def setupLayers( self ):
layers = []
self.translationsrc = self.mainOperator.TranslationVectorsDisplay
translationLayer = self.createStandardLayerFromSlot( self.translationsrc )
translationLayer.name = "Translation Vector"
translationLayer.opacity = 0.8
translationLayer.visible = False
layers.append(translationLayer)
ct = colortables.create_default_8bit()
ct[0] = QColor(0,0,0,0).rgba() # make 0 transparent
ct[1] = QColor(0,255,0,255).rgba() # foreground is green
self.warpedSrc = LazyflowSource( self.mainOperator.WarpedImage )
warpedLayer = ColortableLayer( self.warpedSrc, ct )
warpedLayer.name = "Translation Corrected Binary Image"
warpedLayer.visible = False
warpedLayer.opacity = 0.4
layers.append(warpedLayer)
ct = colortables.create_default_8bit()
ct[0] = QColor(0,0,0,0).rgba() # make 0 transparent
ct[1] = QColor(255,0,0,255).rgba() # foreground is read
self.binarySrc = LazyflowSource( self.mainOperator.BinaryImage )
binaryLayer = ColortableLayer( self.binarySrc, ct )
binaryLayer.name = "Binary Image"
binaryLayer.visible = True
binaryLayer.opacity = 0.8
layers.append(binaryLayer)
## raw data layer
self.rawsrc = LazyflowSource( self.mainOperator.RawImage )
rawLayer = GrayscaleLayer( self.rawsrc )
rawLayer.name = "Raw Image"
layers.insert( len(layers), rawLayer )
if self.topLevelOperatorView.TranslationVectors.meta.shape:
self.editor.dataShape = self.topLevelOperatorView.TranslationVectors.meta.shape
self.topLevelOperatorView.RawImage.notifyReady( self._onReady )
self.topLevelOperatorView.RawImage.notifyMetaChanged( self._onMetaChanged )
self._onParametersChanged()
self._drawer.methodBox.currentIndexChanged.connect(self._onMethodChanged)
self._drawer.templateSizeBox.valueChanged.connect(self._onMethodChanged)
self._drawer.maxTranslationBox.valueChanged.connect(self._onMethodChanged)
self._drawer.maxDiffValsBox.valueChanged.connect(self._onMethodChanged)
return layers
def setupLayers(self):
layers = []
if "MergerOutput" in self.topLevelOperatorView.outputs and self.topLevelOperatorView.MergerOutput.ready(
):
ct = colortables.create_default_8bit()
for i in range(7):
ct[i] = self.mergerColors[i].rgba()
self.mergersrc = LazyflowSource(
self.topLevelOperatorView.MergerOutput)
mergerLayer = ColortableLayer(self.mergersrc, ct)
mergerLayer.name = "Merger"
mergerLayer.visible = True
layers.append(mergerLayer)
ct = colortables.create_random_16bit()
ct[0] = QColor(0, 0, 0, 0).rgba() # make 0 transparent
ct[1] = QColor(128, 128, 128, 255).rgba(
) # misdetections have id 1 and will be indicated by grey
if self.topLevelOperatorView.CachedOutput.ready():
self.trackingsrc = LazyflowSource(
self.topLevelOperatorView.CachedOutput)
trackingLayer = ColortableLayer(self.trackingsrc, ct)
trackingLayer.name = "Tracking"
trackingLayer.visible = True
trackingLayer.opacity = 1.0
layers.append(trackingLayer)
elif self.topLevelOperatorView.zeroProvider.Output.ready():
# provide zeros while waiting for the tracking result
self.trackingsrc = LazyflowSource(
self.topLevelOperatorView.zeroProvider.Output)
trackingLayer = ColortableLayer(self.trackingsrc, ct)
trackingLayer.name = "Tracking"
trackingLayer.visible = True
trackingLayer.opacity = 1.0
layers.append(trackingLayer)
if self.topLevelOperatorView.LabelImage.ready():
