def test_auc_perf_metric(self):
np.random.seed(1)
groundtruths = np.random.normal(0, 1.0, [4, 10]) + np.tile(np.array([1, 2, 3, 4]), [10, 1]).T
predictions = [1, 2, 3, 4]
metric = AucPerfMetric(groundtruths, predictions)
result = metric.evaluate()
self.assertAlmostEqual(result['score'], 0.9375, places=6)
self.assertAlmostEqual(result['AUC_BW'], 0.9999999999999999, places=6)
self.assertAlmostEqual(result['AUC_DS'], 0.9375, places=6)
self.assertAlmostEqual(result['CC_0'], 1.0, places=6)
self.assertAlmostEqual(result['THR'], 3.0, places=6)
def get_stats(cls, ys_label, ys_label_pred, **kwargs):
# cannot have None
assert all(x is not None for x in ys_label)
assert all(x is not None for x in ys_label_pred)
# RMSE
rmse = RmsePerfMetric(ys_label, ys_label_pred) \
.evaluate(enable_mapping=True)['score']
# spearman
srcc = SrccPerfMetric(ys_label, ys_label_pred) \
.evaluate(enable_mapping=True)['score']
# pearson
pcc = PccPerfMetric(ys_label, ys_label_pred) \
.evaluate(enable_mapping=True)['score']
# kendall
kendall = KendallPerfMetric(ys_label, ys_label_pred) \
.evaluate(enable_mapping=True)['score']
stats = {'RMSE': rmse,
'SRCC': srcc,
'PCC': pcc,
'KENDALL': kendall,
'ys_label': list(ys_label),
'ys_label_pred': list(ys_label_pred)}
ys_label_raw = kwargs['ys_label_raw'] if 'ys_label_raw' in kwargs else None
if ys_label_raw is not None:
try:
# AUC
auc = AucPerfMetric(ys_label_raw, ys_label_pred) \
.evaluate()['score']
stats['AUC'] = auc
except TypeError: # AUC would not work with dictionary-style dataset
stats['AUC'] = float('nan')
try:
# ResPow
respow = ResolvingPowerPerfMetric(ys_label_raw, ys_label_pred) \
.evaluate()['score']
stats['ResPow'] = respow
except TypeError: # ResPow would not work with dictionary-style dataset
stats['ResPow'] = float('nan')
if 'ys_label_stddev' in kwargs and 'ys_label_stddev' and kwargs['ys_label_stddev'] is not None:
stats['ys_label_stddev'] = kwargs['ys_label_stddev']
return stats
def test_auc_perf_multiple_metrics(self):
np.random.seed(1)
groundtruths = np.random.normal(0, 1.0, [4, 10]) + np.tile(np.array([1, 2, 3, 4]), [10, 1]).T
predictions = [[1, 2, 3, 4], [3, 1, 2, 4]]
metric = AucPerfMetric(groundtruths, predictions)
result = metric.evaluate()
self.assertAlmostEqual(result['score'][0], 0.9999999999999999, places=6)
self.assertAlmostEqual(result['AUC_BW'][0], 0.9999999999999999, places=6)
self.assertAlmostEqual(result['AUC_DS'][0], 0.9375, places=6)
self.assertAlmostEqual(result['CC_0'][0], 1.0, places=6)
self.assertAlmostEqual(result['THR'][0], 1.0, places=6)
self.assertAlmostEqual(result['score'][1], 0.8125, places=6)
self.assertAlmostEqual(result['AUC_BW'][1], 0.8125, places=6)
self.assertAlmostEqual(result['AUC_DS'][1], 0.6250, places=6)
self.assertAlmostEqual(result['CC_0'][1], 0.75, places=6)
self.assertAlmostEqual(result['THR'][1], 2, places=6)
self.assertAlmostEqual(result['pDS_DL'][0, 1], 0.02746864, places=6)
self.assertAlmostEqual(result['pBW_DL'][0, 1], 0.06136883, places=6)
self.assertAlmostEqual(result['pCC0_b'][0, 1], 0.03250944, places=6)