def test_words(self):
s = Seq("AGTCAGCTACGACGcgcx", dna_alphabet)
w = list(s.words(2, unambiguous_dna_alphabet))
self.assertEqual(len(w), len(s) - 2)
self.assertEqual(
w,
[
"AG",
"GT",
"TC",
"CA",
"AG",
"GC",
"CT",
"TA",
"AC",
"CG",
"GA",
"AC",
"CG",
"GC",
"CG",
"GC",
],
)
self.assertEqual(list(s.words(len(s), unambiguous_dna_alphabet)), [])
self.assertEqual(
list(s.words(len(s) - 1, unambiguous_dna_alphabet)),
[
"AGTCAGCTACGACGCGC",
],
)
w = list(s.words(200, unambiguous_dna_alphabet))
def test_words(self):
s = Seq("AGTCAGCTACGACGcgcx", dna_alphabet)
w = list(s.words(2, unambiguous_dna_alphabet))
self.assertEqual(len(w), len(s) - 2)
self.assertEqual(w, [
'AG', 'GT', 'TC', 'CA', 'AG', 'GC', 'CT', 'TA', 'AC', 'CG', 'GA',
'AC', 'CG', 'GC', 'CG', 'GC'
])
self.assertEqual(list(s.words(len(s), unambiguous_dna_alphabet)), [])
self.assertEqual(list(s.words(len(s) - 1, unambiguous_dna_alphabet)), [
"AGTCAGCTACGACGCGC",
])
w = list(s.words(200, unambiguous_dna_alphabet))
