def _serve_tiles(self, request):
tile_config = request.path[len("/data/plugin/WSI/tiles/"):].split("/")
id = int(tile_config[0])
if id == self._cache_slide_id:
slide = self._cache_slide
else:
slide_path = self._cache_slide_prop[id]["slide_path"]
slide = DeepZoomGenerator(open_slide(slide_path))
self._cache_slide = slide
self._cache_slide_id = id
if len(tile_config) <= 2:
response = werkzeug.Response(slide.get_dzi("jpeg"))
response.headers.set('Content-Type', 'application/xml')
return response
else:
level, colrow = tile_config[1:]
level = int(level)
col, row = map(int, colrow[:-1 * len(".jpeg"):].split("_"))
tile = slide.get_tile(level, (col, row))
buf = PILBytesIO()
tile.save(buf, "jpeg", quality=75)
response = werkzeug.Response(buf.getvalue())
response.headers.set('Content-Type', 'image/jpeg')
return response
def _new_window(self, request):
"""Create a new WebRTC window on request."""
if not self.data_reader.is_active(): # no data
response = json.dumps({"window_id": -1, "logdir": self._logdir})
return werkzeug.Response(response,
content_type="application/json",
headers=self._HEADERS)
if self._gui is None:
self._start_gui()
win_width = min(3840,
max(640, int(float(request.args.get('width', 1024)))))
win_height = min(2400,
max(480, int(float(request.args.get('height', 768)))))
this_window = Open3DPluginWindow(self.data_reader,
"Open3D for Tensorboard", win_width,
win_height)
with self.window_lock:
self._windows[this_window.window.uid] = this_window
response = json.dumps({
"window_id": this_window.window.uid,
"logdir": self._logdir
})
this_window.init_done.wait() # Wait for WebRTC initialization
return werkzeug.Response(response,
content_type="application/json",
headers=self._HEADERS)
def _json_response(data, status=200):
if data is None:
return werkzeug.Response(status=status)
else:
data = json.dumps(data, indent=2) + "\n"
return werkzeug.Response(data,
status=status,
mimetype="application/json")
def git(self, request, repo, **kw):
self.authorize(request)
if not request.env.uid or request.env.user.login == 'public':
return werkzeug.Response(headers=[('WWW-Authenticate', 'Basic')],
status=401)
try:
repository = request.env['galicea_git.repository'].search([
('system_name', '=', repo)
])
except AccessError:
return werkzeug.Response(status=403)
if not repository.exists():
return werkzeug.Response(status=404)
http_environment = request.httprequest.environ
git_env = {
'REQUEST_METHOD': http_environment['REQUEST_METHOD'],
'QUERY_STRING': http_environment['QUERY_STRING'],
'CONTENT_TYPE': request.httprequest.headers.get('Content-Type'),
'REMOTE_ADDR': http_environment['REMOTE_ADDR'],
'GIT_PROJECT_ROOT': os.path.join(config['data_dir'], 'git'),
'GIT_HTTP_EXPORT_ALL': '1',
'PATH_INFO': http_environment['PATH_INFO'][4:],
'REMOTE_USER': request.env.user.login
}
command_env = os.environ.copy()
for var in git_env:
command_env[var] = git_env[var]
git = subprocess.Popen(['/usr/lib/git-core/git-http-backend'],
stdin=subprocess.PIPE,
stdout=subprocess.PIPE,
stderr=subprocess.PIPE,
env=command_env,
shell=True)
stdout, stderr = git.communicate(http_input_stream(request).read())
headers_str, body = stdout.split(b"\r\n\r\n", 2)
http_status_code = 200
headers = []
for header in headers_str.split(b"\r\n"):
name, value = header.split(b': ', 2)
if name == 'Status':
http_code = int(value.split(b' ')[0])
else:
headers.append((name.decode('ascii'), value.decode('ascii')))
return werkzeug.Response(body,
status=http_status_code,
headers=headers)
def openlayers(req, path='ol_merc.html'):
global html
if not html:
try:
f = open(path, 'rb')
html = f.read()
f.close()
except IOError:
return z.Response('Openlayers HTML/JS file not found: %s' % path,
status=404,
mimetype='text/html')
return z.Response(html, status=200, mimetype='text/html')
def wrapper(self, *args, **kwargs):
data = method(self, *args, **kwargs)
s = simplejson.dumps(data, default=jsonconverter)
if self.request.args.has_key("callback"):
callback = self.request.args.get("callback")
s = "%s(%s)" % (callback, s)
response = werkzeug.Response(s)
response.content_type = "application/javascript"
else:
response = werkzeug.Response(s)
response.content_type = "application/json"
for a, v in that.headers.items():
response.headers[a] = v
return response
def trace_route(self, request):
name = request.args.get("run")
worker = request.args.get("worker")
run = self.get_run(name)
profile = run.get_profile(worker)
fopen = open
with fopen(profile.trace_file_path, 'rb') as f:
raw_data = f.read()
if profile.trace_file_path.endswith('.gz'):
headers = []
headers.append(('Content-Encoding', 'gzip'))
return werkzeug.Response(raw_data, content_type="application/json", headers=headers)
else:
return werkzeug.Response(raw_data, content_type="application/json")
def get_resource(request, filename):
"""Return a static resource from the js folder."""
