class UpdateScenarioViewTest(TestCase):
def setUp(self):
self.scenario = ScenarioFactory(xml=get_xml("default.xml"))
self.client.login(username=self.scenario.user.username, password="******")
self.url = reverse("ts_om.scenario.update")
# self.data = {"xml": get_xml("default.xml")}
self.data = {
"scenario_id": self.scenario.id,
"xml": "",
"name": "Updated scenario name",
"description": "New Description"
}
def test(self):
response = self.client.post(self.url, data=self.data)
self.assertEqual(response.status_code, 200)
self.scenario.refresh_from_db()
self.assertEqual(self.scenario.name, "Updated scenario name")
self.assertEqual(self.scenario.description, "New Description")
self.assertEqual(self.scenario.xml, "")
def test_no_permission(self):
user = UserFactory()
client = Client()
client.login(username=user.username, password="******")
response = client.post(self.url, data=self.data)
self.assertEqual(response.status_code, 403)
self.scenario.refresh_from_db()
self.assertNotEqual(self.scenario.name, "Updated scenario name")
self.assertNotEqual(self.scenario.description, "New Description")
self.assertNotEqual(self.scenario.xml, "")
def setUp(self):
self.scenario = ScenarioFactory()
self.user = self.scenario.user
self.user.set_password("1")
self.user.save()
self.url = reverse("ts_om.download",
kwargs={"scenario_id": self.scenario.id})
def test_xml_name_property_set(self):
scenario = ScenarioFactory(xml="""
<om:scenario xmlns:om="http://openmalaria.org/schema/scenario_32"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" name="Test"
schemaVersion="32" xsi:schemaLocation="http://openmalaria.org/schema/scenario_32 scenario_32.xsd">
</om:scenario>""")
self.assertEqual(scenario.xml_name, "Test")
scenario.xml_name = "New Name"
self.assertEqual(scenario.xml_name, "New Name")
self.assertIn("name=\"New Name\"", scenario.xml)
def setUp(self):
self.scenario = ScenarioFactory()
self.url = reverse("ts_om.summary",
kwargs={"scenario_id": self.scenario.id})
self.client.login(username=self.scenario.user.username, password="******")
self.data = {
"name": "Scenario",
"desc": "Scenario Description",
"xml": "mmm"
}
class DownloadScenarioXmlViewTest(TestCase):
def setUp(self):
self.scenario = ScenarioFactory()
self.user = self.scenario.user
self.user.set_password("1")
self.user.save()
self.url = reverse("ts_om.download",
kwargs={"scenario_id": self.scenario.id})
def test_anonymous(self):
client = Client()
response = client.get(self.url)
self.assertEqual(response.status_code, 302)
self.assertIn("login", response.url)
def test_success(self):
client = Client()
client.login(username=self.user.username, password="******")
response = client.get(self.url)
self.assertEqual(response.status_code, 200)
self.assertIn(
'<demography maximumAgeYrs="90" name="Rachuonyo" popSize="100">',
response.content)
def test_wrong_user(self):
client = Client()
user = UserFactory()
client.login(username=user.username, password="******")
response = client.get(self.url)
self.assertEqual(response.status_code, 404)
def test_no_scenario(self):
client = Client()
client.login(username=self.user.username, password="******")
url = reverse("ts_om.download", kwargs={"scenario_id": 1000000})
response = client.get(url)
self.assertEqual(response.status_code, 404)
def test_incorrect_xml(self):
client = Client()
self.scenario.xml = "123"
self.scenario.save()
client.login(username=self.user.username, password="******")
response = client.get(self.url)
self.assertEqual(response.status_code, 200)
self.assertEqual(response.content, "123")
def test_pretty_print(self):
client = Client()
self.scenario.xml = "<xml><test></test></xml>"
self.scenario.save()
