def create_labels(graph, label_nodes, labels=[], priorities=[]):
    label_points = vtk.vtkPoints()
    label_str = vtk.vtkStringArray()
    label_str.SetName('Labels')
    for ii, n in enumerate(label_nodes):
        label_points.InsertNextPoint(
            (graph.node[n]['x'], graph.node[n]['y'], graph.node[n]['z']))
        if len(labels) == len(label_nodes):
            label = str(labels[ii])
        else:
            label = str(n)
        label_str.InsertNextValue(label)
    label_polydata = vtk.vtkPolyData()
    label_polydata.SetPoints(label_points)
    label_polydata.GetPointData().AddArray(label_str)
    hierarchy = vtk.vtkPointSetToLabelHierarchy()
    hierarchy.SetLabelArrayName(label_str.GetName())
    if (len(priorities) > 0) and (len(priorities) == len(label_nodes)):
        parray = vtk.vtkIntArray()
        parray.SetName('Priorities')
        for priority in priorities:
            parray.InsertNextValue(priority)
            hierarchy.SetPriorityArrayName(parray.GetName())
    label_mapper = vtk.vtkLabelPlacementMapper()
    label_mapper.SetInputConnection(hierarchy.GetOutputPort())
    if vtk.VTK_MAJOR_VERSION <= 5:
        hierarchy.SetInput(label_polydata)
    else:
        hierarchy.SetInputData(label_polydata)
    label_actor = vtk.vtkActor2D()
    label_actor.SetMapper(label_mapper)
    return label_actor
    def __init__(self, renderer, output_path, start_frame_index,
                 block_sets: List[TFrameBlockData]):
        self.start_frame_index = start_frame_index
        self.output_path = output_path
        self.renderer = renderer

        self.frame_count = len(block_sets)
        self.block_sets = block_sets

        colors = vtk.vtkNamedColors()

        self.block_locations = vtk.vtkPoints()
        self.block_labels = vtk.vtkStringArray()
        self.block_labels.SetName("label")
        self.verts = vtk.vtkCellArray()

        self.block_polydata = vtk.vtkPolyData()
        self.block_polydata.SetPoints(self.block_locations)
        self.block_polydata.SetVerts(self.verts)
        self.block_polydata.GetPointData().AddArray(self.block_labels)

        self.block_label_hierarchy = vtk.vtkPointSetToLabelHierarchy()
        self.block_label_hierarchy.SetInputData(self.block_polydata)
        self.block_label_hierarchy.SetLabelArrayName("label")

        self.block_label_placement_mapper = vtk.vtkLabelPlacementMapper()
        self.block_label_placement_mapper.SetInputConnection(
            self.block_label_hierarchy.GetOutputPort())
        self.block_label_placement_mapper.SetRenderStrategy(
            vtk.vtkFreeTypeLabelRenderStrategy())
        self.block_label_placement_mapper.SetShapeToRoundedRect()
        self.block_label_placement_mapper.SetBackgroundColor(1.0, 1.0, 0.7)
        self.block_label_placement_mapper.SetBackgroundOpacity(0.4)
        self.block_label_placement_mapper.SetMargin(3)

        self.block_mapper = vtk.vtkGlyph3DMapper()
        self.block_mapper.SetInputData(self.block_polydata)

        block = vtk.vtkCubeSource()
        block.SetXLength(VoxelVolumeParameters.BLOCK_SIZE)
        block.SetYLength(VoxelVolumeParameters.BLOCK_SIZE)
        block.SetZLength(VoxelVolumeParameters.BLOCK_SIZE)
        self.block_mapper.SetSourceConnection(block.GetOutputPort())

        # block actor
        self.block_actor = vtk.vtkActor()
        self.block_actor.SetMapper(self.block_mapper)
        self.block_actor.GetProperty().SetColor(
            colors.GetColor3d("PowderBlue"))
        self.block_actor.GetProperty().SetLineWidth(0.1)
        self.block_actor.GetProperty().SetRepresentationToWireframe()

        # label actor
        self.block_label_actor = vtk.vtkActor2D()
        self.block_label_actor.SetMapper(self.block_label_placement_mapper)

        self.renderer.AddActor(self.block_actor)
        self.renderer.AddActor(self.block_label_actor)
Example #3
0
    def set_text_labels(self, positions_3d, text_labels, colour=None):
        """Set text labels for each 3D position

        :param positions_3d: list of 3D positions N x [x, y, z]
        :param text_labels: list of text strings for each 3D position
        :param colour: (optional) text colour tuple (r, g, b)
        """

        # Create vtk data
        vtk_poly_data = vtk.vtkPolyData()
        vtk_points = vtk.vtkPoints()
        vtk_cell_array = vtk.vtkCellArray()

        label_array = vtk.vtkStringArray()
        label_array.SetName('label')

        for point_idx in range(len(positions_3d)):
            point = tuple(positions_3d[point_idx])

            vtk_points.InsertNextPoint(*point)
            vtk_cell_array.InsertNextCell(1)
            vtk_cell_array.InsertCellPoint(point_idx)
            label_array.InsertNextValue(text_labels[point_idx])

        vtk_poly_data.SetPoints(vtk_points)
        vtk_poly_data.SetVerts(vtk_cell_array)

        vtk_poly_data.GetPointData().AddArray(label_array)

        hierarchy = vtk.vtkPointSetToLabelHierarchy()
        hierarchy.SetInputData(vtk_poly_data)
        hierarchy.SetLabelArrayName('label')

        if colour is not None:
            hierarchy.GetTextProperty().SetColor(colour)
        else:
            # Default colour (almost white)
            hierarchy.GetTextProperty().SetColor((0.9, 0.9, 0.9))

            hierarchy.GetTextProperty().SetFontSize(12)

        placement_mapper = vtk.vtkLabelPlacementMapper()
        placement_mapper.SetInputConnection(hierarchy.GetOutputPort())
        placement_mapper.GeneratePerturbedLabelSpokesOn()

