def _connect_checkboxes_to_global_prefs_keys(self, isConnect = True):
"""
#doc
"""
if not isConnect:
return
#ORDER of items in tuples checkboxes and prefs_keys is IMPORTANT!
checkboxes = (
self.arrowsOnThreePrimeEnds_checkBox,
self.arrowsOnFivePrimeEnds_checkBox,
self.strandThreePrimeArrowheadsCustomColorCheckBox,
self.strandFivePrimeArrowheadsCustomColorCheckBox,
self.arrowsOnBackBones_checkBox)
prefs_keys = (
self._prefs_key_arrowsOnThreePrimeEnds(),
self._prefs_key_arrowsOnFivePrimeEnds(),
self._prefs_key_useCustomColorForThreePrimeArrowheads(),
self._prefs_key_useCustomColorForFivePrimeArrowheads(),
arrowsOnBackBones_prefs_key)
for checkbox, prefs_key in zip(checkboxes, prefs_keys):
connect_checkbox_with_boolean_pref(checkbox, prefs_key)
return
def _loadJoinOptionsGroupbox(self, pmGroupBox):
"""
Load widgets in this group box.
"""
self.clickToJoinDnaStrandsCheckBox = \
PM_CheckBox(pmGroupBox ,
text = 'Click on strand to join',
widgetColumn = 0,
spanWidth = True)
connect_checkbox_with_boolean_pref(
self.clickToJoinDnaStrandsCheckBox,
joinStrandsCommand_clickToJoinDnaStrands_prefs_key )
self.recursive_clickToJoinDnaStrandsCheckBox = \
PM_CheckBox(pmGroupBox ,
text = 'Recursively join strands',
widgetColumn = 1,
spanWidth = True)
connect_checkbox_with_boolean_pref(
self.recursive_clickToJoinDnaStrandsCheckBox,
joinStrandsCommand_recursive_clickToJoinDnaStrands_prefs_key)
if not env.prefs[joinStrandsCommand_clickToJoinDnaStrands_prefs_key]:
self.recursive_clickToJoinDnaStrandsCheckBox.setEnabled(False)
def _loadJoinOptionsGroupbox(self, pmGroupBox):
"""
Load widgets in this group box.
"""
self.clickToJoinDnaStrandsCheckBox = \
PM_CheckBox(pmGroupBox ,
text = 'Click on strand to join',
widgetColumn = 0,
spanWidth = True)
connect_checkbox_with_boolean_pref(
self.clickToJoinDnaStrandsCheckBox,
joinStrandsCommand_clickToJoinDnaStrands_prefs_key )
self.recursive_clickToJoinDnaStrandsCheckBox = \
PM_CheckBox(pmGroupBox ,
text = 'Recursively join strands',
widgetColumn = 1,
spanWidth = True)
connect_checkbox_with_boolean_pref(
self.recursive_clickToJoinDnaStrandsCheckBox,
joinStrandsCommand_recursive_clickToJoinDnaStrands_prefs_key)
if not env.prefs[joinStrandsCommand_clickToJoinDnaStrands_prefs_key]:
self.recursive_clickToJoinDnaStrandsCheckBox.setEnabled(False)
def connect_or_disconnect_signals(self, isConnect):
"""
Connect or disconnect widget signals sent to their slot methods.
@param isConnect: If True the widget will send the signals to the slot
method.
@type isConnect: boolean
@see: L{BuildAtoms_Command.connect_or_disconnect_signals} where this is called
"""
if isConnect and self.isAlreadyConnected:
if debug_flags.atom_debug:
print_compact_stack("warning: attempt to connect widgets"\
"in this PM that are already connected." )
return
if not isConnect and self.isAlreadyDisconnected:
if debug_flags.atom_debug:
print_compact_stack("warning: attempt to disconnect widgets"\
"in this PM that are already disconnected.")
return
self.isAlreadyConnected = isConnect
self.isAlreadyDisconnected = not isConnect
if isConnect:
change_connect = self.w.connect
else:
change_connect = self.w.disconnect
change_connect(self.atomChooserComboBox,
SIGNAL("currentIndexChanged(int)"),
self._updateAtomChooserGroupBoxes)
change_connect(self.selectionFilterCheckBox,
SIGNAL("stateChanged(int)"),
self.set_selection_filter)
change_connect(self.showSelectedAtomInfoCheckBox,
SIGNAL("stateChanged(int)"),
self.toggle_selectedAtomPosGroupBox)
change_connect(self.xCoordOfSelectedAtom,
SIGNAL("valueChanged(double)"),
self._moveSelectedAtom)
change_connect(self.yCoordOfSelectedAtom,
SIGNAL("valueChanged(double)"),
self._moveSelectedAtom)
change_connect(self.zCoordOfSelectedAtom,
SIGNAL("valueChanged(double)"),
self._moveSelectedAtom)
connect_checkbox_with_boolean_pref(self.waterCheckBox,
buildModeWaterEnabled_prefs_key)
connect_checkbox_with_boolean_pref(self.highlightingCheckBox,
buildModeHighlightingEnabled_prefs_key)
def _connect_checkboxes_to_global_prefs_keys(self):
"""
"""
connect_checkbox_with_boolean_pref(self.gridPlaneCheckBox,
PlanePM_showGrid_prefs_key)
connect_checkbox_with_boolean_pref(self.gpDisplayLabels,
PlanePM_showGridLabels_prefs_key)
def _connect_showCursorTextCheckBox(self):
"""
Connect the show cursor text checkbox with user prefs_key.