client.login(username=self.user.username, password="******")
response = client.get(self.url)
self.assertEqual(response.status_code, 200)
self.assertEqual(response.content, "<xml>\n <test/>\n</xml>\n")
def setUp(self):
self.scenario = ScenarioFactory(xml=get_xml("default.xml"))
self.client.login(username=self.scenario.user.username, password="******")
self.url = reverse("ts_om.scenario.update")
# self.data = {"xml": get_xml("default.xml")}
self.data = {
"scenario_id": self.scenario.id,
"xml": "",
"name": "Updated scenario name",
"description": "New Description"
}
def setUp(self):
self.simulation = Simulation.objects.create(status=Simulation.COMPLETE)
self.simulation.set_input_file(get_xml("scenario.xml"))
self.simulation.set_output_file(get_xml("output.txt"))
self.simulation.set_ctsout_file(get_xml("ctsout.txt"))
self.simulation.set_model_stdout(get_xml("model_stdout_stderr.txt"))
self.scenario = ScenarioFactory(xml=get_xml("scenario.xml"),
new_simulation=self.simulation)
self.user = self.scenario.user
self.client.login(username=self.user, password="******")
self.url = reverse("ts_om_viz.get_cts_data",
kwargs={
"sim_id": self.scenario.new_simulation.id,
"measure_name": "simulated EIR"
})
def test_xml_name_property_get_4(self):
scenario = ScenarioFactory(xml="""
<om:scenario xmlns:om="http://openmalaria.org/schema/scenario_32"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" name="Default scenario"
schemaVersion="32" xsi:schemaLocation="http://openmalaria.org/schema/scenario_32 scenario_32.xsd">
</om:scenario>""")
self.assertEqual(scenario.xml_name, "Default scenario")
def setUp(self):
self.scenario = ScenarioFactory()
self.client.login(username=self.scenario.user.username, password="******")
self.url = reverse("ts_om.monitoring.update.form",
kwargs={"scenario_id": self.scenario.id})
self.data = {
"xml": get_xml("group 8 baseline p2.xml"),
"start_date": 1,
}
class DeleteScenarioViewTest(TestCase):
def setUp(self):
self.user = UserFactory()
self.scenario = ScenarioFactory(user=self.user)
self.client.login(username=self.user.username, password="******")
self.url = reverse("ts_om.delete",
kwargs={"scenario_id": self.scenario.id})
def test_as_anonymous(self):
client = Client()
response = client.get(self.url)
self.assertEqual(response.status_code, 302)
self.scenario.refresh_from_db()
self.assertEqual(self.scenario.deleted, False)
def test_no_permission(self):
user = UserFactory()
client = Client()
client.login(username=user.username, password="******")
response = client.get(self.url)
self.assertEqual(response.status_code, 403)
self.scenario.refresh_from_db()
self.assertEqual(self.scenario.deleted, False)
def test_success(self):
response = self.client.get(self.url)
self.assertEqual(response.status_code, 302)
self.assertEqual(self.client.session["notifications"][0]["type"],
SUCCESS)
self.assertEqual(response.url, reverse("ts_om.list"))
self.scenario.refresh_from_db()
self.assertEqual(self.scenario.deleted, True)
def test_success_undelete(self):
self.scenario.deleted = True
self.scenario.save()
response = self.client.get(self.url)
self.assertEqual(response.status_code, 302)
self.assertEqual(self.client.session["notifications"][0]["type"],
SUCCESS)
self.assertEqual(response.url, reverse("ts_om.list"))
self.scenario.refresh_from_db()
self.assertEqual(self.scenario.deleted, False)
def create_scenario_from_directory(user, directory):
simulation = Simulation.objects.create(status=Simulation.COMPLETE)
simulation.set_input_file(get_xml(os.path.join(directory, "scenario.xml")))
simulation.set_output_file(get_xml(os.path.join(directory, "output.txt")))
