform = scene.STTransform(translate=(-steps // 2,
-steps // 2,
-steps // 2))
# display user message
fade_out.start()
# create_movie.py
# Oliver Evans
# Clarkson University REU 2016
# Created: Thu 28 Jul 2016 12:18:30 AM EDT
# Last Edited: Thu 28 Jul 2016 12:25:26 AM EDT
# Create movie from working_visualization.py of constant rotation about z-axis
from working_visualization import *
from vispy import io
from vispy_volume import Canvas
c = Canvas(xlim, ylim, zlim, PP_3d, clim=None)
c.run()
c._view.camera.set_state({'elevation': 20})
for i in range(40):
c._view.camera.set_state({'azimuth': i * 9})
img = c.render()
io.write_png('volume_img/img/{:03d}.png'.format(i), img)
def run3DVisualizationIPM(ipmPoints,
centroids,
violations,
frame,
render=False):
'''
Takes all the world coordinates produced by the IPM method, and their color values and plots them in 3D space, using vispy. Also draws halo cylinders around 3D points corresponding to people centroids (from efficientdet bounding boxes). Also draws 3D lines (tubes) between the halos that represent a pair of people which are violating the 6' restriction.
Parameters:
ipmPoints (list): World coordinates with color, generated by the ipm method (x,y,z,[r,g,b])
centroids (list): A list of lists, where each inner list object is a 3D world point, representing the centroid of a person (found using the efficientdet bounding boxes), in format [x,y,z]
violations (list): A list of lists, where each inner list is a pair of integers, which are two indices in the bBoxes list representing a pair of people violating the 6' restriction. Formatted as [[pi1,pi2],[pi3,pi4]]
frame (int): frame number for the filename to save to
render (bool): whether or not to render canvas to a file
Returns:
'''
# Create canvas to draw everything
canvas = vispy.scene.SceneCanvas(keys='interactive',
show=True,
size=(1920, 1080))
view = canvas.central_widget.add_view()
# Unpack ipm points
ipmPos = []
ipmColor = []
for point in ipmPoints:
ipmPos.append([point[0], point[1], point[2]])
r = point[3][0]
g = point[3][1]
b = point[3][2]
ipmColor.append([r, g, b])
pos = np.array(ipmPos)
colors = np.array(ipmColor)
# 3D scatter plot to show depth map pointcloud
scatter = visuals.Markers()
scatter.antialias = 0
scatter.set_data(pos, edge_color=None, face_color=colors, size=5)
view.add(scatter)
# Draw cylinders around centroids
for point in centroids:
x, y, z = point
cyl_mesh = vispy.geometry.create_cylinder(10,
10,
radius=[500, 500],
length=50)
# Move cylinder to correct location in 3D space
# Make sure to negate the y value, otherwise everything will be mirrored
vertices = cyl_mesh.get_vertices()
center = np.array([x, -y, z + 150], dtype=np.float32)
vtcs = np.add(vertices, center)
cyl_mesh.set_vertices(vtcs)
cyl = visuals.Mesh(meshdata=cyl_mesh, color='g')
view.add(cyl)
# Draw lines between violating people
for pair in violations:
x1, y1, z1 = centroids[pair[0]]
x2, y2, z2 = centroids[pair[1]]
#lin = visuals.Line(pos=np.array([[x1,-y1,z1+1],[x2,-y2,z2+1]]), color='r', method='gl')
#view.add(lin)
tube = visuals.Tube(points=np.array([[x1, -y1, z1 + 150],
[x2, -y2, z2 + 150]]),
radius=50,
color='red')
view.add(tube)
view.camera = 'turntable' # or try 'arcball'
view.camera.elevation = 30.5
view.camera.azimuth = -78.5
view.camera.distance = 8250.000000000002
view.camera.fov = 60
# Add a colored 3D axis for orientation
axis = visuals.XYZAxis(parent=view.scene)
if (render):
img = canvas.render()
fname = "out_renders/IPM" + str(frame) + ".png"
io.write_png(fname, img)
else:
vispy.app.run()
