Python stitching Examples

Example #1

#A proper unit test would automatically inspect these results
import wrapper
import shutil
import json
import os
#
cells = 'morebone.json'
#cells='celltest.json'
proto = json.load(open(cells))
outdir = proto.get("outDir")
#
if os.path.exists(outdir):
    shutil.rmtree(outdir)
wrapper.stitching(cells)

Example #2

File: runtests.py Project: gstark307/superstitchous2.0

# A proper unit test would automatically inspect these results
import wrapper
import shutil
import json
import os

#
cells = "morebone.json"
# cells='celltest.json'
proto = json.load(open(cells))
outdir = proto.get("outDir")
#
if os.path.exists(outdir):
    shutil.rmtree(outdir)
wrapper.stitching(cells)

Example #3

File: testaligment.py Project: ICpachong/superstitchous2.0

#
#cells='ScanTest.json'
#cells='bloottest.json'
#cells='celltest.json'
cells='bigbone.json'
proto=json.load(open(cells))
odir = proto["outDir"]
for x in range(95,140,5):
    params = ("_%d" % x)
    proto["maxPeakXY"] = x
    proto["maxPeakX"] = x
    proto["maxPeakY"] = x
    #
    proto["outDir"]=odir+params
    outdir=proto["outDir"]
    if os.path.exists(outdir):
        shutil.rmtree(outdir) 
    useme=params+".json"
    with open(useme,'w') as outfile:
        json.dump(proto,outfile)
    wrapper.stitching(useme)
    inkto='/var/www/localhost/htdocs/foo'+params
    print(outdir)
    if not os.path.exists(inkto):
        os.symlink(outdir,inkto)
    print(inkto)

#wrapper.stitching(cells)
#D:\ScanTest2

Example #4

File: testaligment.py Project: jgqwhucs/superstitchous2.0

#print(misc.imread(other).shape)
#
#cells='ScanTest.json'
#cells='bloottest.json'
#cells='celltest.json'
cells = 'bigbone.json'
proto = json.load(open(cells))
odir = proto["outDir"]
for x in range(95, 140, 5):
    params = ("_%d" % x)
    proto["maxPeakXY"] = x
    proto["maxPeakX"] = x
    proto["maxPeakY"] = x
    #
    proto["outDir"] = odir + params
    outdir = proto["outDir"]
    if os.path.exists(outdir):
        shutil.rmtree(outdir)
    useme = params + ".json"
    with open(useme, 'w') as outfile:
        json.dump(proto, outfile)
    wrapper.stitching(useme)
    inkto = '/var/www/localhost/htdocs/foo' + params
    print(outdir)
    if not os.path.exists(inkto):
        os.symlink(outdir, inkto)
    print(inkto)

#wrapper.stitching(cells)
#D:\ScanTest2