if not filename:
return z.Response('Not Found no filename', status=404)
else:
filename = os.path.join(os.path.dirname(__file__), 'js', filename)
if os.path.isfile(filename):
mimetype = guess_type(filename)[0] or 'application/octet-stream'
f = file(filename, 'rb')
try:
return z.Response(f.read(), mimetype=mimetype)
finally:
f.close()
return z.Response('Not Found: %s' % filename, status=404)
def _serve_view(self, request):
filename = request.args.get("file")
filepath = os.path.join(os.path.dirname(__file__), "static", filename)
with open(filepath) as infile:
contents = infile.read()
return werkzeug.Response(contents,
content_type="application/javascript")
def _serve_slide_prop(self, request):
run = request.args.get("run")
tag = request.args.get("tag")
runtag = run + tag
if runtag in self._ids:
id = self._ids[runtag]
slide_mpp = self._cache_slide_prop[id]["slide_mpp"]
else:
if run is None or tag is None:
raise werkzeug.exceptions.BadRequest("Must specify run and tag")
try:
slide_path = [
tensor_util.make_ndarray(event.tensor_proto)
.item()
.decode("utf-8")
for event in self._multiplexer.Tensors(run, tag)
][-1]
except KeyError:
raise werkzeug.exceptions.BadRequest("Invalid run or tag")
try:
slide = open_slide(slide_path)
mpp_x = slide.properties[openslide.PROPERTY_NAME_MPP_X]
mpp_y = slide.properties[openslide.PROPERTY_NAME_MPP_Y]
slide_mpp = (float(mpp_x) + float(mpp_y)) / 2
except (KeyError, ValueError):
slide_mpp = 0
id = len(self._cache_slide_prop)
self._ids[runtag] = id
self._cache_slide_prop.append({"slide_path": slide_path, "slide_mpp": slide_mpp})
data = {"id": id, "mpp": slide_mpp}
contents = json.dumps(data, sort_keys=True)
return werkzeug.Response(contents, content_type="application/json")
def __call__(self, environ, start_response):
if self.urlmap is None:
raise NotImplementedError('Please provide urlmap')
urls = self.urlmap.bind_to_environ(environ)
self.logger.debug(self.__class__.__name__ + ': handling request')
res = None
try:
endpoint, kwargs = urls.match()
res = getattr(self, 'subapp_' + endpoint, None)
if res is not None:
utils.pop_path(environ)
return res(environ, start_response)
res = getattr(self, 'app_' + endpoint, None)
if res is not None:
return res(environ, start_response)
attr = getattr(self, 'respond_' + endpoint, None)
if attr is not None:
res = attr(werkzeug.Request(environ), **kwargs)
return res(environ, start_response)
except werkexc.NotFound, exc:
tmpl = self.templates.get_template('404.html')
req = werkzeug.Request(environ)
res = werkzeug.Response(tmpl.render(exc=exc,
url_root=req.url_root,
version=__version__),
content_type='text/html; charset=UTF-8',
status=404)
return res(environ, start_response)
def _serve_js(self, request):
"""Serve frontend JS files on request."""