Overrides
DnaOrCnt_PropertyManager._connect_showCursorTextCheckBox
"""
connect_checkbox_with_boolean_pref(
self.showCursorTextCheckBox ,
dnaSegmentEditCommand_showCursorTextCheckBox_prefs_key)
def _connect_showCursorTextCheckBox(self):
"""
Connect the show cursor text checkbox with user prefs_key.
Overrides
DnaOrCnt_PropertyManager._connect_showCursorTextCheckBox
"""
connect_checkbox_with_boolean_pref(
self.showCursorTextCheckBox,
insertNanotubeEditCommand_showCursorTextCheckBox_prefs_key)
def _loadSelectionOptionsGroupBox(self, inPmGroupBox):
"""
Load widgets in the Selection Options group box.
@param inPmGroupBox: The Selection Options box in the PM
@type inPmGroupBox: L{PM_GroupBox}
"""
self.selectionFilterCheckBox = \
PM_CheckBox( inPmGroupBox,
text = "Enable atom selection filter",
widgetColumn = 0,
state = Qt.Unchecked )
self.selectionFilterCheckBox.setDefaultValue(False)
self.filterlistLE = PM_LineEdit(inPmGroupBox,
label="",
text="",
setAsDefault=False,
spanWidth=True)
self.filterlistLE.setReadOnly(True)
if self.selectionFilterCheckBox.isChecked():
self.filterlistLE.setEnabled(True)
else:
self.filterlistLE.setEnabled(False)
self.showSelectedAtomInfoCheckBox = \
PM_CheckBox(
inPmGroupBox,
text = "Show Selected Atom Info",
widgetColumn = 0,
state = Qt.Unchecked)
self.selectedAtomPosGroupBox = \
PM_GroupBox( inPmGroupBox, title = "")
self._loadSelectedAtomPosGroupBox(self.selectedAtomPosGroupBox)
self.toggle_selectedAtomPosGroupBox(show=0)
self.enable_or_disable_selectedAtomPosGroupBox(bool_enable=False)
self.reshapeSelectionCheckBox = \
PM_CheckBox( inPmGroupBox,
text = 'Dragging reshapes selection',
widgetColumn = 0,
state = Qt.Unchecked )
connect_checkbox_with_boolean_pref(self.reshapeSelectionCheckBox,
reshapeAtomsSelection_prefs_key)
env.prefs[reshapeAtomsSelection_prefs_key] = False
self.waterCheckBox = \
PM_CheckBox( inPmGroupBox,
text = "Z depth filter (water surface)",
widgetColumn = 0,
state = Qt.Unchecked )
def _loadSelectionOptionsGroupBox(self, inPmGroupBox):
"""
Load widgets in the Selection Options group box.
@param inPmGroupBox: The Selection Options box in the PM
@type inPmGroupBox: L{PM_GroupBox}
"""
self.selectionFilterCheckBox = \
PM_CheckBox( inPmGroupBox,
text = "Enable atom selection filter",
widgetColumn = 0,
state = Qt.Unchecked )
self.selectionFilterCheckBox.setDefaultValue(False)
self.filterlistLE = PM_LineEdit( inPmGroupBox,
label = "",
text = "",
setAsDefault = False,
spanWidth = True )
self.filterlistLE.setReadOnly(True)
if self.selectionFilterCheckBox.isChecked():
self.filterlistLE.setEnabled(True)
else:
self.filterlistLE.setEnabled(False)
self.showSelectedAtomInfoCheckBox = \
PM_CheckBox(
inPmGroupBox,
text = "Show Selected Atom Info",
widgetColumn = 0,
state = Qt.Unchecked)
self.selectedAtomPosGroupBox = \
PM_GroupBox( inPmGroupBox, title = "")
self._loadSelectedAtomPosGroupBox(self.selectedAtomPosGroupBox)
self.toggle_selectedAtomPosGroupBox(show = 0)
self.enable_or_disable_selectedAtomPosGroupBox( bool_enable = False)
self.reshapeSelectionCheckBox = \
PM_CheckBox( inPmGroupBox,
text = 'Dragging reshapes selection',
widgetColumn = 0,
state = Qt.Unchecked )
connect_checkbox_with_boolean_pref( self.reshapeSelectionCheckBox,
reshapeAtomsSelection_prefs_key )
env.prefs[reshapeAtomsSelection_prefs_key] = False
self.waterCheckBox = \
PM_CheckBox( inPmGroupBox,
text = "Z depth filter (water surface)",
widgetColumn = 0,
state = Qt.Unchecked )
def _connect_checkboxes_to_global_prefs_keys(self):
"""
"""
connect_checkbox_with_boolean_pref(
self.gridPlaneCheckBox ,
PlanePM_showGrid_prefs_key)
connect_checkbox_with_boolean_pref(
self.gpDisplayLabels,
PlanePM_showGridLabels_prefs_key)
def __init__(self, widgets, checkbox = None, checkbox_prefs_key = None):
"""
Set the data widgets, and if given, the checkbox widget and its prefs key, both optional.
If checkbox and its prefs_key are both there, connect them. If neither is provided, always update.
"""
self.watch_motion_buttongroup, self.update_number_spinbox, self.update_units_combobox = widgets
self.checkbox = checkbox
self.checkbox_prefs_key = checkbox_prefs_key
if checkbox and checkbox_prefs_key:
from widgets.prefs_widgets import connect_checkbox_with_boolean_pref
connect_checkbox_with_boolean_pref(checkbox , checkbox_prefs_key)
def _addCheckBoxes(self, paramsForCheckBoxes):
"""
Creates PM_CheckBoxes within the groupbox and also connects each one
with its individual prefs key.