simulation.set_ctsout_file(get_xml(os.path.join(directory, "ctsout.txt")))
simulation.set_model_stdout(
get_xml(os.path.join(directory, "model_stdout_stderr.txt")))
scenario = ScenarioFactory(user=user,
xml=get_xml("scenario.xml"),
new_simulation=simulation)
return scenario
def test_empty_simulation(self):
simulation = Simulation.objects.create()
scenario = ScenarioFactory(user=self.user,
xml="",
new_simulation=simulation)
url = reverse("ts_om_viz.SimulationView", kwargs={"id": simulation.id})
response = self.client.get(url)
self.assertEqual(response.status_code, 200)
self.assertIn("Error processing input or output files",
response.content)
self.assertEqual(response.context["simulation"], simulation)
self.assertEqual(response.context["output_txt_filename"], None)
self.assertEqual(response.context["ctsout_txt_filename"], None)
self.assertNotIn("xml_filename", response.context)
self.assertNotIn("model_stdout", response.context)
class SubmitScenariosViewTest(TestCase):
def setUp(self):
self.scenario = ScenarioFactory()
self.user = self.scenario.user
self.user.set_password("1")
self.user.save()
@patch("website.apps.ts_om.views.submit_scenarios_view.submit")
def test_anonymous(self, submit_func):
client = Client()
data = {"scenario_ids": json.dumps([self.scenario.id])}
response = client.post(reverse("ts_om.submit"), data=data)
self.assertEqual(response.status_code, 200)
response_json = json.loads(response.content)
self.assertEqual(response_json["ok"], False)
self.scenario.refresh_from_db()
self.assertEqual(submit_func.called, False)
@patch("website.apps.ts_om.views.submit_scenarios_view.submit")
@patch("website.apps.ts_om.views.submit_scenarios_view.rest_validate")
def test_success(self, rest_validate_func, submit_func):
rest_validate_func.return_value = json.dumps({'result': 0})
client = Client()
client.login(username=self.user.username, password="******")
data = {"scenario_ids": json.dumps([self.scenario.id])}
response = client.post(reverse("ts_om.submit"), data=data)
self.assertEqual(response.status_code, 200)
response_json = json.loads(response.content)
self.assertEqual(response_json["ok"], True)
self.scenario.refresh_from_db()
self.assertEqual(rest_validate_func.called, True)
self.assertEqual(submit_func.called, True)
@patch("website.apps.ts_om.views.submit_scenarios_view.submit")
@patch("website.apps.ts_om.views.submit_scenarios_view.rest_validate")
def test_validation_fails(self, rest_validate_func, submit_func):
rest_validate_func.return_value = json.dumps({'result': 66})
client = Client()
client.login(username=self.user.username, password="******")
data = {"scenario_ids": json.dumps([self.scenario.id])}
response = client.post(reverse("ts_om.submit"), data=data)
self.assertEqual(response.status_code, 200)
response_json = json.loads(response.content)
# self.assertEqual(response_json["ok"], False)
self.scenario.refresh_from_db()
self.assertEqual(rest_validate_func.called, True)
self.assertEqual(submit_func.called, False)
def setUp(self):
self.scenario = ScenarioFactory(xml=get_xml("default.xml"))
self.client.login(username=self.scenario.user.username, password="******")
self.url = reverse("ts_om.status")
# self.data = {"xml": get_xml("default.xml")}
self.data = {"scenario_id": self.scenario.id}
class ScenarioSummaryViewTest(TestCase):
def setUp(self):
self.scenario = ScenarioFactory()
self.url = reverse("ts_om.summary",
kwargs={"scenario_id": self.scenario.id})
self.client.login(username=self.scenario.user.username, password="******")
self.data = {
"name": "Scenario",
"desc": "Scenario Description",
"xml": "mmm"
}
def test_get_as_anonymous(self):
client = Client()
response = client.get(self.url)