if request.is_multiprocess:
return werkzeug.exceptions.ExpectationFailed(
"Open3D plugin does not run on a multi-process web server.",
response=self._ERROR_RESPONSE)
js_file = request.path.split('/')[-1]
if js_file == "index.js":
js_file = os.path.join(os.path.dirname(__file__), "frontend",
js_file)
elif js_file == "webrtcstreamer.js":
js_file = os.path.join(self._RESOURCE_PATH, "html", js_file)
elif js_file == "adapter.min.js":
js_file = os.path.join(self._RESOURCE_PATH, "html", "libs",
js_file)
else:
raise werkzeug.exceptions.NotFound(
description=f"JS file {request.path} does not exist.",
response=self._ERROR_RESPONSE)
with open(js_file) as infile:
return werkzeug.Response(infile.read(),
content_type="application/javascript",
headers=self._HEADERS)
def _serve_greetings(self, request):
"""Serves greeting data for the specified tag and run.
For details on how to use tags and runs, see
https://github.com/tensorflow/tensorboard#tags-giving-names-to-data
"""
run = request.args.get("run")
tag = request.args.get("tag")
ctx = plugin_util.context(request.environ)
experiment = plugin_util.experiment_id(request.environ)
if run is None or tag is None:
raise werkzeug.exceptions.BadRequest("Must specify run and tag")
read_result = self.data_provider.read_tensors(
ctx,
downsample=1000,
plugin_name=metadata.PLUGIN_NAME,
experiment_id=experiment,
run_tag_filter=provider.RunTagFilter(runs=[run], tags=[tag]),
)
data = read_result.get(run, {}).get(tag, [])
if not data:
raise werkzeug.exceptions.BadRequest("Invalid run or tag")
event_data = [datum.numpy.item().decode("utf-8") for datum in data]
contents = json.dumps(event_data, sort_keys=True)
return werkzeug.Response(contents, content_type="application/json")
def _serve_css(self, unused_request):
with open(
os.path.join(os.path.dirname(__file__), "frontend",
"style.css")) as cssfile:
return werkzeug.Response(cssfile.read(),
content_type="text/css",
headers=self._HEADERS)
def trace_route(self, request):
profile = self._get_profile_for_request(request)
if not profile.has_kernel: # Pure CPU.
raw_data = self._cache.read(profile.trace_file_path)
if not profile.trace_file_path.endswith('.gz'):
raw_data = gzip.compress(raw_data, 1)
else:
file_with_gpu_metrics = self._gpu_metrics_file_dict.get(
profile.trace_file_path)
if file_with_gpu_metrics:
raw_data = io.read(file_with_gpu_metrics)
else:
raw_data = self._cache.read(profile.trace_file_path)
if profile.trace_file_path.endswith('.gz'):
raw_data = gzip.decompress(raw_data)
raw_data = profile.append_gpu_metrics(raw_data)
# write the data to temp file
fp = tempfile.NamedTemporaryFile('w+b',
suffix='.json.gz',
delete=False)
fp.close()
# Already compressed, no need to gzip.open
with open(fp.name, mode='wb') as file:
file.write(raw_data)
self._gpu_metrics_file_dict[profile.trace_file_path] = fp.name
headers = [('Content-Encoding', 'gzip')]
headers.extend(TorchProfilerPlugin.headers)
return werkzeug.Response(raw_data,
content_type="application/json",
headers=headers)
def upload_complete(digest: str) -> typing.Union[werkzeug.Response,
typing.Tuple[str, int]]:
if not tooltool_api.utils.is_valid_sha512(digest):
raise werkzeug.exceptions.BadRequest('Invalid sha512 digest')
# if the pending upload is still valid, then we can't check this file
# yet, so return 409 Conflict. If there is no PU, or it's expired,
# then we can proceed.
file = tooltool_api.models.File.query.filter(tooltool_api.models.File.sha512 == digest).first()
if file:
for pending_upload in file.pending_uploads:
until = pending_upload.expires.replace(tzinfo=pytz.UTC) - tooltool_api.utils.now()
if until > datetime.timedelta(0):
# add 1 second to avoid rounding / skew errors
headers = {'X-Retry-After': str(1 + int(until.total_seconds()))}
return werkzeug.Response(status=409, headers=headers)
exchange = f'exchange/{flask.current_app.config["PULSE_USER"]}/{tooltool_api.config.PROJECT_NAME}'
logger.info(f'Sending digest `{digest}` to queue `{exchange}` for route `{tooltool_api.config.PULSE_ROUTE_CHECK_FILE_PENDING_UPLOADS}`.')