"""
for checkBoxText, prefs_key in paramsForCheckBoxes:
checkBox = PM_CheckBox(self, text=checkBoxText, widgetColumn=self._checkBoxColumn, state=Qt.Checked)
connect_checkbox_with_boolean_pref(checkBox, prefs_key)
self.checkBoxes.append(checkBox)
def __init__(self, widgets, checkbox=None, checkbox_prefs_key=None):
"""
Set the data widgets, and if given, the checkbox widget and its prefs key, both optional.
If checkbox and its prefs_key are both there, connect them. If neither is provided, always update.
"""
self.watch_motion_buttongroup, self.update_number_spinbox, self.update_units_combobox = widgets
self.checkbox = checkbox
self.checkbox_prefs_key = checkbox_prefs_key
if checkbox and checkbox_prefs_key:
from widgets.prefs_widgets import connect_checkbox_with_boolean_pref
connect_checkbox_with_boolean_pref(checkbox, checkbox_prefs_key)
def connect_or_disconnect_signals(self, isConnect):
"""
Connect or disconnect widget signals sent to their slot methods.
@param isConnect: If True the widget will send the signals to the slot
method.
@type isConnect: boolean
@see: L{BuildAtoms_Command.connect_or_disconnect_signals} where this is called
"""
if isConnect and self.isAlreadyConnected:
if debug_flags.atom_debug:
print_compact_stack("warning: attempt to connect widgets"\
"in this PM that are already connected." )
return
if not isConnect and self.isAlreadyDisconnected:
if debug_flags.atom_debug:
print_compact_stack("warning: attempt to disconnect widgets"\
"in this PM that are already disconnected.")
return
self.isAlreadyConnected = isConnect
self.isAlreadyDisconnected = not isConnect
if isConnect:
change_connect = self.w.connect
else:
change_connect = self.w.disconnect
change_connect(self.atomChooserComboBox,
SIGNAL("currentIndexChanged(int)"),
self._updateAtomChooserGroupBoxes)
change_connect(self.selectionFilterCheckBox,
SIGNAL("stateChanged(int)"), self.set_selection_filter)
change_connect(self.showSelectedAtomInfoCheckBox,
SIGNAL("stateChanged(int)"),
self.toggle_selectedAtomPosGroupBox)
change_connect(self.xCoordOfSelectedAtom,
SIGNAL("valueChanged(double)"), self._moveSelectedAtom)
change_connect(self.yCoordOfSelectedAtom,
SIGNAL("valueChanged(double)"), self._moveSelectedAtom)
change_connect(self.zCoordOfSelectedAtom,
SIGNAL("valueChanged(double)"), self._moveSelectedAtom)
connect_checkbox_with_boolean_pref(self.waterCheckBox,
buildModeWaterEnabled_prefs_key)
connect_checkbox_with_boolean_pref(
self.highlightingCheckBox, buildModeHighlightingEnabled_prefs_key)
def _loadBreakOptionsGroupbox(self, pmGroupBox):
"""
Load widgets in this group box.
"""
self.assignColorToBrokenDnaStrandsCheckBox = \
PM_CheckBox(pmGroupBox ,
text = 'Assign new color to broken strands',
widgetColumn = 1 )
connect_checkbox_with_boolean_pref(
self.assignColorToBrokenDnaStrandsCheckBox,
assignColorToBrokenDnaStrands_prefs_key )
def connect_or_disconnect_signals(self, isConnect):
"""
Connect or disconnect widget signals sent to their slot methods.
This can be overridden in subclasses. By default it does nothing.
@param isConnect: If True the widget will send the signals to the slot
method.
@type isConnect: boolean
"""
#TODO: This is a temporary fix for a bug. When you invoke a
#temporary mode entering such a temporary mode keeps the signals of
#PM from the previous mode connected (
#but while exiting that temporary mode and reentering the
#previous mode, it atucally reconnects the signal! This gives rise to
#lots of bugs. This needs more general fix in Temporary mode API.
# -- Ninad 2008-01-09 (similar comment exists in MovePropertyManager.py
if isConnect and self.isAlreadyConnected:
if debug_flags.atom_debug:
print_compact_stack("warning: attempt to connect widgets"\
"in this PM that are already connected." )
return
if not isConnect and self.isAlreadyDisconnected:
if debug_flags.atom_debug:
print_compact_stack("warning: attempt to disconnect widgets"\
"in this PM that are already disconnected.")
return
self.isAlreadyConnected = isConnect
self.isAlreadyDisconnected = not isConnect
if isConnect:
change_connect = self.win.connect
else:
change_connect = self.win.disconnect
self.segmentListWidget.connect_or_disconnect_signals(isConnect)
change_connect(self.addSegmentsToolButton,
SIGNAL("toggled(bool)"),
self.activateAddSegmentsTool)
change_connect(self.removeSegmentsToolButton,
SIGNAL("toggled(bool)"),
self.activateRemoveSegmentsTool)
change_connect(self.makeCrossoverPushButton,
SIGNAL("clicked()"),
self._makeAllCrossovers)
connect_checkbox_with_boolean_pref(
self.crossoversBetGivenSegmentsOnly_checkBox,
makeCrossoversCommand_crossoverSearch_bet_given_segments_only_prefs_key)
def connect_or_disconnect_signals(self, isConnect):
"""
Connect or disconnect widget signals sent to their slot methods.
This can be overridden in subclasses. By default it does nothing.
@param isConnect: If True the widget will send the signals to the slot
method.