self.assertEqual(response.status_code, 302)
self.assertIn(reverse("login") + "?next=" + self.url, response.url)
def test_get_as_different_user(self):
client = Client()
user = UserFactory()
client.login(username=user.username, password="******")
response = client.get(self.url)
self.assertEqual(response.status_code, 403)
def test_success_get(self):
response = self.client.get(self.url)
self.assertEqual(response.status_code, 200)
self.assertEqual(response.context["scenario"], self.scenario)
self.assertEqual(
['arabiensis', 'funestus', 'minor', 'gambiae'],
[vector.mosquito for vector in response.context["vectors"]])
def test_get_broken_xml(self):
self.scenario.xml = "<"
self.scenario.save()
response = self.client.get(self.url)
self.assertEqual(response.status_code, 200)
def test_post_as_anonymous(self):
client = Client()
response = client.post(self.url, data={})
self.assertEqual(response.status_code, 302)
self.assertIn(reverse("login") + "?next=" + self.url, response.url)
def test_post_as_different_user(self):
client = Client()
user = UserFactory()
client.login(username=user.username, password="******")
response = client.post(self.url, data={})
self.assertEqual(response.status_code, 403)
def test_post_broken_xml(self):
response = self.client.post(self.url, data=self.data)
self.assertEqual(response.status_code, 302)
self.assertEqual(response.url, self.url)
self.assertEqual(self.client.session["notifications"][0]["type"],
DANGER)
def test_post_success(self):
self.data['xml'] = get_xml()
response = self.client.post(self.url, data=self.data)
self.assertEqual(response.status_code, 302)
self.assertEqual(response.url, reverse('ts_om.list'))
self.assertEqual(self.client.session["notifications"][0]["type"],
SUCCESS)
@patch("website.apps.ts_om_edit.views.ScenarioSummaryView.submit.submit")
def test_post_save_and_run_failed(self, submit_func):
submit_func.return_value = None
self.data['xml'] = get_xml()
self.data['submit_run'] = "Save and Run"
response = self.client.post(self.url, data=self.data)
self.assertEqual(response.status_code, 302)
self.assertEqual(response.url, reverse('ts_om.list'))
self.assertEqual(len(self.client.session["notifications"]), 2)
# print(self.client.session["notifications"][0]["message"])
# print(self.client.session["notifications"][1]["message"])
self.assertEqual(self.client.session["notifications"][0]["type"],
DANGER) # Can't submit the simulation
self.assertEqual(self.client.session["notifications"][1]["type"],
SUCCESS) # Scenario saved successfully
self.assertEqual(submit_func.called, True)
@patch("website.apps.ts_om_edit.views.ScenarioSummaryView.submit.submit")
def test_post_save_and_run_success(self, submit_func):
simulation = SimulationFactory()
submit_func.return_value = simulation
self.data['xml'] = get_xml()
self.data['submit_run'] = "Save and Run"
response = self.client.post(self.url, data=self.data)
self.assertEqual(response.status_code, 302)
self.assertEqual(response.url, reverse('ts_om.list'))
self.assertEqual(len(self.client.session["notifications"]), 2)
# print(self.client.session["notifications"][0]["message"])
# print(self.client.session["notifications"][1]["message"])
self.assertEqual(self.client.session["notifications"][0]["type"],
SUCCESS) # Submitted successfully
self.assertEqual(self.client.session["notifications"][1]["type"],
SUCCESS) # Scenario saved successfully
self.assertEqual(submit_func.called, True)
class GetCtsDataViewTest(TestCase):
def setUp(self):
self.simulation = Simulation.objects.create(status=Simulation.COMPLETE)
self.simulation.set_input_file(get_xml("scenario.xml"))
self.simulation.set_output_file(get_xml("output.txt"))
