assert os.path.isfile(params.new_metrology)
ext = os.path.splitext(params.new_metrology)[1].lower()
if ext in ['.def', '.cbf']:
metro_style = "cbf"
from xfel.cftbx.detector.cspad_cbf_tbx import cbf_file_to_basis_dict
metro = cbf_file_to_basis_dict(params.new_metrology)
else:
metro_style = "flatfile"
from xfel.cftbx.detector.cspad_cbf_tbx import read_optical_metrology_from_flat_file, asic_dimension, asic_gap
metro = read_optical_metrology_from_flat_file(params.new_metrology,
params.detector,
img['PIXEL_SIZE'],
asic_dimension,
asic_gap,
plot=params.plot)
for filename in params.pickle_file:
# Read the pickle file and pull the tiles out of it
img = easy_pickle.load(filename)
tiles = {}
asics = {}
data = img['DATA']
if os.path.isdir(params.old_metrology):
num_sections = len(sections)
for p in range(num_sections):
metro = metro.fetch(sources=[iotbx.phil.parse(arg)])
else:
assert os.path.isfile(params.new_metrology)
ext = os.path.splitext(params.new_metrology)[1].lower()
if ext in ['.def','.cbf']:
metro_style = "cbf"
from xfel.cftbx.detector.cspad_cbf_tbx import cbf_file_to_basis_dict
metro = cbf_file_to_basis_dict(params.new_metrology)
else:
metro_style = "flatfile"
from xfel.cftbx.detector.cspad_cbf_tbx import read_optical_metrology_from_flat_file, asic_dimension, asic_gap
metro = read_optical_metrology_from_flat_file(params.new_metrology, params.detector, img['PIXEL_SIZE'],
asic_dimension, asic_gap, plot=params.plot)
for filename in params.pickle_file:
# Read the pickle file and pull the tiles out of it
img = easy_pickle.load(filename)
tiles = {}
asics = {}
data = img['DATA']
if os.path.isdir(params.old_metrology):
num_sections = len(sections)
for p in xrange(num_sections):
for s in xrange(len(sections[p])):
if (params.metrology_file is None):
master_phil.show()
raise Usage(
"metrology_file must be defined (either metrology_file=XXX, or the file path alone)."
)
assert params.detector is not None
assert params.plot is not None
assert params.out is not None
print(params.metrology_file, params.detector)
from xfel.cftbx.detector.cspad_cbf_tbx import pixel_size
metro = read_optical_metrology_from_flat_file(
params.metrology_file,
params.detector,
pixel_size,
asic_dimension,
asic_gap,
plot=params.plot,
old_style_diff_path=params.old_style_diff_path)
write_cspad_cbf(None,
metro,
'cbf',
None,
params.out,
None,
0,
header_only=True)
if (__name__ == "__main__") :
user_phil = []
for arg in sys.argv[1:]:
if (os.path.isfile(arg)) :
user_phil.append(libtbx.phil.parse("""metrology_file=\"%s\"""" % arg))
else :
try :
user_phil.append(libtbx.phil.parse(arg))
except RuntimeError, e :
raise Sorry("Unrecognized argument '%s' (error: %s)" % (arg, str(e)))
params = master_phil.fetch(sources=user_phil).extract()
if (params.metrology_file is None) :
master_phil.show()
raise Usage("metrology_file must be defined (either metrology_file=XXX, or the file path alone).")
assert params.detector is not None
assert params.plot is not None
assert params.out is not None
print params.metrology_file, params.detector
from xfel.cftbx.detector.cspad_cbf_tbx import pixel_size
metro = read_optical_metrology_from_flat_file(params.metrology_file, params.detector,
pixel_size,asic_dimension,asic_gap,
plot=params.plot,old_style_diff_path=params.old_style_diff_path)
write_cspad_cbf(None, metro, 'cbf', None, params.out, None, 0, header_only=True)