@type isConnect: boolean
"""
#TODO: This is a temporary fix for a bug. When you invoke a
#temporary mode entering such a temporary mode keeps the signals of
#PM from the previous mode connected (
#but while exiting that temporary mode and reentering the
#previous mode, it atucally reconnects the signal! This gives rise to
#lots of bugs. This needs more general fix in Temporary mode API.
# -- Ninad 2008-01-09 (similar comment exists in MovePropertyManager.py
if isConnect and self.isAlreadyConnected:
if debug_flags.atom_debug:
print_compact_stack("warning: attempt to connect widgets"\
"in this PM that are already connected." )
return
if not isConnect and self.isAlreadyDisconnected:
if debug_flags.atom_debug:
print_compact_stack("warning: attempt to disconnect widgets"\
"in this PM that are already disconnected.")
return
self.isAlreadyConnected = isConnect
self.isAlreadyDisconnected = not isConnect
if isConnect:
change_connect = self.win.connect
else:
change_connect = self.win.disconnect
self.segmentListWidget.connect_or_disconnect_signals(isConnect)
change_connect(self.addSegmentsToolButton, SIGNAL("toggled(bool)"),
self.activateAddSegmentsTool)
change_connect(self.removeSegmentsToolButton, SIGNAL("toggled(bool)"),
self.activateRemoveSegmentsTool)
change_connect(self.makeCrossoverPushButton, SIGNAL("clicked()"),
self._makeAllCrossovers)
connect_checkbox_with_boolean_pref(
self.crossoversBetGivenSegmentsOnly_checkBox,
makeCrossoversCommand_crossoverSearch_bet_given_segments_only_prefs_key
)
def _addCheckBoxes(self, paramsForCheckBoxes):
"""
Creates PM_CheckBoxes within the groupbox and also connects each one
with its individual prefs key.
"""
for checkBoxText, prefs_key in paramsForCheckBoxes:
checkBox = \
PM_CheckBox( self,
text = checkBoxText,
widgetColumn = self._checkBoxColumn,
state = Qt.Checked)
connect_checkbox_with_boolean_pref(checkBox, prefs_key)
self.checkBoxes.append(checkBox)
def _loadBreakOptionsGroupbox(self, pmGroupBox):
"""
Load widgets in this group box.
"""
self.assignColorToBrokenDnaStrandsCheckBox = \
PM_CheckBox(pmGroupBox ,
text = 'Assign new color to broken strands',
widgetColumn = 0,
spanWidth = True)
connect_checkbox_with_boolean_pref(
self.assignColorToBrokenDnaStrandsCheckBox,
assignColorToBrokenDnaStrands_prefs_key )
self.basesBeforeNextBreakSpinBox = \
PM_SpinBox( pmGroupBox,
label = "Break Every:",
value = 3,
setAsDefault = False,
minimum = 1,
maximum = 10000,
suffix = " bases"
)
connect_spinBox_with_pref(
self.basesBeforeNextBreakSpinBox,
breakStrandsCommand_numberOfBasesBeforeNextBreak_prefs_key)
self.breakAllStrandsButton = PM_PushButton(
pmGroupBox,
label = "",
text = "do it" )
self._dnaStrandChooserGroupBox = PM_ObjectChooser(
pmGroupBox,
self.command,
modelObjectType = self.win.assy.DnaStrand,
title = "Choose strands " )
if not DEBUG_BREAK_OPTIONS_FEATURE:
self._dnaStrandChooserGroupBox.hide()
self.breakAllStrandsButton.hide()
self.basesBeforeNextBreakSpinBox.hide()
def _loadGroupBox2(self, pmGroupBox):
"""
Load widgets in group box.
"""
#background color combo box
self.backgroundColorComboBox = \
PM_ComboBox( pmGroupBox,
label = "Color:",
spanWidth = False)
self._loadBackgroundColorItems()
self.enableFogCheckBox = \
PM_CheckBox( pmGroupBox, text = "Enable fog" )
connect_checkbox_with_boolean_pref( self.enableFogCheckBox, fogEnabled_prefs_key )
return
def _loadBreakOptionsGroupbox(self, pmGroupBox):
"""
Load widgets in this group box.
"""
self.assignColorToBrokenDnaStrandsCheckBox = \
PM_CheckBox(pmGroupBox ,
text = 'Assign new color to broken strands',
widgetColumn = 0,
spanWidth = True)
connect_checkbox_with_boolean_pref(
self.assignColorToBrokenDnaStrandsCheckBox,
assignColorToBrokenDnaStrands_prefs_key)
self.basesBeforeNextBreakSpinBox = \
PM_SpinBox( pmGroupBox,
label = "Break Every:",
value = 3,
setAsDefault = False,
minimum = 1,
maximum = 10000,
suffix = " bases"
)
connect_spinBox_with_pref(
self.basesBeforeNextBreakSpinBox,
breakStrandsCommand_numberOfBasesBeforeNextBreak_prefs_key)
self.breakAllStrandsButton = PM_PushButton(pmGroupBox,
label="",
text="do it")
self._dnaStrandChooserGroupBox = PM_ObjectChooser(
pmGroupBox,
self.command,
modelObjectType=self.win.assy.DnaStrand,
title="Choose strands ")
if not DEBUG_BREAK_OPTIONS_FEATURE:
self._dnaStrandChooserGroupBox.hide()
self.breakAllStrandsButton.hide()
self.basesBeforeNextBreakSpinBox.hide()
def _connect_checkboxes_to_global_prefs_keys(self, isConnect=True):
"""
#doc
"""
if not isConnect:
return
#ORDER of items in tuples checkboxes and prefs_keys is IMPORTANT!