        # Add rounded rectangular background
        placement_mapper.SetShapeToRoundedRect()
        placement_mapper.SetBackgroundColor(0.2, 0.2, 0.2)
        placement_mapper.SetBackgroundOpacity(0.5)
        placement_mapper.SetMargin(5)

        self.vtk_actor.SetMapper(placement_mapper)
Example #4
0
 def Pick_point(self, loc):
     """
     This receives coordinates in the GUI where user has picked, converts it
     to mesh coordinates using vtkCellPicker, and places a sphere at picked
     location as a visual aid. Also places a label at the point in the 
     render window.
     TO-DO: Add functionality so user can type the label in, rather than
     have it read 'Mid Patella' every time
     """
     
     x, y = loc
     renderer = self.rens[0]
     picker = vtk.vtkCellPicker()
     picker.SetTolerance(0.01)
     picker.Pick(x, y, 0, renderer)
     points = picker.GetPickedPositions()
     numPoints = points.GetNumberOfPoints()
     #if no points selected, exits function
     if numPoints<1: return
     # Calls function to create a sphere at selected point
     pnt = points.GetPoint(0)
     self.mark(pnt[0], pnt[1], pnt[2])
     # Creating label at selected point
     label = vtk.vtkStringArray()
     label.SetName('label')
     label.InsertNextValue("   Mid Patella")
     lPoints = vtk.vtkPolyData()
     lPoints.SetPoints(points)
     lPoints.GetPointData().AddArray(label)
     
     hier = vtk.vtkPointSetToLabelHierarchy()
     hier.SetInputData(lPoints)
     hier.SetLabelArrayName('label')
     hier.GetTextProperty().SetColor(0,0,0)
     hier.GetTextProperty().SetFontSize(30)
     
     lMapper = vtk.vtkLabelPlacementMapper()
     lMapper.SetInputConnection(hier.GetOutputPort())
     lMapper.SetBackgroundColor(0.3,0.3,0.3)
     lMapper.SetBackgroundOpacity(0.8)
     lMapper.SetMargin(10)
     
     lActor = vtk.vtkActor2D()
     lActor.SetMapper(lMapper)
     self.labels.append(lActor) # keep track of all label actors
     
     self.rens[0].AddActor(lActor)
     self.Render()
     return pnt
Example #5
0
writer.SetWeights(weights)
writer.SetComments("Volume 1: sphere points\nVolume 2: transformed points")
writer.Write()
reader = vtk.vtkMNITagPointReader()
reader.CanReadFile("" + str(fname) + "")
reader.SetFileName("" + str(fname) + "")
textProp = vtk.vtkTextProperty()
textProp.SetFontSize(12)
textProp.SetColor(1.0, 1.0, 0.5)
labelHier = vtk.vtkPointSetToLabelHierarchy()
labelHier.SetInputConnection(reader.GetOutputPort())
labelHier.SetTextProperty(textProp)
labelHier.SetLabelArrayName("LabelText")
labelHier.SetMaximumDepth(15)
labelHier.SetTargetLabelCount(12)
labelMapper = vtk.vtkLabelPlacementMapper()
labelMapper.SetInputConnection(labelHier.GetOutputPort())
labelMapper.UseDepthBufferOff()
labelMapper.SetShapeToRect()
labelMapper.SetStyleToOutline()
labelActor = vtk.vtkActor2D()
labelActor.SetMapper(labelMapper)
glyphSource = vtk.vtkSphereSource()
glyphSource.SetRadius(0.01)
glyph = vtk.vtkGlyph3D()
glyph.SetSourceConnection(glyphSource.GetOutputPort())
glyph.SetInputConnection(reader.GetOutputPort())
mapper = vtk.vtkDataSetMapper()
mapper.SetInputConnection(glyph.GetOutputPort())
actor = vtk.vtkActor()
actor.SetMapper(mapper)
Example #6
0
    def place_label(self,
                    pos,
                    text,
                    text_color=[1, 1, 1],
                    text_font_size=12,
                    label_box_color=[0, 0, 0],
                    label_box=1,
                    label_box_opacity=0.8):
        """Place a label in the scene.

        Parameters
        ----------
        pos : tuple or np.ndarray
            Position in 3D space where to place the label.
        text : str
            Label text.
        text_color : list or np.ndarray, optional
            Color of the label text in RGB.
        text_font_size : int, optional
            Text size of the label.
        label_box_color : list or np.ndarray, optional
            Background color of the label box in RGB.
        label_box: int, optional
            0=do not show the label box, 1=show the label box.
        label_box_opacity: float, optional
            Opacity value of the background box (1=no transparency).

        """
        pd = vtk.vtkPolyData()
        pts = vtk.vtkPoints()
        #verts  = vtk.vtkDoubleArray()
        orient = vtk.vtkDoubleArray()
        orient.SetName('orientation')
        label = vtk.vtkStringArray()
        label.SetName('label')
        pts.InsertNextPoint(pos[0], pos[1], pos[2])
        orient.InsertNextValue(1)
        label.InsertNextValue(str(text))

        pd.SetPoints(pts)
        pd.GetPointData().AddArray(label)
        pd.GetPointData().AddArray(orient)

        h = vtk.vtkPointSetToLabelHierarchy()
        self._set_input_data(h, pd)
        h.SetOrientationArrayName('orientation')
        h.SetLabelArrayName('label')
        h.GetTextProperty().SetColor(text_color[0], text_color[1],
                                     text_color[2])
        h.GetTextProperty().SetFontSize(text_font_size)

        lmapper = vtk.vtkLabelPlacementMapper()
        self._set_input_connection(lmapper, h)
        if label_box:
            lmapper.SetShapeToRoundedRect()
        lmapper.SetBackgroundColor(label_box_color[0], label_box_color[1],
                                   label_box_color[2])
        lmapper.SetBackgroundOpacity(label_box_opacity)
        lmapper.SetMargin(3)

