def __init__(self,
inspec,
parent=None,
abssys_dir=None,
absid_list=None,
norm=True,
srch_id=True,
id_dir='ID_LINES/'):
QtGui.QMainWindow.__init__(self, parent)
'''
spec = Spectrum1D
second_file = Second spectrum file (e.g. COS + STIS)
'''
# Build a widget combining several others
self.main_widget = QtGui.QWidget()
# Status bar
self.create_status_bar()
# Initialize
if absid_list is None:
# Automatically search for ID files
if srch_id:
absid_list = glob.glob(id_dir + '*id.fits')
else:
absid_list = []
# Grab the pieces and tie together
self.abssys_widg = xspw.AbsSysWidget(absid_list)
self.pltline_widg = xspw.PlotLinesWidget(status=self.statusBar)
self.spec_widg = xspw.ExamineSpecWidget(
inspec,
status=self.statusBar,
llist=self.pltline_widg.llist,
norm=norm,
abs_sys=self.abssys_widg.abs_sys)
self.pltline_widg.spec_widg = self.spec_widg
# Connections
self.spec_widg.canvas.mpl_connect('button_press_event', self.on_click)
self.spec_widg.canvas.mpl_connect('key_press_event', self.on_key)
self.abssys_widg.refine_button.clicked.connect(self.refine_abssys)
# Layout
anly_widg = QtGui.QWidget()
anly_widg.setMaximumWidth(300)
anly_widg.setMinimumWidth(150)
vbox = QtGui.QVBoxLayout()
vbox.addWidget(self.pltline_widg)
vbox.addWidget(self.abssys_widg)
anly_widg.setLayout(vbox)
hbox = QtGui.QHBoxLayout()
hbox.addWidget(self.spec_widg)
hbox.addWidget(anly_widg)
self.main_widget.setLayout(hbox)
# Point MainWindow
self.setCentralWidget(self.main_widget)
def __init__(self, ispec, parent=None, zsys=None, norm=None):
QtGui.QMainWindow.__init__(self, parent)
'''
Parameters
--------------
spec = Spectrum1D or tuple of arrays
Input spectrum. If tuple then (wave,fx) or (wave,fx,sig)
'''
from linetools.lists.linelist import LineList
#reload(xxgu)
#reload(xspw)
# INIT
spec, _ = xxgu.read_spec(ispec)
#xdb.set_trace()
#
mpl.rcParams[
'agg.path.chunksize'] = 20000 # Needed to avoid carsh in large spectral files
# Build a widget combining several others
self.main_widget = QtGui.QWidget()
# Status bar
self.create_status_bar()
# Grab the pieces and tie together
self.pltline_widg = xspw.PlotLinesWidget(status=self.statusBar,
init_z=zsys)
self.pltline_widg.setMaximumWidth(300)
# Hook the spec widget to Plot Line
self.spec_widg = xspw.ExamineSpecWidget(spec,
status=self.statusBar,
llist=self.pltline_widg.llist,
zsys=zsys,
norm=norm)
self.pltline_widg.spec_widg = self.spec_widg
self.spec_widg.canvas.mpl_connect('button_press_event', self.on_click)
extras = QtGui.QWidget()
extras.setMaximumWidth(130)
vbox = QtGui.QVBoxLayout()
qbtn = QtGui.QPushButton('Quit', self)
qbtn.clicked.connect(self.quit)
vbox.addWidget(self.pltline_widg)
vbox.addWidget(qbtn)
extras.setLayout(vbox)
hbox = QtGui.QHBoxLayout()
hbox.addWidget(self.spec_widg)
hbox.addWidget(extras)
self.main_widget.setLayout(hbox)
# Point MainWindow
self.setCentralWidget(self.main_widget)
def __init__(self, spec, parent=None, zsys=None, norm=None):
QtGui.QMainWindow.__init__(self, parent)
'''
spec = Spectrum1D
'''
mpl.rcParams['agg.path.chunksize'] = 20000 # Needed to avoid carsh in large spectral files
# Build a widget combining several others
self.main_widget = QtGui.QWidget()
# Status bar
self.create_status_bar()
# Grab the pieces and tie together
self.pltline_widg = xspw.PlotLinesWidget(status=self.statusBar, init_z=zsys)
self.pltline_widg.setMaximumWidth(300)
# Hook the spec widget to Plot Line
self.spec_widg = xspw.ExamineSpecWidget(spec,status=self.statusBar,
llist=self.pltline_widg.llist,
zsys=zsys, norm=norm)
self.pltline_widg.spec_widg = self.spec_widg
self.spec_widg.canvas.mpl_connect('button_press_event', self.on_click)
extras = QtGui.QWidget()
extras.setMaximumWidth(130)
vbox = QtGui.QVBoxLayout()
qbtn = QtGui.QPushButton('Quit', self)
qbtn.clicked.connect(self.quit)
vbox.addWidget(self.pltline_widg)
vbox.addWidget(qbtn)
extras.setLayout(vbox)
hbox = QtGui.QHBoxLayout()
hbox.addWidget(self.spec_widg)
hbox.addWidget(extras)
self.main_widget.setLayout(hbox)
# Point MainWindow
self.setCentralWidget(self.main_widget)
def __init__(self, ispec, z=None, parent=None, llist=None, norm=True,
vmnx=[-300., 300.]*u.km/u.s, abs_sys=None, outfil='dum_ID.fits',
sel_wv=None):
'''
spec = Filename or Spectrum1D
Norm: Bool (False)
Normalized spectrum?