checkboxes = (self.arrowsOnThreePrimeEnds_checkBox,
self.arrowsOnFivePrimeEnds_checkBox,
self.strandThreePrimeArrowheadsCustomColorCheckBox,
self.strandFivePrimeArrowheadsCustomColorCheckBox,
self.arrowsOnBackBones_checkBox)
prefs_keys = (self._prefs_key_arrowsOnThreePrimeEnds(),
self._prefs_key_arrowsOnFivePrimeEnds(),
self._prefs_key_useCustomColorForThreePrimeArrowheads(),
self._prefs_key_useCustomColorForFivePrimeArrowheads(),
arrowsOnBackBones_prefs_key)
for checkbox, prefs_key in zip(checkboxes, prefs_keys):
connect_checkbox_with_boolean_pref(checkbox, prefs_key)
return
def __init__(self, win):
QDialog.__init__(self, win) # win is parent.
self.setupUi(self)
self.watch_motion_buttongroup = QButtonGroup()
self.watch_motion_buttongroup.setExclusive(True)
for obj in self.watch_motion_groupbox.children():
if isinstance(obj, QAbstractButton):
self.watch_motion_buttongroup.addButton(obj)
#fix some icon problems
self.setWindowIcon(
geticon('ui/border/MinimizeEnergy.png'))
self.connect(self.cancel_btn,
SIGNAL("clicked()"),
self.cancel_btn_clicked)
self.connect(self.ok_btn,
SIGNAL("clicked()"),
self.ok_btn_clicked)
self.connect(self.restore_btn,
SIGNAL("clicked()"),
self.restore_defaults_btn_clicked)
self.whatsthis_btn.setIcon(
geticon('ui/actions/Properties Manager/WhatsThis.png'))
self.whatsthis_btn.setIconSize(QSize(22, 22))
self.whatsthis_btn.setToolTip('Enter "What\'s This?" help mode')
self.connect(self.whatsthis_btn,
SIGNAL("clicked()"),
QWhatsThis.enterWhatsThisMode)
connect_checkbox_with_boolean_pref(
self.electrostaticsForDnaDuringMinimize_checkBox,
electrostaticsForDnaDuringMinimize_prefs_key)
connect_checkbox_with_boolean_pref(
self.enableNeighborSearching_check_box,
neighborSearchingInGromacs_prefs_key)
self.connect(self.minimize_engine_combobox, SIGNAL("activated(int)"), self.update_minimize_engine)
self.minimize_engine_combobox.setCurrentIndex(
env.prefs[Minimize_minimizationEngine_prefs_key])
self.connect(self.endRmsDoubleSpinBox, SIGNAL("valueChanged(double)"), self.changeEndRms)
self.connect(self.endMaxDoubleSpinBox, SIGNAL("valueChanged(double)"), self.changeEndMax)
self.connect(self.cutoverRmsDoubleSpinBox, SIGNAL("valueChanged(double)"), self.changeCutoverRms)
self.connect(self.cutoverMaxDoubleSpinBox, SIGNAL("valueChanged(double)"), self.changeCutoverMax)
self.endRmsDoubleSpinBox.setSpecialValueText("Automatic")
self.endMaxDoubleSpinBox.setSpecialValueText("Automatic")
self.cutoverRmsDoubleSpinBox.setSpecialValueText("Automatic")
self.cutoverMaxDoubleSpinBox.setSpecialValueText("Automatic")
self.win = win
self.previousParams = None
self.setup_ruc()
self.seltype = 'All'
self.minimize_selection_enabled = True #bruce 080513
# Assign "What's This" text for all widgets.
from commands.MinimizeEnergy.WhatsThisText_for_MinimizeEnergyDialog import whatsThis_MinimizeEnergyDialog
whatsThis_MinimizeEnergyDialog(self)
self.update_widgets() # to make sure self attrs are set
return
def connect_or_disconnect_signals(self, isConnect):
"""
Connect or disconnect widget signals sent to their slot methods.
This can be overridden in subclasses. By default it does nothing.
@param isConnect: If True the widget will send the signals to the slot
method.
@type isConnect: boolean
"""
if isConnect:
change_connect = self.win.connect
else:
change_connect = self.win.disconnect
# Favorite buttons signal-slot connections.
change_connect( self.applyFavoriteButton,
SIGNAL("clicked()"),
self.applyFavorite)
change_connect( self.addFavoriteButton,
SIGNAL("clicked()"),
self.addFavorite)
change_connect( self.deleteFavoriteButton,
SIGNAL("clicked()"),
self.deleteFavorite)
change_connect( self.saveFavoriteButton,
SIGNAL("clicked()"),
self.saveFavorite)
change_connect( self.loadFavoriteButton,
SIGNAL("clicked()"),
self.loadFavorite)
# Current display settings groupbox.
change_connect( self.dnaRenditionComboBox,
SIGNAL("currentIndexChanged(int)"),
self.change_dnaRendition )
# Axis options.
change_connect( self.axisShapeComboBox,
SIGNAL("currentIndexChanged(int)"),
self.win.userPrefs.change_dnaStyleAxisShape )
change_connect( self.axisScaleDoubleSpinBox,
SIGNAL("valueChanged(double)"),
self.win.userPrefs.change_dnaStyleAxisScale )
change_connect( self.axisColorComboBox,
SIGNAL("currentIndexChanged(int)"),
self.win.userPrefs.change_dnaStyleAxisColor )
change_connect( self.axisEndingStyleComboBox,
SIGNAL("currentIndexChanged(int)"),
self.win.userPrefs.change_dnaStyleAxisEndingStyle )