self.objectssrc = LazyflowSource(
self.topLevelOperatorView.LabelImage)
ct = colortables.create_random_16bit()
ct[0] = QColor(0, 0, 0, 0).rgba() # make 0 transparent
objLayer = ColortableLayer(self.objectssrc, ct)
objLayer.name = "Objects"
objLayer.opacity = 1.0
objLayer.visible = True
layers.append(objLayer)
if self.mainOperator.RawImage.ready():
self.rawsrc = None
self.rawsrc = LazyflowSource(self.mainOperator.RawImage)
rawLayer = GrayscaleLayer(self.rawsrc)
rawLayer.name = "Raw"
layers.insert(len(layers), rawLayer)
if self.topLevelOperatorView.LabelImage.meta.shape:
self.editor.dataShape = self.topLevelOperatorView.LabelImage.meta.shape
maxt = self.topLevelOperatorView.LabelImage.meta.shape[0] - 1
maxx = self.topLevelOperatorView.LabelImage.meta.shape[1] - 1
maxy = self.topLevelOperatorView.LabelImage.meta.shape[2] - 1
maxz = self.topLevelOperatorView.LabelImage.meta.shape[3] - 1
if not self.mainOperator.Parameters.ready():
raise Exception("Parameter slot is not ready")
parameters = self.mainOperator.Parameters.value
self._setRanges()
if 'size_range' in parameters:
self._drawer.to_size.setValue(parameters['size_range'][1] - 1)
self._drawer.from_size.setValue(parameters['size_range'][0])
else:
self._drawer.from_size.setValue(0)
self._drawer.to_size.setValue(10000)
if 'x_range' in parameters:
self._drawer.to_x.setValue(parameters['x_range'][1] - 1)
self._drawer.from_x.setValue(parameters['x_range'][0])
else:
self._drawer.from_x.setValue(0)
self._drawer.to_x.setValue(maxx)
if 'y_range' in parameters:
self._drawer.to_y.setValue(parameters['y_range'][1] - 1)
self._drawer.from_y.setValue(parameters['y_range'][0])
else:
self._drawer.from_y.setValue(0)
self._drawer.to_y.setValue(maxy)
if 'z_range' in parameters:
self._drawer.to_z.setValue(parameters['z_range'][1] - 1)
self._drawer.from_z.setValue(parameters['z_range'][0])
else:
self._drawer.from_z.setValue(0)
self._drawer.to_z.setValue(maxz)
if 'time_range' in parameters:
self._drawer.to_time.setValue(parameters['time_range'][1])
self._drawer.from_time.setValue(parameters['time_range'][0])
else:
self._drawer.from_time.setValue(0)
self._drawer.to_time.setValue(maxt)
if 'scales' in parameters:
self._drawer.x_scale.setValue(parameters['scales'][0])
self._drawer.y_scale.setValue(parameters['scales'][1])
self._drawer.z_scale.setValue(parameters['scales'][2])
else:
self._drawer.x_scale.setValue(1)
self._drawer.y_scale.setValue(1)
self._drawer.z_scale.setValue(1)
self.topLevelOperatorView.RawImage.notifyReady(self._onReady)
self.topLevelOperatorView.RawImage.notifyMetaChanged(
self._onMetaChanged)
return layers
def setupLayers( self ):
layers = []
if "MergerOutput" in self.topLevelOperatorView.outputs:
ct = colortables.create_default_8bit()
for i in range(7):
ct[i] = self.mergerColors[i].rgba()
if self.topLevelOperatorView.MergerCachedOutput.ready():
self.mergersrc = LazyflowSource( self.topLevelOperatorView.MergerCachedOutput )
else:
self.mergersrc = LazyflowSource( self.topLevelOperatorView.ZeroOutput )
mergerLayer = ColortableLayer( self.mergersrc, ct )
mergerLayer.name = "Merger"
mergerLayer.visible = True
layers.append(mergerLayer)
ct = colortables.create_random_16bit()
ct[0] = QColor(0,0,0,0).rgba() # make 0 transparent