try:
flask.current_app.pulse.publish(
exchange,
tooltool_api.config.PULSE_ROUTE_CHECK_FILE_PENDING_UPLOADS,
dict(digest=digest),
)
except Exception as e:
import traceback
msg = 'Can\'t send notification to pulse.'
trace = traceback.format_exc()
logger.error(f'{msg}\nException:{e}\nTraceback: {trace}')
return '{}', 202
def wrapper(*args, **kwargs):
try:
# is login?
uid = get_session_uid()
username = ext_user_id(uid)
if not username:
raise Exception(
'login expected',
'invalid_request',
)
if userclass == 'admin':
config.read("conf/api.ini")
ok = config['users']['admin'].find(username) >= 0
if not ok:
raise Exception(
'login incorrect',
'protected zone',
)
response = endpoint(*args, **kwargs)
return response
except Exception as e:
error_message = "error: {0}".format(e)
return werkzeug.Response(
response=json.dumps({
'error': 'access error',
'error_message': error_message
}),
status=400,
headers={} #cors_headers
)
def _webrtc_http_api(self, request):
"""Relay WebRTC connection setup messages coming as HTTP requests."""
try:
entry_point = request.path[(len(self._PLUGIN_DIRECTORY_PATH_PART) -
1):]
query_string = (b'?' + request.query_string
if request.query_string else b'')
data = request.get_data()
if len(self._windows) == 0:
raise werkzeug.exceptions.BadRequest(
description="No windows exist to service this request: "
f"{request}",
response=self._ERROR_RESPONSE)
with self._http_api_lock:
response = webrtc_server.call_http_api(entry_point,
query_string, data)
except RuntimeError:
raise werkzeug.exceptions.BadRequest(
description="Request is not a function call, ignored: "
f"{request}",
response=self._ERROR_RESPONSE)
else:
return werkzeug.Response(response,
content_type="application/json",
headers=self._HEADERS)
def _serve_wit(self, request):
del request # unused
filepath = os.path.join(os.path.dirname(__file__), "static",
"wit_tb_bin.html")
with open(filepath) as infile:
contents = infile.read()
return werkzeug.Response(contents, content_type="text/html")
def _serve_page(cls):
req_page = request.httprequest.path
page_domain = [('url', '=', req_page)
] + request.website.website_domain()
published_domain = page_domain
# specific page first
page = request.env['website.page'].sudo().search(
published_domain, order='website_id asc', limit=1)
if page:
# prefetch all menus (it will prefetch website.page too)
request.website.menu_id
if page and (request.website.is_publisher() or page.is_visible):
need_to_cache = False
cache_key = page._get_cache_key(request)
if (page.cache_time # cache > 0
and request.httprequest.method == "GET" and request.env.
user._is_public() # only cache for unlogged user
and 'nocache'
not in request.params # allow bypass cache / debug
and not request.session.debug and len(cache_key)
and cache_key[-1] is not None # nocache via expr
):
need_to_cache = True
try:
r = page._get_cache_response(cache_key)
if r['time'] + page.cache_time > time.time():
response = werkzeug.Response(r['content'],
mimetype=r['contenttype'])
response._cached_template = r['template']
response._cached_page = page
return response
except KeyError:
pass
_, ext = os.path.splitext(req_page)
response = request.render(page.view_id.id, {
'deletable': True,
'main_object': page,
},
mimetype=_guess_mimetype(ext))
if need_to_cache and response.status_code == 200:
r = response.render()
page._set_cache_response(
cache_key, {
'content':
r,
'contenttype':
response.headers['Content-Type'],
'time':
time.time(),
'template':
getattr(response, 'qcontext',
{}).get('response_template')
})
return response
return False
def _response(self, headers, body, status=200):
try:
fixed_headers = {str(k): v for k, v in headers.items()}
except:
fixed_headers = headers
response = werkzeug.Response(response=body, status=status, headers=fixed_headers)
return response
def _forward_post(self, url_path, proxy_info, model_inst, params):
"""The CMIS Browser binding is designed to be queried from the browser
Therefore, the parameters in a POST are expected to be submitted as
HTTP multipart forms. Therefore each parameter in the request is
forwarded as a part of a multipart/form-data.