# Strands options.
change_connect( self.strandsShapeComboBox,
SIGNAL("currentIndexChanged(int)"),
self.win.userPrefs.change_dnaStyleStrandsShape )
change_connect( self.strandsScaleDoubleSpinBox,
SIGNAL("valueChanged(double)"),
self.win.userPrefs.change_dnaStyleStrandsScale )
change_connect( self.strandsColorComboBox,
SIGNAL("currentIndexChanged(int)"),
self.win.userPrefs.change_dnaStyleStrandsColor )
change_connect( self.strandsArrowsComboBox,
SIGNAL("currentIndexChanged(int)"),
self.win.userPrefs.change_dnaStyleStrandsArrows )
# Structs options.
change_connect( self.strutsShapeComboBox,
SIGNAL("currentIndexChanged(int)"),
self.win.userPrefs.change_dnaStyleStrutsShape )
change_connect( self.strutsScaleDoubleSpinBox,
SIGNAL("valueChanged(double)"),
self.win.userPrefs.change_dnaStyleStrutsScale )
change_connect( self.strutsColorComboBox,
SIGNAL("currentIndexChanged(int)"),
self.win.userPrefs.change_dnaStyleStrutsColor )
# Nucleotides options.
change_connect( self.nucleotidesShapeComboBox,
SIGNAL("currentIndexChanged(int)"),
self.win.userPrefs.change_dnaStyleBasesShape )
change_connect( self.nucleotidesScaleDoubleSpinBox,
SIGNAL("valueChanged(double)"),
self.win.userPrefs.change_dnaStyleBasesScale )
change_connect( self.nucleotidesColorComboBox,
SIGNAL("currentIndexChanged(int)"),
self.win.userPrefs.change_dnaStyleBasesColor )
connect_checkbox_with_boolean_pref(
self.dnaStyleBasesDisplayLettersCheckBox,
dnaStyleBasesDisplayLetters_prefs_key)
# Dna Strand labels option.
change_connect( self.standLabelColorComboBox,
SIGNAL("currentIndexChanged(int)"),
self.change_dnaStrandLabelsDisplay )
def connect_or_disconnect_signals(self, isConnect):
"""
Connect or disconnect widget signals sent to their slot methods.
This can be overridden in subclasses. By default it does nothing.
@param isConnect: If True the widget will send the signals to the slot
method.
@type isConnect: boolean
"""
if isConnect:
change_connect = self.win.connect
else:
change_connect = self.win.disconnect
# Favorite buttons signal-slot connections.
change_connect(self.applyFavoriteButton, SIGNAL("clicked()"),
self.applyFavorite)
change_connect(self.addFavoriteButton, SIGNAL("clicked()"),
self.addFavorite)
change_connect(self.deleteFavoriteButton, SIGNAL("clicked()"),
self.deleteFavorite)
change_connect(self.saveFavoriteButton, SIGNAL("clicked()"),
self.saveFavorite)
change_connect(self.loadFavoriteButton, SIGNAL("clicked()"),
self.loadFavorite)
# Current display settings groupbox.
change_connect(self.dnaRenditionComboBox,
SIGNAL("currentIndexChanged(int)"),
self.change_dnaRendition)
# Axis options.
change_connect(self.axisShapeComboBox,
SIGNAL("currentIndexChanged(int)"),
self.win.userPrefs.change_dnaStyleAxisShape)
change_connect(self.axisScaleDoubleSpinBox,
SIGNAL("valueChanged(double)"),
self.win.userPrefs.change_dnaStyleAxisScale)
change_connect(self.axisColorComboBox,
SIGNAL("currentIndexChanged(int)"),
self.win.userPrefs.change_dnaStyleAxisColor)
change_connect(self.axisEndingStyleComboBox,
SIGNAL("currentIndexChanged(int)"),
self.win.userPrefs.change_dnaStyleAxisEndingStyle)
# Strands options.
change_connect(self.strandsShapeComboBox,
SIGNAL("currentIndexChanged(int)"),
self.win.userPrefs.change_dnaStyleStrandsShape)
change_connect(self.strandsScaleDoubleSpinBox,
SIGNAL("valueChanged(double)"),
self.win.userPrefs.change_dnaStyleStrandsScale)
change_connect(self.strandsColorComboBox,
SIGNAL("currentIndexChanged(int)"),
self.win.userPrefs.change_dnaStyleStrandsColor)
change_connect(self.strandsArrowsComboBox,
SIGNAL("currentIndexChanged(int)"),
self.win.userPrefs.change_dnaStyleStrandsArrows)
# Structs options.
change_connect(self.strutsShapeComboBox,
SIGNAL("currentIndexChanged(int)"),
self.win.userPrefs.change_dnaStyleStrutsShape)
change_connect(self.strutsScaleDoubleSpinBox,
SIGNAL("valueChanged(double)"),
self.win.userPrefs.change_dnaStyleStrutsScale)
change_connect(self.strutsColorComboBox,
SIGNAL("currentIndexChanged(int)"),
self.win.userPrefs.change_dnaStyleStrutsColor)
# Nucleotides options.
change_connect(self.nucleotidesShapeComboBox,
SIGNAL("currentIndexChanged(int)"),
self.win.userPrefs.change_dnaStyleBasesShape)
change_connect(self.nucleotidesScaleDoubleSpinBox,
SIGNAL("valueChanged(double)"),
self.win.userPrefs.change_dnaStyleBasesScale)
change_connect(self.nucleotidesColorComboBox,
SIGNAL("currentIndexChanged(int)"),
self.win.userPrefs.change_dnaStyleBasesColor)
connect_checkbox_with_boolean_pref(
self.dnaStyleBasesDisplayLettersCheckBox,
dnaStyleBasesDisplayLetters_prefs_key)
# Dna Strand labels option.
change_connect(self.standLabelColorComboBox,
SIGNAL("currentIndexChanged(int)"),
self.change_dnaStrandLabelsDisplay)
def __init__(self, win, part, previous_movie = None, suffix = ""):
"""
use previous_movie (if passed) for default values,
otherwise use the same ones last ok'd by user
(whether or not that sim got aborted), or default values if that never happened in this session;
on success or failure, make a new Movie and store it as self.movie
"""
QDialog.__init__(self, win) # win is parent.
