def run():
assert os.path.exists('xia2.json')
from xia2.Schema.XProject import XProject
xinfo = XProject.from_json(filename='xia2.json')
Chatter.write(xinfo.get_output())
write_citations()
PhilIndex.params.xia2.settings.scale.directory = scale_dir
working_directory = Environment.generate_directory(
[crystal.get_name(), scale_dir])
#os.chdir(working_directory)
crystals[crystal_id]._scaler = None # reset scaler
scaler = crystal._get_scaler()
Chatter.write(xinfo.get_output())
crystal.serialize()
duration = time.time() - start_time
# write out the time taken in a human readable way
Chatter.write('Processing took %s' % \
time.strftime("%Hh %Mm %Ss", time.gmtime(duration)))
# delete all of the temporary mtz files...
cleanup()
write_citations()
xinfo.as_json(filename='xia2.json')
Environment.cleanup()
return
if __name__ == '__main__':
run()