ct[1] = QColor(128,128,128,255).rgba() # misdetections have id 1 and will be indicated by grey
if self.topLevelOperatorView.CachedOutput.ready():
self.trackingsrc = LazyflowSource( self.topLevelOperatorView.CachedOutput )
trackingLayer = ColortableLayer( self.trackingsrc, ct )
trackingLayer.name = "Tracking"
trackingLayer.visible = True
trackingLayer.opacity = 1.0
layers.append(trackingLayer)
elif self.topLevelOperatorView.zeroProvider.Output.ready():
# provide zeros while waiting for the tracking result
self.trackingsrc = LazyflowSource( self.topLevelOperatorView.zeroProvider.Output )
trackingLayer = ColortableLayer( self.trackingsrc, ct )
trackingLayer.name = "Tracking"
trackingLayer.visible = True
trackingLayer.opacity = 1.0
layers.append(trackingLayer)
if self.topLevelOperatorView.LabelImage.ready():
self.objectssrc = LazyflowSource( self.topLevelOperatorView.LabelImage )
ct = colortables.create_random_16bit()
ct[0] = QColor(0,0,0,0).rgba() # make 0 transparent
objLayer = ColortableLayer( self.objectssrc, ct )
objLayer.name = "Objects"
objLayer.opacity = 1.0
objLayer.visible = True
layers.append(objLayer)
if self.mainOperator.RawImage.ready():
rawLayer = self.createStandardLayerFromSlot(self.mainOperator.RawImage)
rawLayer.name = "Raw"
layers.insert( len(layers), rawLayer )
if self.topLevelOperatorView.LabelImage.meta.shape:
self.editor.dataShape = self.topLevelOperatorView.LabelImage.meta.shape
maxt = self.topLevelOperatorView.LabelImage.meta.shape[0] - 1
maxx = self.topLevelOperatorView.LabelImage.meta.shape[1] - 1
maxy = self.topLevelOperatorView.LabelImage.meta.shape[2] - 1
maxz = self.topLevelOperatorView.LabelImage.meta.shape[3] - 1
if not self.mainOperator.Parameters.ready():
raise Exception("Parameter slot is not ready")
parameters = self.mainOperator.Parameters.value
self._setRanges()
if 'size_range' in parameters:
self._drawer.to_size.setValue(parameters['size_range'][1]-1)
self._drawer.from_size.setValue(parameters['size_range'][0])
else:
self._drawer.from_size.setValue(0)
self._drawer.to_size.setValue(10000)
if 'x_range' in parameters:
self._drawer.to_x.setValue(parameters['x_range'][1]-1)
self._drawer.from_x.setValue(parameters['x_range'][0])
else:
self._drawer.from_x.setValue(0)
self._drawer.to_x.setValue(maxx)
if 'y_range' in parameters:
self._drawer.to_y.setValue(parameters['y_range'][1]-1)
self._drawer.from_y.setValue(parameters['y_range'][0])
else:
self._drawer.from_y.setValue(0)
self._drawer.to_y.setValue(maxy)
if 'z_range' in parameters:
self._drawer.to_z.setValue(parameters['z_range'][1]-1)
self._drawer.from_z.setValue(parameters['z_range'][0])
else:
self._drawer.from_z.setValue(0)
self._drawer.to_z.setValue(maxz)
if 'time_range' in parameters:
self._drawer.to_time.setValue(parameters['time_range'][1])
self._drawer.from_time.setValue(parameters['time_range'][0])
else:
self._drawer.from_time.setValue(0)
self._drawer.to_time.setValue(maxt)
if 'scales' in parameters:
self._drawer.x_scale.setValue(parameters['scales'][0])
self._drawer.y_scale.setValue(parameters['scales'][1])
self._drawer.z_scale.setValue(parameters['scales'][2])
else:
self._drawer.x_scale.setValue(1)
self._drawer.y_scale.setValue(1)
self._drawer.z_scale.setValue(1)
return layers