self.setupUi(self)
self.setWindowIcon(geticon('ui/border/RunDynamics.png'))
self.whatsthis_btn.setIcon(
geticon('ui/actions/Properties Manager/WhatsThis.png'))
self.whatsthis_btn.setIconSize(QSize(22, 22))
self.whatsthis_btn.setToolTip('Enter "What\'s This?" help mode')
self.connect(self.whatsthis_btn,
SIGNAL("clicked()"),
QWhatsThis.enterWhatsThisMode)
self.watch_motion_buttongroup = QButtonGroup()
self.watch_motion_buttongroup.setExclusive(True)
for obj in self.watch_motion_groupbox.children():
if isinstance(obj, QAbstractButton):
self.watch_motion_buttongroup.addButton(obj)
self.connect(self.run_sim_btn,SIGNAL("clicked()"),self.createMoviePressed)
self.connect(self.cancel_btn,SIGNAL("clicked()"),self.close)
qt4todo('self.connect(self.watch_motion_groupbox,SIGNAL("toggled(bool)"),self.setEnabled) ???')
self.watch_motion_groupbox.setEnabled(True)
## self.part = part
# not yet needed, though in future we might display info
# about this Part in the dialog, to avoid confusion
# if it's not the main Part.
connect_checkbox_with_boolean_pref(self.potential_energy_checkbox,
Potential_energy_tracefile_prefs_key)
connect_checkbox_with_boolean_pref(
self.electrostaticsForDnaDuringDynamics_checkBox,
electrostaticsForDnaDuringDynamics_prefs_key)
self.assy = part.assy # used only for assy.filename
self.suffix = suffix
self.previous_movie = previous_movie or _stickyParams or Movie(self.assy) # used only for its parameter settings
# note: as of bruce 060601 fixing bug 1840, previous_movie is no longer ever passed by caller.
self.movie = Movie(self.assy) # public attr used by client code after we return; always a Movie even on failure.
# (we need it here since no extra method runs on failure, tho that could probably be fixed)
# bruce 050325 changes:
# We make a new Movie here (but only when we return with success).
# But we use default param settings from prior movie.
# Caller should pass info about default filename (including uniqueness
# when on selection or in clipboard item) -- i.e. the suffix.
# We should set the params and filename using a Movie method, or warn it we did so,
# or do them in its init... not yet cleaned up. ###@@@
# self.movie is now a public attribute.
#bruce 050329 comment: couldn't we set .movie to None, until we learn we succeeded? ###e ###@@@
self.setup()
self.watch_motion_groupbox.setWhatsThis(
"""<b>Watch motion in real time</b>
<p>
Enables real time graphical updates during simulation runs.
""")
self.update_number_spinbox.setWhatsThis(
"""<b>Update every <i>n units.</u></b>
<p>
Specify how often to update the model during the simulation.
This allows the user to monitor simulation results while the
simulation is running.
</p>""")
self.update_units_combobox.setWhatsThis(
"""<b>Update every <i>n units.</u></b>
<p>
Specify how often to update the model during the simulation.
This allows the user to monitor simulation results while the
simulation is running.
</p>""")
self.update_every_rbtn.setWhatsThis(
"""<b>Update every <i>n units.</u></b>
<p>
Specify how often to update the model during the simulation.
This allows the user to monitor simulation results while the
simulation is running.</p>""")
self.update_asap_rbtn.setWhatsThis(
"""<b>Update as fast as possible</b>
<p>
Update every 2 seconds, or faster (up to 20x/sec) if it doesn't
slow down the simulation by more than 20%.
</p>""")
self.temperatureSpinBox.setWhatsThis(
"""<b>Temperature</b>
<p>
The temperature of the simulation in Kelvin
(300 K = room temperature)</p>""")
self.totalFramesSpinBox.setWhatsThis(
"""<b>Total frames</b>
<p>
The total number of (movie) frames to create for the simulation run.
</p>""")
self.stepsPerFrameDoubleSpinBox.setWhatsThis(
"""<b>Steps per frame</b>
<p>
The time duration between frames in femtoseconds.
</p>""")
self.setWhatsThis(
"""<b>Run Dynamics</b>
<p>
The is the main dialog for configuring and launching a
Molecular Dynamics simulation run. Specify the simulation parameters
and click <b>Run Simulation</b> to launch.</p>
<p>
<img source=\"ui/actions/Simulation/PlayMovie.png\"><br>
The <b>Play Movie</b> command can be used to play back the
simulation.
</p>""")
if not debug_pref("GROMACS: Enable for Run Dynamics", Choice_boolean_False,
prefs_key=True):
# Hide the Simulation engine groupbox altogether.
self.md_engine_groupbox.setHidden(True)
self.exec_()
def _loadGroupBox3(self, pmGroupBox):
"""
Load widgets in the grid plane group box.
@param pmGroupBox: The grid group box in the PM.