abs_sys: AbsSystem
Absorption system class
sel_wv: Selected wavelength. Used to inspect a single, unknown line
'''
super(XVelPltGui, self).__init__(parent)
# Initialize
self.abs_sys = abs_sys
if not self.abs_sys is None:
self.z = self.abs_sys.zabs
else:
if z is None:
raise ValueError('XVelPlt: Need to set abs_sys or z!')
self.z = z
self.vmnx = vmnx
self.outfil = outfil
self.norm = norm
self.sel_wv = sel_wv
# Grab the pieces and tie together
self.vplt_widg = xspw.VelPlotWidget(ispec, abs_sys=self.abs_sys, llist=llist,
vmnx=self.vmnx, z=self.z, norm=self.norm)
self.pltline_widg = xspw.PlotLinesWidget(init_llist=self.vplt_widg.llist,
init_z=self.z)
#self.pltline_widg.spec_widg = self.vplt_widg
self.slines = xspw.SelectedLinesWidget(self.vplt_widg.llist[self.vplt_widg.llist['List']],
init_select=self.vplt_widg.llist['show_line'],
plot_widget=self.vplt_widg)
# Connections
self.pltline_widg.llist_widget.currentItemChanged.connect(self.on_llist_change)
self.connect(self.pltline_widg.zbox, QtCore.SIGNAL('editingFinished ()'), self.setz)
self.vplt_widg.canvas.mpl_connect('key_press_event', self.on_key)
# Outfil
wbtn = QtGui.QPushButton('Write', self)
wbtn.setAutoDefault(False)
wbtn.clicked.connect(self.write_out)
self.out_box = QtGui.QLineEdit()
self.out_box.setText(self.outfil)
self.connect(self.out_box, QtCore.SIGNAL('editingFinished ()'), self.set_outfil)
# Quit
buttons = QtGui.QWidget()
wqbtn = QtGui.QPushButton('Write+Quit', self)
wqbtn.setAutoDefault(False)
wqbtn.clicked.connect(self.write_quit)
qbtn = QtGui.QPushButton('Quit', self)
qbtn.setAutoDefault(False)
qbtn.clicked.connect(self.quit)
# Sizes
lines_widg = QtGui.QWidget()
lines_widg.setMaximumWidth(300)
lines_widg.setMinimumWidth(200)
# Layout
vbox = QtGui.QVBoxLayout()
vbox.addWidget(self.pltline_widg)
vbox.addWidget(self.slines)
vbox.addWidget(wbtn)
vbox.addWidget(self.out_box)
# Quit buttons
hbox1 = QtGui.QHBoxLayout()
hbox1.addWidget(wqbtn)
hbox1.addWidget(qbtn)
buttons.setLayout(hbox1)
#
vbox.addWidget(buttons)
lines_widg.setLayout(vbox)
hbox = QtGui.QHBoxLayout()
hbox.addWidget(self.vplt_widg)
hbox.addWidget(lines_widg)
self.setLayout(hbox)
# Initial draw
self.vplt_widg.on_draw()