:return: :class:`Response <Response>` object
:rtype: werkzeug.Response
"""
files = {}
if 'content' in params:
# we are in a mulitpart form data'
content = params.pop('content')
files['content'] = (content.filename, content.stream,
content.mimetype)
for k, v in params.iteritems():
# no filename for parts dedicated to HTTP Form data
files[k] = (None, v, 'text/plain;charset=utf-8')
url = self._get_redirect_url(proxy_info, url_path)
r = requests.post(url,
files=files,
auth=(proxy_info['username'],
proxy_info['password']))
r.raise_for_status()
if r.text:
return self._prepare_json_response(r.json(),
dict(r.headers.items()),
proxy_info, model_inst)
else:
response = werkzeug.Response()
return response
def _run(self, *args):
try:
stdout = subprocess.check_output(*args, stderr=subprocess.STDOUT)
except subprocess.CalledProcessError as e:
raise werkzeug.exceptions.InternalServerError(e.stdout)
else:
return werkzeug.Response(json.dumps({"output": stdout.decode()}),
200, {"Content-Type": "application/json"})
def func(*args, **kwargs):
values = f(*args, **kwargs)
try:
values.update({u'request': args[0]})
except (TypeError, AttributeError):
return values
body = env.get_template(template_name).render(values)
return wz.Response(body, mimetype=mimetype)
def setUp(self):
super(EmptyPathRedirectMiddlewareTest, self).setUp()
app = werkzeug.Request.application(
lambda req: werkzeug.Response(req.path))
app = empty_path_redirect.EmptyPathRedirectMiddleware(app)
app = self._lax_strip_foo_middleware(app)
self.app = app
self.server = werkzeug_test.Client(self.app, werkzeug.BaseResponse)
def respond_pypi_action(self, req):
#remote_user = req.environ.get('REMOTE_USER', None)
#if not remote_user:
# res = werkzeug.Response('Unauthorized', status=401)
# return res
params = req.values.to_dict()
params.update(req.files)
action = params.pop(':action')
try:
self.pypi.perform_action(action, **params)
res = werkzeug.Response(content_type='text/plain; charset=UTF-8')
res.response = 'OK'
except pypi.SecurityError, err:
res = werkzeug.Response('Forbidden', 403)
res.response = str(err)
def _serve_wit_js(self, request):
del request # unused
filepath = os.path.join(os.path.dirname(__file__), "static",
"wit_tb_bin.js")
with io.open(filepath, encoding='utf-8') as infile:
contents = infile.read()
return werkzeug.Response(contents,
content_type="application/javascript")
def _serve_js(self, request):
del request # unused
filepath = os.path.join(os.path.dirname(__file__), "static", "index.js")
with open(filepath) as infile:
contents = infile.read()
return werkzeug.Response(
contents, content_type="application/javascript"
)
def __redirect(self, url, params, response_mode):
location = '{}{}{}'.format(url,
'?' if response_mode == 'query' else '#',
werkzeug.url_encode(params))
return werkzeug.Response(
headers={'Location': location},
response=None,
status=302,
)
def static_file_route(self, request):
filename = os.path.basename(request.path)
extension = os.path.splitext(filename)[1]
if extension == '.html':
mimetype = 'text/html'
elif extension == '.css':
mimetype = 'text/css'
elif extension == '.js':
mimetype = 'application/javascript'
else:
mimetype = 'application/octet-stream'
filepath = os.path.join(os.path.dirname(__file__), 'static', filename)
try:
with open(filepath, 'rb') as infile:
contents = infile.read()
except IOError:
return werkzeug.Response('404 Not Found', 'text/plain', code=404)
return werkzeug.Response(contents, content_type=mimetype)