def convert_sql_to_xml(filename, id):
config = {"host": "localhost", "port": 3306, "user": "******", "passwd": "vistrailspwd", "db": "vistrails"}
try:
dbConnection = io.open_db_connection(config)
vistrail = io.open_vistrail_from_db(dbConnection, id)
io.setDBParameters(vistrail, config)
io.save_vistrail_to_xml(vistrail, filename)
io.close_db_connection(dbConnection)
except MySQLdb.Error, e:
print e
def convert_sql_to_xml(filename, id):
config = {'host': 'vistrails.sci.utah.edu',
'port': 3306,
'user': '******',
'passwd': '8edLj4',
'db': 'vistrails'}
try:
db_connection = io.open_db_connection(config)
vistrail = io.open_vistrail_from_db(db_connection, id)
io.save_vistrail_to_xml(vistrail, filename)
io.close_db_connection(db_connection)
except MySQLdb.Error, e:
print e
def convert_sql_to_xml(filename, id):
config = {'host': 'vistrails.sci.utah.edu',
'port': 3306,
'user': '******',
'passwd': '8edLj4',
'db': 'vistrails'}
try:
db_connection = io.open_db_connection(config)
vistrail = io.open_vistrail_from_db(db_connection, id)
io.save_vistrail_to_xml(vistrail, filename)
io.close_db_connection(db_connection)
except MySQLdb.Error, e:
print e
def convert_sql_to_xml(filename, id):
config = {'host': 'localhost',
'port': 3306,
'user': '******',
'passwd': 'vistrailspwd',
'db': 'vistrails'}
try:
dbConnection = io.open_db_connection(config)
vistrail = io.open_vistrail_from_db(dbConnection, id)
io.setDBParameters(vistrail, config)
io.save_vistrail_to_xml(vistrail, filename)
io.close_db_connection(dbConnection)
except MySQLdb.Error, e:
print e
def convert_sql_to_xml(filename, id):
config = {
'host': 'localhost',
'port': 3306,
'user': '******',
'passwd': 'vistrailspwd',
'db': 'vistrails'
}
try:
dbConnection = io.open_db_connection(config)
vistrail = io.open_vistrail_from_db(dbConnection, id)
io.setDBParameters(vistrail, config)
io.save_vistrail_to_xml(vistrail, filename)
io.close_db_connection(dbConnection)
except MySQLdb.Error, e:
print e
def convert_xml_to_sql(filename):
config = {"host": "localhost", "port": 3306, "user": "******", "passwd": "vistrailspwd", "db": "vistrails"}
try:
vistrail = io.open_vistrail_from_xml(filename)
dbConnection = io.open_db_connection(config)
print dbConnection.get_server_info()
print dbConnection.get_host_info()
print dbConnection.stat()
print str(dbConnection)
io.save_vistrail_to_db(vistrail, dbConnection)
io.close_db_connection(dbConnection)
print "db_id: ", vistrail.db_id
except Exception, e:
print e
def convert_xml_to_sql(filename):
config = {'host': 'localhost',
'port': 3306,
'user': '******',
'passwd': 'vistrailspwd',
'db': 'vistrails'}
try:
vistrail = io.open_vistrail_from_xml(filename)
dbConnection = io.open_db_connection(config)
print dbConnection.get_server_info()
print dbConnection.get_host_info()
print dbConnection.stat()
print str(dbConnection)
io.save_vistrail_to_db(vistrail, dbConnection)
io.close_db_connection(dbConnection)
print 'db_id: ', vistrail.db_id
except Exception, e:
print e
def convert_xml_to_sql(filename):
config = {'host': 'localhost',
'port': 3306,
'user': '******',
'passwd': 'vistrailspwd',
'db': 'vistrails'}
try:
vistrail = io.open_vistrail_from_xml(filename)
dbConnection = io.open_db_connection(config)
print dbConnection.get_server_info()
print dbConnection.get_host_info()
print dbConnection.stat()
print str(dbConnection)
io.save_vistrail_to_db(vistrail, dbConnection)
io.close_db_connection(dbConnection)
print 'db_id: ', vistrail.db_id
except Exception, e:
print e
def delete_from_db(config, obj_type, obj_id):
db_connection = io.open_db_connection(config)
io.delete_entity_from_db(db_connection, obj_type, obj_id)
io.close_db_connection(db_connection)
continue
io.save_vistrail_bundle_to_zip_xml(res, vt_name, local_tmp_dir)
# drop the old database
# recreate with the new version of the specs
io.setup_db_tables(db_connection, None, old_version)
# add the new data back
for filename in filenames:
(res, _) = io.open_vistrail_bundle_from_zip_xml(filename)
try:
io.save_vistrail_bundle_to_db(res, db_connection, 'with_ids')
except Exception, e:
import traceback
print filename, e, traceback.format_exc()
io.close_db_connection(db_connection)
if __name__ == '__main__':
import vistrails.core.application
more_options = {'v:': ('set new schema version', False, 'version'),
'd:': ('set temporary directory', False, 'directory'),
'e:': ('restore from directory', False, 'restore')
}
config, options = parse_db_cmd_line(sys.argv, more_options)
new_version = None
if options['v']:
new_version = options['v']
vistrails.core.application.init()
if 0 == offset:
select_part = 'SELECT count(0)'
command = ' '.join([select_part,from_part,where_part]) +';'
#print command
try:
c = db.cursor()
c.execute(command)
res = c.fetchall()
result= (result, res[0][0])
c.close()
except get_db_lib().Error, e:
msg = "Couldn't perform query on db (%d : %s)" % \
(e.args[0], e.args[1])
raise VistrailsDBException(msg)
close_db_connection(db)
return result
def runLogQuery(config, vistrail=None, version=None, fromTime=None, toTime=None,
user=None, completed=None, offset=0, limit=100, modules=[],
thumbs=None):
# returns list of workflow executions:
# (vistrail name, vistrail id, log id, workflow id, workflow name,
# execution id, start time, end time, user, completed, thumb)
result = []
db = open_db_connection(config)
select_part = \
"""SELECT DISTINCT v.name, v.id, w.entity_id,
w.parent_version, a1.value, w.id,
w.ts_start, w.ts_end, w.user, w.completed"""
from_part = \
continue
io.save_vistrail_bundle_to_zip_xml(res, vt_name, local_tmp_dir)
# drop the old database
# recreate with the new version of the specs
io.setup_db_tables(db_connection, None, old_version)
# add the new data back
for filename in filenames:
(res, _) = io.open_vistrail_bundle_from_zip_xml(filename)
try:
io.save_vistrail_bundle_to_db(res, db_connection, 'with_ids')
except Exception, e:
import traceback
print filename, e, traceback.format_exc()
io.close_db_connection(db_connection)
if __name__ == '__main__':
import vistrails.core.application
more_options = {'v:': ('set new schema version', False, 'version'),
'd:': ('set temporary directory', False, 'directory'),
'e:': ('restore from directory', False, 'restore')
}
config, options = parse_db_cmd_line(sys.argv, more_options)
new_version = None
if options['v']:
new_version = options['v']
vistrails.core.application.init()
def delete_from_db(config, obj_type, obj_id):
db_connection = io.open_db_connection(config)
io.delete_entity_from_db(db_connection, obj_type, obj_id)
io.close_db_connection(db_connection)