self.simulation.set_ctsout_file(get_xml("ctsout.txt"))
self.simulation.set_model_stdout(get_xml("model_stdout_stderr.txt"))
self.scenario = ScenarioFactory(xml=get_xml("scenario.xml"),
new_simulation=self.simulation)
self.user = self.scenario.user
self.client.login(username=self.user, password="******")
self.url = reverse("ts_om_viz.get_survey_data",
kwargs={
"sim_id": self.scenario.new_simulation.id,
"measure_id": nSevere,
"bin_number": 1
})
def test_simulation_no_input_file(self):
simulation = Simulation.objects.create(status=Simulation.COMPLETE)
self.scenario.new_simulation = simulation
self.scenario.save()
url = reverse("ts_om_viz.get_survey_data",
kwargs={
"sim_id": simulation.id,
"measure_id": nSevere,
"bin_number": 1
})
self.assertRaises(TypeError, self.client.get, url)
def test_unknown_measure(self):
url = reverse("ts_om_viz.get_survey_data",
kwargs={
"sim_id": self.scenario.new_simulation.id,
"measure_id": 100000,
"bin_number": 1
})
response = self.client.get(url)
self.assertEqual(response.status_code, 404)
def test_success(self):
response = self.client.get(self.url)
self.assertEqual(response.status_code, 200)
json_content = json.loads(response.content)
self.assertEqual(json_content["sim_id"],
self.scenario.new_simulation.id)
self.assertEqual(json_content["data"][0], [10.082191780821917, 1.0])
self.assertEqual(json_content["data"][-1], [30.0, 0.0])
self.assertEqual(json_content["measure_name"], "nSevere(0.0 - 90)")
self.assertIn("description", json_content)
def test_success_specifies_name(self):
scenario = create_scenario_from_directory(user=self.user,
directory="gambiae")
url = reverse("ts_om_viz.get_survey_data",
kwargs={
"sim_id": scenario.new_simulation.id,
"measure_id": Vector_Nv0,
"bin_number": "gambiae"
})
response = self.client.get(url)
self.assertEqual(response.status_code, 200)
json_content = json.loads(response.content)
self.assertEqual(json_content["sim_id"], scenario.new_simulation.id)
self.assertEqual(json_content["data"][0], [2.0, 14.6554])
self.assertEqual(json_content["data"][-1], [10.0, 14.6554])
self.assertEqual(json_content["measure_name"], "Vector_Nv0(gambiae)")
self.assertIn("description", json_content)
def test_success_no_ctsout_file(self):
self.simulation.ctsout_file = None
self.simulation.model_stdout = None
self.simulation.save()
response = self.client.get(self.url)
self.assertEqual(response.status_code, 200)
json_content = json.loads(response.content)
self.assertEqual(json_content["sim_id"],
self.scenario.new_simulation.id)
self.assertEqual(json_content["data"][0], [10.082191780821917, 1.0])
self.assertEqual(json_content["data"][-1], [30.0, 0.0])
self.assertEqual(json_content["measure_name"], "nSevere(0.0 - 90)")
self.assertIn("description", json_content)
def test_anonymous_user(self):
client = Client()
response = client.get(self.url)
self.assertEqual(response.status_code, 403)
def test_different_user(self):
client = Client()
user = UserFactory()
client.login(username=user.username, password="******")
response = client.get(self.url)
self.assertEqual(response.status_code, 403)
def setUp(self):
self.scenario = ScenarioFactory()
def test_output_file_property_3(self):
scenario = ScenarioFactory(xml=get_xml("tororo.xml"))
scenario.new_simulation = Simulation.objects.create()
scenario.save()
scenario.new_simulation.set_model_stdout("123")
self.assertEqual(scenario.output_file.read(), "123")
def test_output_file_property_2(self):
scenario = ScenarioFactory(xml=get_xml("tororo.xml"))
scenario.new_simulation = Simulation.objects.create()
scenario.save()
self.assertEqual(scenario.output_file, None)
def test_output_file_property_1(self):