@type pmGroupBox: L{PM_GroupBox}
"""
self.gridPlaneCheckBox = \
PM_CheckBox( pmGroupBox,
text = "Show grid",
widgetColumn = 0,
setAsDefault = True,
spanWidth = True
)
connect_checkbox_with_boolean_pref(
self.gridPlaneCheckBox ,
PlanePM_showGrid_prefs_key)
self.gpXSpacingDoubleSpinBox = \
PM_DoubleSpinBox( pmGroupBox,
label = "X Spacing:",
value = 4.000,
setAsDefault = True,
minimum = 1.00,
maximum = 200.0,
decimals = 3,
singleStep = 1.0,
spanWidth = False)
self.gpYSpacingDoubleSpinBox = \
PM_DoubleSpinBox( pmGroupBox,
label = "Y Spacing:",
value = 4.000,
setAsDefault = True,
minimum = 1.00,
maximum = 200.0,
decimals = 3,
singleStep = 1.0,
spanWidth = False)
lineTypeChoices = [ 'Dotted (default)',
'Dashed',
'Solid' ]
self.gpLineTypeComboBox = \
PM_ComboBox( pmGroupBox ,
label = "Line type:",
choices = lineTypeChoices,
setAsDefault = True)
hhColorList = [ black, orange, red, magenta,
cyan, blue, white, yellow, gray ]
hhColorNames = [ "Black (default)", "Orange", "Red", "Magenta",
"Cyan", "Blue", "White", "Yellow", "Other color..." ]
self.gpColorTypeComboBox = \
PM_ColorComboBox( pmGroupBox,
colorList = hhColorList,
colorNames = hhColorNames,
color = black )
self.pmGroupBox5 = PM_GroupBox( pmGroupBox )
self.gpDisplayLabels =\
PM_CheckBox( self.pmGroupBox5,
text = "Display labels",
widgetColumn = 0,
state = Qt.Unchecked,
setAsDefault = True,
spanWidth = True )
originChoices = [ 'Lower left (default)',
'Upper left',
'Lower right',
'Upper right' ]
self.gpOriginComboBox = \
PM_ComboBox( self.pmGroupBox5 ,
label = "Origin:",
choices = originChoices,
setAsDefault = True )
positionChoices = [ 'Origin axes (default)',
'Plane perimeter' ]
self.gpPositionComboBox = \
PM_ComboBox( self.pmGroupBox5 ,
label = "Position:",
choices = positionChoices,
setAsDefault = True)
self._showHideGPWidgets()
if env.prefs[PlanePM_showGridLabels_prefs_key]:
self.displayLabels = True
self.gpOriginComboBox.setEnabled( True )
self.gpPositionComboBox.setEnabled( True )
else:
self.displayLabels = False
self.gpOriginComboBox.setEnabled( False )
self.gpPositionComboBox.setEnabled( False )
return
def _loadGroupBox3(self, pmGroupBox):
"""
Load widgets in the grid plane group box.
@param pmGroupBox: The grid group box in the PM.
@type pmGroupBox: L{PM_GroupBox}
"""
self.gridPlaneCheckBox = \
PM_CheckBox( pmGroupBox,
text = "Show grid",
widgetColumn = 0,
setAsDefault = True,
spanWidth = True
)
connect_checkbox_with_boolean_pref(self.gridPlaneCheckBox,
PlanePM_showGrid_prefs_key)
self.gpXSpacingDoubleSpinBox = \
PM_DoubleSpinBox( pmGroupBox,
label = "X Spacing:",
value = 4.000,
setAsDefault = True,
minimum = 1.00,
maximum = 200.0,
decimals = 3,
singleStep = 1.0,
spanWidth = False)
self.gpYSpacingDoubleSpinBox = \
PM_DoubleSpinBox( pmGroupBox,
label = "Y Spacing:",
value = 4.000,
setAsDefault = True,
minimum = 1.00,
maximum = 200.0,
decimals = 3,
singleStep = 1.0,
spanWidth = False)
lineTypeChoices = ['Dotted (default)', 'Dashed', 'Solid']
self.gpLineTypeComboBox = \
PM_ComboBox( pmGroupBox ,
label = "Line type:",
choices = lineTypeChoices,
setAsDefault = True)
hhColorList = [
black, orange, red, magenta, cyan, blue, white, yellow, gray
]
hhColorNames = [
"Black (default)", "Orange", "Red", "Magenta", "Cyan", "Blue",
"White", "Yellow", "Other color..."
]
self.gpColorTypeComboBox = \
PM_ColorComboBox( pmGroupBox,
colorList = hhColorList,
colorNames = hhColorNames,
color = black )
self.pmGroupBox5 = PM_GroupBox(pmGroupBox)
self.gpDisplayLabels =\
PM_CheckBox( self.pmGroupBox5,
text = "Display labels",
widgetColumn = 0,
state = Qt.Unchecked,
setAsDefault = True,
spanWidth = True )
originChoices = [
'Lower left (default)', 'Upper left', 'Lower right', 'Upper right'
]
self.gpOriginComboBox = \
PM_ComboBox( self.pmGroupBox5 ,
label = "Origin:",
choices = originChoices,
setAsDefault = True )
positionChoices = ['Origin axes (default)', 'Plane perimeter']
self.gpPositionComboBox = \
PM_ComboBox( self.pmGroupBox5 ,
label = "Position:",
choices = positionChoices,
setAsDefault = True)
self._showHideGPWidgets()
if env.prefs[PlanePM_showGridLabels_prefs_key]:
self.displayLabels = True
self.gpOriginComboBox.setEnabled(True)
self.gpPositionComboBox.setEnabled(True)
else:
self.displayLabels = False
self.gpOriginComboBox.setEnabled(False)
self.gpPositionComboBox.setEnabled(False)
return