        lactor = vtk.vtkActor2D()
        lactor.SetMapper(lmapper)
        mapper = vtk.vtkPolyDataMapper()
        self._set_input_data(mapper, pd)
        actor = vtk.vtkActor()
        actor.SetMapper(mapper)

        self.actors.append(lactor)
Example #7
0
    def addBSpline(self,
                   path,
                   degree,
                   color,
                   thick=False,
                   thickness=_DEFAULT_BSPLINE_THICKNESS):
        self._addedBSpline = True

        tau, u, spline, splineD1, splineD2, splineD3, curv, tors, arcLength, polLength = path.splinePoints(
        )

        self._textActor.SetInput("Length: " + str(arcLength))

        numIntervals = len(tau) - 1

        curvPlotActor = vtk.vtkXYPlotActor()
        curvPlotActor.SetTitle("Curvature")
        curvPlotActor.SetXTitle("")
        curvPlotActor.SetYTitle("")
        curvPlotActor.SetXValuesToIndex()

        torsPlotActor = vtk.vtkXYPlotActor()
        torsPlotActor.SetTitle("Torsion")
        torsPlotActor.SetXTitle("")
        torsPlotActor.SetYTitle("")
        torsPlotActor.SetXValuesToIndex()

        uArrays = []
        curvArrays = []
        torsArrays = []
        for i in range(numIntervals):
            uArrays.append(vtk.vtkDoubleArray())
            uArrays[i].SetName("t")

            curvArrays.append(vtk.vtkDoubleArray())
            curvArrays[i].SetName("Curvature")

            torsArrays.append(vtk.vtkDoubleArray())
            torsArrays[i].SetName("Torsion")

        curvTorsArray = vtk.vtkDoubleArray()

        #minCurv = minTors = minNd1Xd2 = float("inf")
        #maxCurv = maxTors = float("-inf")

        for i in range(len(u)):
            for j in range(numIntervals):
                if u[i] >= tau[j] and u[i] < tau[j + 1]:
                    break

            uArrays[j].InsertNextValue(u[i])
            curvArrays[j].InsertNextValue(curv[i])
            torsArrays[j].InsertNextValue(tors[i])

            curvTorsArray.InsertNextValue(curv[i])  # + abs(tors[i]))

        #print("minCurv: {:e}; maxCurv: {:e}; minTors: {:e}; maxTors: {:e}; minNd1Xd2: {:e}".format(minCurv, maxCurv, minTors, maxTors, minNd1Xd2))

        for inter in range(numIntervals):
            plotTable = vtk.vtkTable()
            plotTable.AddColumn(uArrays[inter])
            plotTable.AddColumn(curvArrays[inter])
            plotTable.AddColumn(torsArrays[inter])

            points = self._chartXYCurv.AddPlot(vtk.vtkChart.LINE)
            points.SetInputData(plotTable, 0, 1)
            points.SetColor(self.COLOR_PLOT_CURV[0], self.COLOR_PLOT_CURV[1],
                            self.COLOR_PLOT_CURV[2])
            points.SetWidth(1.0)
            if inter > 0:
                points.SetLegendVisibility(False)

            points = self._chartXYTors.AddPlot(vtk.vtkChart.LINE)
            points.SetInputData(plotTable, 0, 2)
            points.SetColor(self.COLOR_PLOT_TORS[0], self.COLOR_PLOT_TORS[1],
                            self.COLOR_PLOT_TORS[2])
            points.SetWidth(1.0)
            if inter > 0:
                points.SetLegendVisibility(False)

        vtkPoints = vtk.vtkPoints()
        for point in spline:
            vtkPoints.InsertNextPoint(point[0], point[1], point[2])

        polyDataLabelP = vtk.vtkPolyData()
        polyDataLabelP.SetPoints(vtkPoints)

        labels = vtk.vtkStringArray()
        labels.SetNumberOfValues(len(spline))
        labels.SetName("labels")
        for i in range(len(spline)):
            if i == 0:
                labels.SetValue(i, "S")
            elif i == len(spline) - 1:
                labels.SetValue(i, "E")
            else:
                labels.SetValue(i, "")

        polyDataLabelP.GetPointData().AddArray(labels)

        sizes = vtk.vtkIntArray()
        sizes.SetNumberOfValues(len(spline))
        sizes.SetName("sizes")
        for i in range(len(spline)):
            if i == 0 or i == len(spline) - 1:
                sizes.SetValue(i, 10)
            else:
                sizes.SetValue(i, 1)

        polyDataLabelP.GetPointData().AddArray(sizes)

        pointMapper = vtk.vtkPolyDataMapper()
        pointMapper.SetInputData(polyDataLabelP)

        pointActor = vtk.vtkActor()
        pointActor.SetMapper(pointMapper)

        pointSetToLabelHierarchyFilter = vtk.vtkPointSetToLabelHierarchy()
        pointSetToLabelHierarchyFilter.SetInputData(polyDataLabelP)
        pointSetToLabelHierarchyFilter.SetLabelArrayName("labels")
        pointSetToLabelHierarchyFilter.SetPriorityArrayName("sizes")
        pointSetToLabelHierarchyFilter.GetTextProperty().SetColor(
            self.COLOR_LABELS)
        pointSetToLabelHierarchyFilter.GetTextProperty().SetFontSize(15)
        pointSetToLabelHierarchyFilter.GetTextProperty().SetBold(True)
        pointSetToLabelHierarchyFilter.Update()

        labelMapper = vtk.vtkLabelPlacementMapper()
        labelMapper.SetInputConnection(
            pointSetToLabelHierarchyFilter.GetOutputPort())
        labelActor = vtk.vtkActor2D()
        labelActor.SetMapper(labelMapper)

        self._rendererScene.AddActor(labelActor)

        if thick:
            cellArray = vtk.vtkCellArray()
            cellArray.InsertNextCell(len(spline))
            for i in range(len(spline)):
                cellArray.InsertCellPoint(i)