def cube(im_in, azimuth=30., elevation=45., name=None,
ext=ext, do_axis=True, show_label=True,
cube_label = {'x':'x', 'y':'y', 't':'t'},
colormap='gray', roll=-180., vmin=0., vmax=1.,
figsize=figsize, **kwargs):
"""
Visualization of the stimulus as a cube
"""
if not(os.path.isdir(figpath)): os.mkdir(figpath)
im = im_in.copy()
N_X, N_Y, N_frame = im.shape
fx, fy, ft = get_grids(N_X, N_Y, N_frame)
import numpy as np
from vispy import app, scene
app.use_app('pyglet')
from vispy.util.transforms import perspective, translate, rotate
canvas = scene.SceneCanvas(size=figsize, bgcolor='white', dpi=450)
view = canvas.central_widget.add_view()
# frame = scene.visuals.Cube(size = (N_X/2, N_frame/2, N_Y/2), color=(0., 0., 0., 0.),
# edge_color='k',
# parent=view.scene)
for p in ([1, 1, 1, -1, 1, 1], [1, 1, -1, -1, 1, -1], [1, -1, 1, -1, -1, 1],[1, -1, -1, -1, -1, -1],
[1, 1, 1, 1, -1, 1], [-1, 1, 1, -1, -1, 1], [1, 1, -1, 1, -1, -1], [-1, 1, -1, -1, -1, -1],
[1, 1, 1, 1, 1, -1], [-1, 1, 1, -1, 1, -1], [1, -1, 1, 1, -1, -1], [-1, -1, 1, -1, -1, -1]):
# line = scene.visuals.Line(pos=np.array([[p[0]*N_Y/2, p[1]*N_X/2, p[2]*N_frame/2], [p[3]*N_Y/2, p[4]*N_X/2, p[5]*N_frame/2]]), color='black', parent=view.scene)
line = scene.visuals.Line(pos=np.array([[p[0]*N_X/2, p[1]*N_frame/2, p[2]*N_Y/2],
[p[3]*N_X/2, p[4]*N_frame/2, p[5]*N_Y/2]]), color='black', parent=view.scene)
opts = {'parent':view.scene, 'cmap':'grays', 'clim':(0., 1.)}
image_xy = scene.visuals.Image(np.rot90(im[:, :, 0], 3), **opts)
tr_xy = scene.transforms.MatrixTransform()
tr_xy.rotate(90, (1, 0, 0))
tr_xy.translate((-N_X/2, -N_frame/2, -N_Y/2))
image_xy.transform = tr_xy
image_xt = scene.visuals.Image(np.fliplr(im[:, -1, :]), **opts)
tr_xt = scene.transforms.MatrixTransform()
tr_xt.rotate(90, (0, 0, 1))
tr_xt.translate((N_X/2, -N_frame/2, N_Y/2))
image_xt.transform = tr_xt
image_yt = scene.visuals.Image(np.rot90(im[-1, :, :], 1), **opts)
tr_yt = scene.transforms.MatrixTransform()
tr_yt.rotate(90, (0, 1, 0))
tr_yt.translate((+N_X/2, -N_frame/2, N_Y/2))
image_yt.transform = tr_yt
if do_axis:
t = {}
for text in ['x', 'y', 't']:
t[text] = scene.visuals.Text(cube_label[text], parent=canvas.scene, face='Helvetica', color='black')
t[text].font_size = 8
t['x'].pos = canvas.size[0] // 3, canvas.size[1] - canvas.size[1] // 8
t['t'].pos = canvas.size[0] - canvas.size[0] // 5, canvas.size[1] - canvas.size[1] // 6
t['y'].pos = canvas.size[0] // 12, canvas.size[1] // 2
cam = scene.TurntableCamera(elevation=35, azimuth=30)
cam.fov = 45
cam.scale_factor = N_X * 1.7
if do_axis: margin = 1.3
else: margin = 1
cam.set_range((-N_X/2, N_X/2), (-N_Y/2*margin, N_Y/2/margin), (-N_frame/2, N_frame/2))
view.camera = cam
if not(name is None):
im = canvas.render(size=figsize)
app.quit()
import vispy.io as io
io.write_png(name + ext, im)
else:
app.quit()
return im
vispy.use(app='osmesa') # noqa
import numpy as np
import vispy.plot as vp
import vispy.io as io
# Check the application correctly picked up osmesa
assert vispy.app.use_app().backend_name == 'osmesa', 'Not using OSMesa'
data = np.load(io.load_data_file('electrophys/iv_curve.npz'))['arr_0']
time = np.arange(0, data.shape[1], 1e-4)
fig = vp.Fig(size=(800, 800), show=False)
x = np.linspace(0, 10, 20)
y = np.cos(x)
line = fig[0, 0].plot((x, y),
symbol='o',
width=3,
title='I/V Curve',
xlabel='Current (pA)',
ylabel='Membrane Potential (mV)')
grid = vp.visuals.GridLines(color=(0, 0, 0, 0.5))
grid.set_gl_state('translucent')
fig[0, 0].view.add(grid)
fig.show()
img = fig.render()
io.write_png("osmesa.png", img)