from __future__ import print_function from vivo2notld.definitions import definitions, list_definitions from vivo2notld.utility import execute, execute_list import argparse import codecs if __name__ == "__main__": parser = argparse.ArgumentParser() all_definitions = [] all_definitions.extend(definitions.keys()) all_definitions.extend(list_definitions.keys()) parser.add_argument("definition", choices=all_definitions) parser.add_argument("subject_namespace", help="For example, http://vivo.gwu.edu/individual/") parser.add_argument("subject_identifier", help="For example, n115") parser.add_argument("endpoint", help="Endpoint for SPARQL Query of VIVO instance,e.g., http://localhost/vivo/api/sparqlQuery.") parser.add_argument("username", help="Username for VIVO root.") parser.add_argument("password", help="Password for VIVO root.") parser.add_argument("--format", choices=["json", "yaml", "xml", "nt", "pretty-xml", "trix"], help="The format for serializing. Default is json.", default="json") parser.add_argument("--indent", default="4", type=int, help="Number of spaces to use for indents.") parser.add_argument("--file", help="Filepath to which to serialize.") parser.add_argument("--debug", action="store_true", help="Also output the query, result graph, and python object.") parser.add_argument("--offset", type=int, help="Offset for lists.") parser.add_argument("--limit", type=int, help="Limit for lists.") #Parse args = parser.parse_args()
"--namespace", default="http://vivo.mydomain.edu/individual/", help="Namespace for the subject. Default is http://vivo.mydomain.edu/individual/.", ) parser.add_argument("--identifier", help="Identifier for the subject, e.g., n123.") parser.add_argument( "--list-namespace", default="http://vivo.mydomain.edu/individual/", help="Namespace for the list subject. Default is http://vivo.mydomain.edu/individual/.", ) parser.add_argument("--list-identifier", help="Identifier for the list subject, e.g., n123.") parser.add_argument("--definition", default="person", choices=definitions.keys(), help="Default is person.") parser.add_argument( "--list-definition", default="person_summary_with_positions_in", choices=list_definitions.keys(), help="Default is person_summary_with_positions_in.", ) parser.add_argument("--limit", type=int, help="List limit.") parser.add_argument("--offset", type=int, help="List offset.") # Parse args = parser.parse_args() app.debug = args.debug app.secret_key = "vivo2notld" default_definition = args.definition default_list_definition = args.list_definition default_subject_namespace = args.namespace default_subject_identifier = args.identifier