            polyData = vtk.vtkPolyData()
            polyData.SetPoints(vtkPoints)
            polyData.SetLines(cellArray)

            polyData.GetPointData().SetScalars(curvTorsArray)

            tubeFilter = vtk.vtkTubeFilter()
            tubeFilter.SetNumberOfSides(8)
            tubeFilter.SetInputData(polyData)
            tubeFilter.SetRadius(thickness)
            tubeFilter.Update()

            mapper = vtk.vtkPolyDataMapper()
            mapper.SetInputConnection(tubeFilter.GetOutputPort())

        else:
            unstructuredGrid = vtk.vtkUnstructuredGrid()
            unstructuredGrid.SetPoints(vtkPoints)
            for i in range(1, len(spline)):
                unstructuredGrid.InsertNextCell(vtk.VTK_LINE, 2, [i - 1, i])

            unstructuredGrid.GetPointData().SetScalars(curvArray)

            mapper = vtk.vtkDataSetMapper()
            mapper.SetInputData(unstructuredGrid)

        actor = vtk.vtkActor()
        actor.SetMapper(mapper)
        actor.GetProperty().SetColor(color)

        self._rendererScene.AddActor(actor)
Example #8
0
    reader = vtk.vtkMNITagPointReader()
    reader.CanReadFile(fname)
    reader.SetFileName(fname)

    textProp = vtk.vtkTextProperty()
    textProp.SetFontSize(12)
    textProp.SetColor(1.0, 1.0, 0.5)

    labelHier = vtk.vtkPointSetToLabelHierarchy()
    labelHier.SetInputConnection(reader.GetOutputPort())
    labelHier.SetTextProperty(textProp)
    labelHier.SetLabelArrayName("LabelText")
    labelHier.SetMaximumDepth(15)
    labelHier.SetTargetLabelCount(12)

    labelMapper = vtk.vtkLabelPlacementMapper()
    labelMapper.SetInputConnection(labelHier.GetOutputPort())
    labelMapper.UseDepthBufferOff()
    labelMapper.SetShapeToRect()
    labelMapper.SetStyleToOutline()

    labelActor = vtk.vtkActor2D()
    labelActor.SetMapper(labelMapper)

    glyphSource = vtk.vtkSphereSource()
    glyphSource.SetRadius(0.01)

    glyph = vtk.vtkGlyph3D()
    glyph.SetSourceConnection(glyphSource.GetOutputPort())
    glyph.SetInputConnection(reader.GetOutputPort())
Example #9
0
    def vtk_movie_popularity_by_releases_circular_chart(self):
        # Compute unit vectors for all 18 genre delimeter lines
        unit_vectors = []
        i = 0
        while i < 360:
            unit_vectors.append(
                [np.cos(i * np.pi / 180),
                 np.sin(i * np.pi / 180)])
            i += 360 / 19
        # Remove the last unit vector added due to floating point rounding errors
        unit_vectors = unit_vectors[:-1]

        # Draw the delimeter lines
        lines = vtk.vtkCellArray()
        colors = vtk.vtkNamedColors()
        points = vtk.vtkPoints()
        # First point is origin
        points.InsertNextPoint(0, 0, 0)
        for index, unit_vector in enumerate(unit_vectors):
            z = 0  # Scale z axis up by 10
            points.InsertNextPoint(unit_vector[0], unit_vector[1], 0)
            line = vtk.vtkLine()
            line.GetPointIds().SetId(0, 0)
            line.GetPointIds().SetId(1, index + 1)
            lines.InsertNextCell(line)

        # Add labels to the delimeter lines - each corresponds to a genre
        # Data structures for labels
        label_pd = vtk.vtkPolyData()
        label_points = vtk.vtkPoints()
        label_verts = vtk.vtkCellArray()
        label = vtk.vtkStringArray()
        label.SetName('label')
        for index, unit_vector in enumerate(unit_vectors):
            label_points.InsertNextPoint(unit_vector[0] * 1.1,
                                         unit_vector[1] * 1.1, 0)
            label_verts.InsertNextCell(1)
            label_verts.InsertCellPoint(index)
            label.InsertNextValue(self.genres[index])

        label_pd.SetPoints(label_points)
        label_pd.SetVerts(label_verts)
        label_pd.GetPointData().AddArray(label)

        hier = vtk.vtkPointSetToLabelHierarchy()
        hier.SetInputData(label_pd)
        hier.SetLabelArrayName('label')
        hier.GetTextProperty().SetColor(0.0, 0.0, 0.0)

        label_mapper = vtk.vtkLabelPlacementMapper()
        label_mapper.SetInputConnection(hier.GetOutputPort())
        label_mapper.SetPlaceAllLabels(True)
        # label_mapper.SetShapeToRoundedRect()
        # label_mapper.SetBackgroundColor(1.0, 1.0, 0.7)
        # label_mapper.SetBackgroundOpacity(0.8)
        # label_mapper.SetMargin(3)

        label_actor = vtk.vtkActor2D()
        label_actor.SetMapper(label_mapper)

