def AnisotropicFilter(self,
image,
num_iterations,
diffusion_threshold,
diffusion_factor,
faces_on=True,
edges_on=True,
corners_on=True):
"""Returns a edge-preserving smoothed version of image"""
image.SetReleaseDataFlag(1)
_filter = vtk.vtkImageAnisotropicDiffusion3D()
_filter.SetNumberOfIterations(int(num_iterations))
_filter.SetDiffusionThreshold(float(diffusion_threshold))
_filter.SetDiffusionFactor(float(diffusion_factor))
_filter.SetFaces(int(faces_on))
_filter.SetEdges(int(edges_on))
_filter.SetCorners(int(corners_on))
# we need this here because there are two paths into this routine
if isinstance(image, MVImage.MVImage):
real_image = image.GetRealImage()
else:
real_image = image
_filter.SetInput(real_image)
_filter.SetProgressText("Smoothing image...")
_filter.AddObserver('ProgressEvent', self.HandleVTKProgressEvent)
logging.info("Anisotropic filter applied")
_filter.Update()
return MVImage.MVImage(_filter.GetOutputPort(), input=image)
def AnisotropicFilter(self, image, num_iterations, diffusion_threshold, diffusion_factor, faces_on=True,
edges_on=True, corners_on=True):
"""Returns a edge-preserving smoothed version of image"""
image.SetReleaseDataFlag(1)
_filter = vtk.vtkImageAnisotropicDiffusion3D()
_filter.SetNumberOfIterations(int(num_iterations))
_filter.SetDiffusionThreshold(float(diffusion_threshold))
_filter.SetDiffusionFactor(float(diffusion_factor))
_filter.SetFaces(int(faces_on))
_filter.SetEdges(int(edges_on))
_filter.SetCorners(int(corners_on))
# we need this here because there are two paths into this routine
if isinstance(image, MVImage.MVImage):
real_image = image.GetRealImage()
else:
real_image = image
_filter.SetInput(real_image)
_filter.SetProgressText("Smoothing image...")
_filter.AddObserver('ProgressEvent', self.HandleVTKProgressEvent)
logging.info("Anisotropic filter applied")
_filter.Update()
return MVImage.MVImage(_filter.GetOutputPort(), input=image)
def __init__(self, module_manager):
SimpleVTKClassModuleBase.__init__(
self, module_manager,
vtk.vtkImageAnisotropicDiffusion3D(), 'Processing.',
('vtkImageData',), ('vtkImageData',),
replaceDoc=True,
inputFunctions=None, outputFunctions=None)
def __init__(self, module_manager):
SimpleVTKClassModuleBase.__init__(self,
module_manager,
vtk.vtkImageAnisotropicDiffusion3D(),
'Processing.', ('vtkImageData', ),
('vtkImageData', ),
replaceDoc=True,
inputFunctions=None,
outputFunctions=None)
def __init__(self):
"""
Initialization
"""
ProcessingFilter.ProcessingFilter.__init__(self, (1, 1))
self.vtkfilter = vtk.vtkImageAnisotropicDiffusion3D()
self.eventDesc = "Performing edge preserving smoothing (anisotropic diffusion)"
self.vtkfilter.AddObserver('ProgressEvent', lib.messenger.send)
lib.messenger.connect(self.vtkfilter, "ProgressEvent", self.updateProgress)
self.descs = {"Faces": "Faces", "Corners": "Corners", "Edges": "Edges",
"CentralDiff": "Central difference", "Gradient": "Gradient to neighbor",
"DiffThreshold": "Diffusion threshold:", "DiffFactor": "Diffusion factor:"}
self.filterDesc = "Performs anisotropic diffusion inside the neighborhood that fulfills given parameters\nInput: Grayscale image\nOutput: Grayscale image"
#!/usr/bin/env python
import vtk
from vtk.test import Testing
from vtk.util.misc import vtkGetDataRoot
VTK_DATA_ROOT = vtkGetDataRoot()
# Diffuses to 26 neighbors if difference is below threshold.
# Image pipeline
reader = vtk.vtkImageReader()
reader.SetDataByteOrderToLittleEndian()
reader.SetDataExtent(0, 63, 0, 63, 1, 93)
reader.SetFilePrefix("" + str(VTK_DATA_ROOT) + "/Data/headsq/quarter")
reader.SetDataMask(0x7fff)
reader.SetDataSpacing(1, 1, 2)
diffusion = vtk.vtkImageAnisotropicDiffusion3D()
diffusion.SetInputConnection(reader.GetOutputPort())
diffusion.SetDiffusionFactor(1.0)
diffusion.SetDiffusionThreshold(100.0)
diffusion.SetNumberOfIterations(5)
diffusion.GetExecutive().SetReleaseDataFlag(0, 0)
viewer = vtk.vtkImageViewer()
#viewer DebugOn
viewer.SetInputConnection(diffusion.GetOutputPort())
viewer.SetZSlice(22)
viewer.SetColorWindow(3000)
viewer.SetColorLevel(1500)
#make interface
viewer.Render()
# --- end of script --
#!/usr/bin/env python
import vtk
from vtk.test import Testing
from vtk.util.misc import vtkGetDataRoot
VTK_DATA_ROOT = vtkGetDataRoot()
# Diffuses to 26 neighbors if difference is below threshold.
# Image pipeline
reader = vtk.vtkImageReader()
reader.SetDataByteOrderToLittleEndian()
reader.SetDataExtent(0,63,0,63,1,93)
reader.SetFilePrefix("" + str(VTK_DATA_ROOT) + "/Data/headsq/quarter")
reader.SetDataMask(0x7fff)
reader.SetDataSpacing(1,1,2)
diffusion = vtk.vtkImageAnisotropicDiffusion3D()
diffusion.SetInputConnection(reader.GetOutputPort())
diffusion.SetDiffusionFactor(1.0)
diffusion.SetDiffusionThreshold(100.0)
diffusion.SetNumberOfIterations(5)
diffusion.GetExecutive().SetReleaseDataFlag(0,0)
viewer = vtk.vtkImageViewer()
#viewer DebugOn
viewer.SetInputConnection(diffusion.GetOutputPort())
viewer.SetZSlice(22)
viewer.SetColorWindow(3000)
viewer.SetColorLevel(1500)
#make interface
viewer.Render()
# --- end of script --