scenario = ScenarioFactory(xml=get_xml("tororo.xml"))
self.assertEqual(scenario.output_file, None)
def setUp(self):
self.scenario = ScenarioFactory()
self.user = self.scenario.user
self.user.set_password("1")
self.user.save()
def test_xml_name_property_get_2(self):
scenario = ScenarioFactory(xml="<aaaa")
self.assertEqual(scenario.xml_name, "Invalid xml document")
def test_xml_name_property_get_3(self):
scenario = ScenarioFactory(xml="<xml></xml>")
self.assertEqual(scenario.xml_name, "Unnamed scenario")
def setUp(self):
self.user = UserFactory()
self.scenario = ScenarioFactory(user=self.user)
self.client.login(username=self.user.username, password="******")
self.url = reverse("ts_om.delete",
kwargs={"scenario_id": self.scenario.id})
def test_demography_property_1(self):
scenario = ScenarioFactory(xml=get_xml("tororo.xml"))
self.assertEqual(scenario.demography.name, "Tororo")
def test_demography_property_2(self):
scenario = ScenarioFactory(xml="xml")
self.assertEqual(scenario.demography, "no_name")
class GetCtsDataViewTest(TestCase):
def setUp(self):
self.simulation = Simulation.objects.create(status=Simulation.COMPLETE)
self.simulation.set_input_file(get_xml("scenario.xml"))
self.simulation.set_output_file(get_xml("output.txt"))
self.simulation.set_ctsout_file(get_xml("ctsout.txt"))
self.simulation.set_model_stdout(get_xml("model_stdout_stderr.txt"))
self.scenario = ScenarioFactory(xml=get_xml("scenario.xml"),
new_simulation=self.simulation)
self.user = self.scenario.user
self.client.login(username=self.user, password="******")
self.url = reverse("ts_om_viz.get_cts_data",
kwargs={
"sim_id": self.scenario.new_simulation.id,
"measure_name": "simulated EIR"
})
def test_simulation_no_input_file(self):
simulation = Simulation.objects.create(status=Simulation.COMPLETE)
self.scenario.new_simulation = simulation
self.scenario.save()
url = reverse("ts_om_viz.get_cts_data",
kwargs={
"sim_id": self.scenario.new_simulation.id,
"measure_name": "simulated EIR"
})
self.assertRaises(TypeError, self.client.get, url)
def test_unknown_measure(self):
url = reverse("ts_om_viz.get_cts_data",
kwargs={
"sim_id": self.scenario.new_simulation.id,
"measure_name": "simulated EIR1"
})
response = self.client.get(url)
self.assertEqual(response.status_code, 404)
def test_success(self):
response = self.client.get(self.url)
self.assertEqual(response.status_code, 200)
json_content = json.loads(response.content)
self.assertEqual(json_content["sim_id"],
self.scenario.new_simulation.id)
self.assertEqual(json_content["data"][0], 0.00223318)
self.assertEqual(json_content["data"][-1], 0.00290952)
self.assertEqual(json_content["measure_name"], "simulated EIR")
self.assertIn("description", json_content)
def test_success_no_output_file(self):
self.simulation.output_file = None
self.simulation.model_stdout = None
self.simulation.save()
response = self.client.get(self.url)
self.assertEqual(response.status_code, 200)
json_content = json.loads(response.content)
self.assertEqual(json_content["sim_id"],
self.scenario.new_simulation.id)
self.assertEqual(json_content["data"][0], 0.00223318)
self.assertEqual(json_content["data"][-1], 0.00290952)
self.assertEqual(json_content["measure_name"], "simulated EIR")
self.assertIn("description", json_content)
def test_anonymous_user(self):
client = Client()
response = client.get(self.url)
self.assertEqual(response.status_code, 403)
def test_different_user(self):
client = Client()
user = UserFactory()
print user.username
print self.user.username
client.login(username=user.username, password="******")
response = client.get(self.url)
self.assertEqual(response.status_code, 403)