        # Generate a point on each unit vector that corresponds to that unit vector's genre's popularity for a given time
        year = self.year_vis3 - 1930  # year 1930 = index 0
        if year < 0:
            # Total was set, so get the overall data for all years
            year_popularity = {
                genre: sum([
                    self.genre_popularity_by_releases[y][genre]
                    for y in range(len(self.genre_popularity_by_releases))
                ])
                for genre in self.genre_popularity_by_releases[0]
            }  # Get the dict for this year
            year_popularity = list(sorted(year_popularity.items(
            )))  # Convert the dict into a list of [key, value]
            year_pop_sum = sum([
                n[1] for n in year_popularity
            ])  # Compute the total number of ratings submitted for this year
            normalised_year_popularity = list(
                map(
                    lambda n: [
                        n[0],
                        (3 * n[1] / year_pop_sum if year_pop_sum > 0 else n[1])
                    ], year_popularity)
            )  # Normalised popularities (sum over genres = 1)
            print(max([n[1] for n in normalised_year_popularity]))
            # The maximum normalised_year_pop is <0.33 even when looking at all data combined, so multiply all pop values by 3 (to make the plot more readable)
        else:
            year_popularity = self.genre_popularity_by_releases[
                year]  # Get the dict for this year
            year_popularity = list(sorted(year_popularity.items(
            )))  # Convert the dict into a list of [key, value]
            year_pop_sum = sum([
                n[1] for n in year_popularity
            ])  # Compute the total number of ratings submitted for this year
            normalised_year_popularity = list(
                map(
                    lambda n: [
                        n[0],
                        (3 * n[1] / year_pop_sum if year_pop_sum > 0 else n[1])
                    ], year_popularity)
            )  # Normalised popularities (sum over genres = 1)
            # The maximum normalised_year_pop ever is <0.33, so multiply all pop values by 3 (to make the plot more readable)

        # Create points on each unit vector proportionately distant from origin to this genre's popularity for that year
        pop_lines = vtk.vtkCellArray()
        pop_points = vtk.vtkPoints()
        for index, unit_vector in enumerate(unit_vectors):
            pop_points.InsertNextPoint(
                unit_vector[0] * normalised_year_popularity[index][1],
                unit_vector[1] * normalised_year_popularity[index][1], 0)
            if index > 0:
                line = vtk.vtkLine()
                line.GetPointIds().SetId(0, index - 1)
                line.GetPointIds().SetId(1, index)
                pop_lines.InsertNextCell(line)
        # Add the last line that joins the last pop_point to the first pop_point
        line = vtk.vtkLine()
        line.GetPointIds().SetId(0, index)
        line.GetPointIds().SetId(1, 0)
        pop_lines.InsertNextCell(line)

        # Create a Polydata to store all the lines in
        linesPolyData = vtk.vtkPolyData()
        popLinesPolyData = vtk.vtkPolyData()

        # Add the lines to the dataset
        linesPolyData.SetPoints(points)
        linesPolyData.SetLines(lines)
        popLinesPolyData.SetPoints(pop_points)
        popLinesPolyData.SetLines(pop_lines)

        # Create a mapper and actor for the lines
        line_mapper = vtk.vtkPolyDataMapper()
        line_mapper.SetInputData(linesPolyData)
        pop_line_mapper = vtk.vtkPolyDataMapper()
        pop_line_mapper.SetInputData(popLinesPolyData)

        line_actor = vtk.vtkActor()
        line_actor.SetMapper(line_mapper)
        line_actor.GetProperty().SetLineWidth(1)
        line_actor.GetProperty().SetColor(colors.GetColor3d("Black"))

        pop_line_actor = vtk.vtkActor()
        pop_line_actor.SetMapper(pop_line_mapper)
        pop_line_actor.GetProperty().SetLineWidth(3)
        pop_line_actor.GetProperty().SetColor(colors.GetColor3d("Red"))

        # Write the current year on the bottom-left of the frame
        txt = vtk.vtkTextActor()
        txt.SetInput(str(year + 1930) if year >= 0 else '1930-2018')
        txtprop = txt.GetTextProperty()
        txtprop.SetFontFamilyToArial()
        txtprop.SetFontSize(60)
        txtprop.SetColor(1, 1, 1)
        txt.SetDisplayPosition(40, 40)

        # Create a renderer, render window, and interactor
        renderer = vtk.vtkRenderer()
        renderWindow = vtk.vtkRenderWindow()
        renderWindow.AddRenderer(renderer)
        renderWindowInteractor = vtk.vtkRenderWindowInteractor()
        renderWindowInteractor.SetRenderWindow(renderWindow)

        # Add the actors to the scene
        renderer.AddActor(label_actor)
        renderer.AddActor(txt)
        renderer.AddActor(line_actor)
        renderer.AddActor(pop_line_actor)
        renderer.SetBackground(
            colors.GetColor3d("SlateGray"))  # Background color green

        # Render and interact
        renderWindow.Render()
        renderWindowInteractor.Initialize(
        )  # Initialize first, then create timer events

        # Only set up animation if year != -1 (i.e. don't animate 'Total' display) and if framerate > 0
        if year >= 0 and self.framerate_vis3 != 0:
            cb = vtkTimerCallback_vis3(year)
            # Set all necessary data as fields in instance
            cb.line_actor = pop_line_actor
            cb.text_actor = txt
            cb.genre_popularity = self.genre_popularity_by_releases
            cb.unit_vectors = unit_vectors
            renderWindowInteractor.AddObserver('TimerEvent', cb.execute)
            if self.framerate_vis3 == -1:
                # Set framerate to display the entire loop in 1s
                framerate = 1000 // 90
            else:
                framerate = 1000 // self.framerate_vis3
            timerId = renderWindowInteractor.CreateRepeatingTimer(framerate)

        # Start the interaction and timer
        renderWindowInteractor.Start()
Example #10
0
    def vtk_ratings_by_genre(self):
        # Read which metric to use
        metric = self.metric

        genre_list = list(self.rating_stats_by_genre.keys())
        genre_list.sort()

        # Set up labels for the X and Y axes
        width = len(genre_list)
        height = 9

        # Data structures for labels
        label_pd = vtk.vtkPolyData()
        label_points = vtk.vtkPoints()
        label_verts = vtk.vtkCellArray()
        label = vtk.vtkStringArray()
        label.SetName('label')

        # Y axis labels
        for y in range(height):
            label_points.InsertNextPoint(-1, y, 0)
            label_verts.InsertNextCell(1)
            label_verts.InsertCellPoint(y)
            label.InsertNextValue(
                str((y + 1) * 0.5) + '-' + str(
                    (y + 2) * 0.5))  # Construct labels as '0.5-1.0'
        # Add Y axis title
        label_points.InsertNextPoint(-2, (height - 1) / 2, 0)
        label_verts.InsertNextCell(1)
        label_verts.InsertCellPoint(height)
        label.InsertNextValue("Scores")

