def update(self):
'''Check to see if any more frames have appeared - if they
have update myself and reset.'''
images = find_matching_images(self._template,
self._directory)
if len(images) > len(self._images):
self._images = images
from xia2.Schema import load_imagesets
imagesets = load_imagesets(
self._template, self._directory, id_image=self._id_image,
use_cache=False, reversephi=Flags.get_reversephi())
max_images = 0
best_sweep = None
for imageset in imagesets:
scan = imageset.get_scan()
if scan is None: continue
if imageset.get_scan().get_num_images() > max_images:
best_sweep = imageset
self._imageset = best_sweep
return
def _setup_from_image(self, image):
"""Configure myself from an image name."""
template, directory = image2template_directory(image)
self._fp_matching_images = find_matching_images(template, directory)
# trim this down to only allowed images...
if self._fp_wedge:
start, end = self._fp_wedge
images = []
for j in self._fp_matching_images:
if j < start or j > end:
continue
images.append(j)
self._fp_matching_images = images
from xia2.Schema import load_imagesets
imagesets = load_imagesets(
template,
directory,
image_range=(self._fp_matching_images[0],
self._fp_matching_images[-1]),
)
assert len(imagesets) == 1, "multiple imagesets match %s" % template
imageset = imagesets[0]
self._setup_from_imageset(imageset)
def update(self):
'''Check to see if any more frames have appeared - if they
have update myself and reset.'''
from xia2.Applications.xia2setup import is_hd5f_name
if is_hd5f_name(os.path.join(self._directory, self._template)):
return
images = find_matching_images(self._template, self._directory)
if len(images) > len(self._images):
self._images = images
from xia2.Schema import load_imagesets
imagesets = load_imagesets(
self._template,
self._directory,
id_image=self._id_image,
use_cache=False,
reversephi=PhilIndex.params.xia2.settings.input.reverse_phi)
max_images = 0
best_sweep = None
for imageset in imagesets:
scan = imageset.get_scan()
if scan is None: continue
if imageset.get_scan().get_num_images() > max_images:
best_sweep = imageset
self._imageset = best_sweep
return
def update(self):
'''Check to see if any more frames have appeared - if they
have update myself and reset.'''
from xia2.Applications.xia2setup import is_hd5f_name
if is_hd5f_name(os.path.join(self._directory, self._template)):
return
images = find_matching_images(self._template,
self._directory)
if len(images) > len(self._images):
self._images = images
from xia2.Schema import load_imagesets
imagesets = load_imagesets(
self._template, self._directory, id_image=self._id_image,
use_cache=False,
reversephi=PhilIndex.params.xia2.settings.input.reverse_phi)
max_images = 0
best_sweep = None
for imageset in imagesets:
scan = imageset.get_scan()
if scan is None: continue
if imageset.get_scan().get_num_images() > max_images:
best_sweep = imageset
self._imageset = best_sweep
return
def _setup_from_image(self, image):
'''Configure myself from an image name.'''
template, directory = image2template_directory(image)
self._fp_matching_images = find_matching_images(template, directory)
# trim this down to only allowed images...
if self._fp_wedge:
start, end = self._fp_wedge
images = []
for j in self._fp_matching_images:
if j < start or j > end:
continue
images.append(j)
self._fp_matching_images = images
from xia2.Schema import load_imagesets
imagesets = load_imagesets(
template, directory,
image_range=(self._fp_matching_images[0], self._fp_matching_images[-1]))
assert len(imagesets) == 1, 'multiple imagesets match %s' % template
imageset = imagesets[0]
self._setup_from_imageset(imageset)
return
'thau_lores_1_###.mccd': 1000,
'27032_1_E1_###.mccd': 0,
'27032_1_E2_###.mccd': 100,
'27032_2_###.mccd': 200
}
batches = {}
from xia2.Experts.FindImages import find_matching_images, \
template_directory_number2image, image2template_directory
image_names = []
for image in sys.argv[1:]:
template, directory = image2template_directory(image)
images = find_matching_images(template, directory)
batch_images = []
for i in images:
image = template_directory_number2image(template, directory, i)
image_names.append(image)
batch_images.append(image)
epochs = epocher(batch_images)
for j in range(len(epochs)):
batch = images[j] + offsets[template]
batches[epochs[j][1]] = batch
dose = accumulate(image_names)
epochs = sorted(dose.keys())
}
batches = { }
from xia2.Experts.FindImages import find_matching_images, \
template_directory_number2image, image2template_directory
from xia2.Handlers.Flags import Flags
# just cos we can...
Flags.set_trust_timestamps(True)
image_names = []
for image in sys.argv[1:]:
template, directory = image2template_directory(image)
images = find_matching_images(template, directory)
batch_images = []
for i in images:
image = template_directory_number2image(
template, directory, i)
image_names.append(image)
batch_images.append(image)
epochs = epocher(batch_images)
for j in range(len(epochs)):
batch = images[j] + offsets[template]
batches[epochs[j][1]] = batch
dose = accumulate(image_names)