        # X axis labels
        for x in range(width):
            label_points.InsertNextPoint(x, -1, 0)
            label_verts.InsertNextCell(1)
            label_verts.InsertCellPoint(x)
            label.InsertNextValue(genre_list[x])
        # Add X axis title
        label_points.InsertNextPoint((width - 1) / 2, -2, 0)
        label_verts.InsertNextCell(1)
        label_verts.InsertCellPoint(width)
        label.InsertNextValue("Genre")

        # Add chart title
        label_points.InsertNextPoint((width - 1) / 4, height + 2, 2)
        label_verts.InsertNextCell(1)
        label_verts.InsertCellPoint(width + height)
        label.InsertNextValue(
            "Distribution of {} (in ranges of 0.5) of Movies by Genre".format(
                self.vis1_rating_list.get()))

        label_pd.SetPoints(label_points)
        label_pd.SetVerts(label_verts)
        label_pd.GetPointData().AddArray(label)

        hier = vtk.vtkPointSetToLabelHierarchy()
        hier.SetInputData(label_pd)
        hier.SetLabelArrayName('label')
        hier.GetTextProperty().SetColor(0.0, 0.0, 0.0)

        label_mapper = vtk.vtkLabelPlacementMapper()
        label_mapper.SetInputConnection(hier.GetOutputPort())
        label_mapper.SetPlaceAllLabels(True)
        # label_mapper.SetShapeToRoundedRect()
        # label_mapper.SetBackgroundColor(1.0, 1.0, 0.7)
        # label_mapper.SetBackgroundOpacity(0.8)
        # label_mapper.SetMargin(3)

        label_actor = vtk.vtkActor2D()
        label_actor.SetMapper(label_mapper)

        # Done preparing labels, now prepare the points and lines

        lines = vtk.vtkCellArray()

        colors = vtk.vtkNamedColors()
        # Create the points in the grid and lines joining them vertically
        points = vtk.vtkPoints()
        for x in range(width):
            for y in range(height):
                z = self.rating_stats_by_genre[
                    genre_list[x]][metric][y] * 10  # Scale z axis up by 10
                points.InsertNextPoint(x, y, z)
                if (y < height - 1):
                    line = vtk.vtkLine()
                    line.GetPointIds().SetId(0, height * x + y)
                    line.GetPointIds().SetId(1, height * x + y + 1)
                    lines.InsertNextCell(line)

        # Add the grid points to a polydata object
        polydata = vtk.vtkPolyData()
        polydata.SetPoints(points)

        glyphFilter = vtk.vtkVertexGlyphFilter()
        glyphFilter.SetInputData(polydata)
        glyphFilter.Update()

        # Create a Polydata to store all the lines in
        linesPolyData = vtk.vtkPolyData()

        # Add the points and lines to the dataset
        linesPolyData.SetPoints(points)
        linesPolyData.SetLines(lines)

        # Create a mapper and actor for the lines
        line_mapper = vtk.vtkPolyDataMapper()
        line_mapper.SetInputData(linesPolyData)

        line_actor = vtk.vtkActor()
        line_actor.SetMapper(line_mapper)
        line_actor.GetProperty().SetLineWidth(1)
        line_actor.GetProperty().SetColor(colors.GetColor3d("Black"))

        # Create a mapper and actor for the points
        points_mapper = vtk.vtkPolyDataMapper()
        points_mapper.SetInputConnection(glyphFilter.GetOutputPort())

        points_actor = vtk.vtkActor()
        points_actor.SetMapper(points_mapper)
        points_actor.GetProperty().SetPointSize(3)
        points_actor.GetProperty().SetColor(colors.GetColor3d("Black"))

        ##### Point triangulation #####
        # Triangulate the grid points
        delaunay = vtk.vtkDelaunay2D()
        delaunay.SetInputData(polydata)
        delaunay.Update()

        outputPolyData = delaunay.GetOutput()

        ##### Colour mapping #####
        # From VTK coloured elevation map example
        bounds = 6 * [0.0]
        outputPolyData.GetBounds(bounds)
        # Find min and max z
        minZ = bounds[4]
        maxZ = bounds[5]

        # Create the colour table
        # From https://stackoverflow.com/questions/51747494/how-to-visualize-2d-array-of-doubles-in-vtk
        colorSeries = vtk.vtkColorSeries()
        colorSeries.SetColorScheme(vtk.vtkColorSeries.CITRUS)
        colour_table = vtk.vtkColorTransferFunction()
        colour_table.SetColorSpaceToHSV()
        nColors = colorSeries.GetNumberOfColors()
        zMin = minZ
        zMax = maxZ
        for i in range(0, nColors):
            color = colorSeries.GetColor(i)
            color = [c / 255.0 for c in color]
            t = zMin + float(zMax - zMin) / (nColors - 1) * i
            colour_table.AddRGBPoint(t, color[0], color[1], color[2])

        # Generate colours for each point based on the colour table
        colours = vtk.vtkUnsignedCharArray()
        colours.SetNumberOfComponents(3)
        colours.SetName("Colours")

        for i in range(0, outputPolyData.GetNumberOfPoints()):
            p = 3 * [0.0]
            outputPolyData.GetPoint(i, p)

            dcolour = 3 * [0.0]
            colour_table.GetColor(p[2], dcolour)

            colour = 3 * [0.0]
            for j in range(0, 3):
                colour[j] = int(255 * dcolour[j])

            try:
                colours.InsertNextTupleValue(colour)
            except AttributeError:
                # For compatibility with new VTK generic data arrays.
                colours.InsertNextTypedTuple(colour)

        outputPolyData.GetPointData().SetScalars(colours)

        # Create a mapper and actor
        triangulated_mapper = vtk.vtkPolyDataMapper()
        triangulated_mapper.SetInputData(outputPolyData)

        triangulated_actor = vtk.vtkActor()
        triangulated_actor.SetMapper(triangulated_mapper)

        # Create a renderer, render window, and interactor
        renderer = vtk.vtkRenderer()
        renderWindow = vtk.vtkRenderWindow()
        renderWindow.AddRenderer(renderer)
        renderWindowInteractor = vtk.vtkRenderWindowInteractor()
        renderWindowInteractor.SetRenderWindow(renderWindow)

        # Add the actors to the scene
        renderer.AddActor(label_actor)
        renderer.AddActor(line_actor)
        renderer.AddActor(points_actor)
        renderer.AddActor(triangulated_actor)
        renderer.SetBackground(
            colors.GetColor3d("SlateGray"))  # Background color green

        # Render and interact
        renderWindow.Render()
        renderWindowInteractor.Start()
Example #11
0
    def addBSpline(self, path, degree, color, thick=False, thickness=_DEFAULT_BSPLINE_THICKNESS):
        self._addedBSpline = True

        tau, u, spline, splineD1, splineD2, splineD3, curv, tors, arcLength, polLength = path.splinePoints()

        self._textActor.SetInput("Length: "+str(arcLength))

        numIntervals = len(tau)-1

        curvPlotActor = vtk.vtkXYPlotActor()
        curvPlotActor.SetTitle("Curvature")
        curvPlotActor.SetXTitle("")
        curvPlotActor.SetYTitle("")
        curvPlotActor.SetXValuesToIndex()
        
        torsPlotActor = vtk.vtkXYPlotActor()
        torsPlotActor.SetTitle("Torsion")
        torsPlotActor.SetXTitle("")
        torsPlotActor.SetYTitle("")
        torsPlotActor.SetXValuesToIndex()

        uArrays = []
        curvArrays = []
        torsArrays = []
        for i in range(numIntervals):
            uArrays.append(vtk.vtkDoubleArray())
            uArrays[i].SetName("t")
            
            curvArrays.append(vtk.vtkDoubleArray())
            curvArrays[i].SetName("Curvature")

            torsArrays.append(vtk.vtkDoubleArray())
            torsArrays[i].SetName("Torsion")
        
        curvTorsArray = vtk.vtkDoubleArray()

        #minCurv = minTors = minNd1Xd2 = float("inf")
        #maxCurv = maxTors = float("-inf")
        
        for i in range(len(u)):
            for j in range(numIntervals):
                if u[i] >= tau[j] and u[i] < tau[j+1]:
                    break
            
            uArrays[j].InsertNextValue(u[i])
            curvArrays[j].InsertNextValue(curv[i])
            torsArrays[j].InsertNextValue(tors[i])
            
            curvTorsArray.InsertNextValue(curv[i])# + abs(tors[i]))

        #print("minCurv: {:e}; maxCurv: {:e}; minTors: {:e}; maxTors: {:e}; minNd1Xd2: {:e}".format(minCurv, maxCurv, minTors, maxTors, minNd1Xd2))

        for inter in range(numIntervals):
            plotTable = vtk.vtkTable()
            plotTable.AddColumn(uArrays[inter])
            plotTable.AddColumn(curvArrays[inter])
            plotTable.AddColumn(torsArrays[inter])
        
            points = self._chartXYCurv.AddPlot(vtk.vtkChart.LINE)
            points.SetInputData(plotTable, 0, 1)
            points.SetColor(self.COLOR_PLOT_CURV[0], self.COLOR_PLOT_CURV[1], self.COLOR_PLOT_CURV[2])
            points.SetWidth(1.0)
            if inter > 0:
                points.SetLegendVisibility(False)
            
            points = self._chartXYTors.AddPlot(vtk.vtkChart.LINE)
            points.SetInputData(plotTable, 0, 2)
            points.SetColor(self.COLOR_PLOT_TORS[0], self.COLOR_PLOT_TORS[1], self.COLOR_PLOT_TORS[2])
            points.SetWidth(1.0)
            if inter > 0:
                points.SetLegendVisibility(False)

            
        vtkPoints = vtk.vtkPoints()
        for point in spline:
            vtkPoints.InsertNextPoint(point[0], point[1], point[2])

        polyDataLabelP = vtk.vtkPolyData()
        polyDataLabelP.SetPoints(vtkPoints)
        
        labels = vtk.vtkStringArray()
        labels.SetNumberOfValues(len(spline))
        labels.SetName("labels")
        for i in range(len(spline)):
            if i == 0:
                labels.SetValue(i, "S")
            elif i == len(spline)-1:
                labels.SetValue(i, "E")
            else:
                labels.SetValue(i, "")

        polyDataLabelP.GetPointData().AddArray(labels)

        sizes = vtk.vtkIntArray()
        sizes.SetNumberOfValues(len(spline))
        sizes.SetName("sizes")
        for i in range(len(spline)):
            if i == 0 or i == len(spline)-1:
                sizes.SetValue(i, 10)
            else:
                sizes.SetValue(i,1)

        polyDataLabelP.GetPointData().AddArray(sizes)
        
        pointMapper = vtk.vtkPolyDataMapper()
        pointMapper.SetInputData(polyDataLabelP)
 
        pointActor = vtk.vtkActor()
        pointActor.SetMapper(pointMapper)

        pointSetToLabelHierarchyFilter = vtk.vtkPointSetToLabelHierarchy()
        pointSetToLabelHierarchyFilter.SetInputData(polyDataLabelP)
        pointSetToLabelHierarchyFilter.SetLabelArrayName("labels")
        pointSetToLabelHierarchyFilter.SetPriorityArrayName("sizes")
        pointSetToLabelHierarchyFilter.GetTextProperty().SetColor(self.COLOR_LABELS)
        pointSetToLabelHierarchyFilter.GetTextProperty().SetFontSize(15)
        pointSetToLabelHierarchyFilter.GetTextProperty().SetBold(True)
        pointSetToLabelHierarchyFilter.Update()
        
        labelMapper = vtk.vtkLabelPlacementMapper()
        labelMapper.SetInputConnection(pointSetToLabelHierarchyFilter.GetOutputPort())
        labelActor = vtk.vtkActor2D()
        labelActor.SetMapper(labelMapper)

        self._rendererScene.AddActor(labelActor)

        if thick:
            cellArray = vtk.vtkCellArray()
            cellArray.InsertNextCell(len(spline))
            for i in range(len(spline)):
                cellArray.InsertCellPoint(i)

            polyData = vtk.vtkPolyData()
            polyData.SetPoints(vtkPoints)
            polyData.SetLines(cellArray)

            polyData.GetPointData().SetScalars(curvTorsArray)
            
            tubeFilter = vtk.vtkTubeFilter()
            tubeFilter.SetNumberOfSides(8)
            tubeFilter.SetInputData(polyData)
            tubeFilter.SetRadius(thickness)
            tubeFilter.Update()

            mapper = vtk.vtkPolyDataMapper()
            mapper.SetInputConnection(tubeFilter.GetOutputPort())

        else:
            unstructuredGrid = vtk.vtkUnstructuredGrid()
            unstructuredGrid.SetPoints(vtkPoints)
            for i in range(1, len(spline)):
                unstructuredGrid.InsertNextCell(vtk.VTK_LINE, 2, [i-1, i])

            unstructuredGrid.GetPointData().SetScalars(curvArray)
            
            mapper = vtk.vtkDataSetMapper()
            mapper.SetInputData(unstructuredGrid)

        actor = vtk.vtkActor()
        actor.SetMapper(mapper)
        actor.GetProperty().SetColor(color)

        self._rendererScene.AddActor(actor)
    def __init__(self, bones, do_triangulation, do_import):
        VTKWindow.__init__(self, title='Triangulation Helper')

        self.bones = bones
        self.do_triangulation = do_triangulation
        self.current = bones[0]
        self.last_step = None
        self.current_modified = False
        self.do_import = do_import

        self.ll = QtGui.QVBoxLayout()
        self.list_model = lm = BonesListModel(self.bones, self)
        self.list_view = QtGui.QListView()
        self.list_view.setModel(lm)
        self.list_view.selectionModel().select(lm.index(0), QtGui.QItemSelectionModel.SelectCurrent)
        self.list_view.setSizePolicy(QtGui.QSizePolicy.Fixed, QtGui.QSizePolicy.MinimumExpanding)
        self.ll.addWidget(self.list_view)

        self.add_bone_button = self.get_new_button('Add new bone', 'list-add')
        self.ll.addWidget(self.add_bone_button)

        self.hl.insertLayout(0, self.ll)

        self.bl = QtGui.QHBoxLayout()
        self.toggle_triangulation_button = self.get_new_button('Toggle Triangulation', 'image-x-generic', checkable=True)
        self.bl.insertWidget(-1, self.toggle_triangulation_button)
        self.toggle_triangulation_button.setChecked(True)
        self.toggle_markers_button = self.get_new_button('Toggle Markers', 'text-x-generic', checkable=True)
        self.bl.insertWidget(-1, self.toggle_markers_button)
        self.toggle_area_effect_button = self.get_new_button('Toggle Area Effect', 'list-add', checkable=True)
        self.bl.insertWidget(-1, self.toggle_area_effect_button)
        self.undo_button = self.get_new_button('Undo Last Step', 'edit-undo')
        self.bl.insertWidget(-1, self.undo_button)
        self.show_outline_button = self.get_new_button('Show Outline', 'zoom-in', checkable=True)
        self.bl.insertWidget(-1, self.show_outline_button)
        self.mark_as_done_button = self.get_new_button('Mark as done', 'emblem-readonly', checkable=True)
        self.bl.insertWidget(-1, self.mark_as_done_button)
        self.mark_as_done_button.setChecked('done' in self.current and self.current['done'])
        self.save_button = self.get_new_button('Save triangulation', 'document-save')
        self.bl.insertWidget(-1, self.save_button)
        self.vl.insertLayout(-1, self.bl)

        self.image_import = vtk.vtkImageImport()
        self.image_actor = vtk.vtkImageActor()
        self.triangle_data = vtk.vtkPolyData()
        self.triangle_mapper = vtk.vtkPolyDataMapper()
        self.triangle_actor = vtk.vtkActor()
        self.marker_data = vtk.vtkPolyData()
        self.marker_mapper = vtk.vtkPolyDataMapper()
        self.marker_actor = vtk.vtkActor()
        self.marker_actor.VisibilityOff()
        self.marker_labels_filter = vtk.vtkPointSetToLabelHierarchy()
        self.marker_labels_mapper = vtk.vtkLabelPlacementMapper()
        self.marker_labels_actor = vtk.vtkActor2D()
        self.marker_labels_actor.VisibilityOff()
        self.initialize_actors()
        self.render_actors([
            self.image_actor,
            self.triangle_actor,
            self.marker_actor,
            self.marker_labels_actor
        ])
        self.update_current_data(including_image=True)
        self.vtkWidget.GetRenderWindow().Render()
        self.ren.ResetCamera()

        self.iren.RemoveObservers('CharEvent')
        self.iren.AddObserver('KeyPressEvent', self.on_key, 0.0)
        self.intstyle.AddObserver('SelectionChangedEvent', self.area_selected, 0.0)
        self.list_view.selectionModel().currentChanged.connect(self.on_bone_model_change)
        self.add_bone_button.clicked.connect(self.add_bone)
        self.toggle_triangulation_button.clicked.connect(self.toggle_triangulation)
        self.toggle_markers_button.clicked.connect(self.toggle_markers)
        self.mark_as_done_button.clicked.connect(self.mark_as_done)
        self.save_button.clicked.connect(self.save_current)
        self.undo_button.clicked.connect(self.undo)
        self.show_outline_button.clicked.connect(self.trigger_outline)