def _get_files_as_regularsurfaces_multiprocess(option=1):
surfs = []
with concurrent.futures.ProcessPoolExecutor(
max_workers=NTHREAD) as executor:
if option == 1:
futures = {
executor.submit(_get_regsurff, i): i
for i in range(NTHREAD)
}
else:
futures = {
executor.submit(_get_regsurfi, i): i
for i in range(NTHREAD)
}
for future in concurrent.futures.as_completed(futures):
try:
surf = future.result()
except Exception as exc: # pylint: disable=broad-except
logger.error("Error: %s", exc)
else:
surfs.append(surf)
regular_surfaces = xtgeo.Surfaces(surfs)
return regular_surfaces
def test_create_init_filelist():
"""Create simple Surfaces instance, initiate with a list of files."""
flist = [TESTSET1A, TESTSET1B]
surfs = xtgeo.Surfaces(flist)
assert isinstance(surfs.surfaces[0], xtgeo.RegularSurface)
assert isinstance(surfs, xtgeo.Surfaces)
def test_more_statistics():
"""Find the mean etc measures of the surfaces"""
base = xtgeo.RegularSurface(TESTSET1A)
base.values *= 0.0
bmean = base.values.mean()
surfs = []
surfs.append(base)
# this will get 101 constant maps ranging from 0 til 100
for inum in range(1, 101):
tmp = base.copy()
tmp.values += float(inum)
surfs.append(tmp)
so = xtgeo.Surfaces(surfs)
res = so.statistics()
# theoretical stdev:
sum2 = 0.0
for inum in range(0, 101):
sum2 += (float(inum) - 50.0)**2
stdev = math.sqrt(sum2 / 100.0) # total 101 samples, use N-1
tsetup.assert_almostequal(res["mean"].values.mean(), bmean + 50.0, 0.0001)
tsetup.assert_almostequal(res["std"].values.mean(), stdev, 0.0001)
def test_create_init_objectlist():
"""Create simple Surfaces instance, initiate with a list of objects."""
top = xtgeo.RegularSurface(TESTSET1A)
base = xtgeo.RegularSurface(TESTSET1B)
surfs = xtgeo.Surfaces([top, base])
assert isinstance(surfs.surfaces[0], xtgeo.RegularSurface)
assert isinstance(surfs, xtgeo.Surfaces)
def test_create_init_mixlist():
"""Create simple Surfaces instance, initiate with a list of files"""
top = xtgeo.RegularSurface(TESTSET1A)
flist = [top, TESTSET1B]
surfs = xtgeo.Surfaces(flist)
assert isinstance(surfs.surfaces[0], xtgeo.RegularSurface)
assert isinstance(surfs, xtgeo.Surfaces)
def _create_statistical_surface(
self, address: StatisticalSurfaceAddress
) -> Optional[xtgeo.RegularSurface]:
surf_fns: List[str] = self._locate_simulated_surfaces(
attribute=address.attribute,
name=address.name,
datestr=address.datestr if address.datestr is not None else "",
realizations=address.realizations,
)
if len(surf_fns) == 0:
LOGGER.warning(f"No input surfaces found for statistical surface {address}")
return None
timer = PerfTimer()
surfaces = xtgeo.Surfaces(surf_fns)
et_load_s = timer.lap_s()
surf_count = len(surfaces.surfaces)
if surf_count == 0:
LOGGER.warning(
f"Could not load input surfaces for statistical surface {address}"
)
return None
# print("########################################################")
# first_surf = surfaces.surfaces[0]
# for surf in surfaces.surfaces:
# print(
# surf.dimensions,
# surf.xinc,
# surf.yinc,
# surf.xori,
# surf.yori,
# surf.rotation,
# surf.filesrc,
# )
# print("########################################################")
# Suppress numpy warnings when surfaces have undefined z-values
with warnings.catch_warnings():
warnings.filterwarnings("ignore", "All-NaN slice encountered")
warnings.filterwarnings("ignore", "Mean of empty slice")
warnings.filterwarnings("ignore", "Degrees of freedom <= 0 for slice")
stat_surface = _calc_statistic_across_surfaces(address.statistic, surfaces)
et_calc_s = timer.lap_s()
LOGGER.debug(
f"Created statistical surface in: {timer.elapsed_s():.2f}s ("
f"load={et_load_s:.2f}s, calc={et_calc_s:.2f}s), "
f"[#surfaces={surf_count}, stat={address.statistic}, "
f"attr={address.attribute}, name={address.name}, date={address.datestr}]"
)
return stat_surface
def test_statistics():
"""Find the mean etc measures of the surfaces."""
flist = [TESTSET1A, TESTSET1B]
surfs = xtgeo.Surfaces(flist)
res = surfs.statistics()
res["mean"].to_file(join(TMPD, "surf_mean.gri"))
res["std"].to_file(join(TMPD, "surf_std.gri"))
assert_almostequal(res["mean"].values.mean(), 1720.5029, 0.0001)
assert_almostequal(res["std"].values.min(), 3.7039, 0.0001)
def test_create():
"""Create simple Surfaces instance."""
logger.info("Simple case...")
top = xtgeo.RegularSurface(TESTSET1A)
base = xtgeo.RegularSurface(TESTSET1B)
surfs = xtgeo.Surfaces()
surfs.surfaces = [top, base]
surfs.describe()
assert isinstance(surfs.surfaces[0], xtgeo.RegularSurface)
assert isinstance(surfs, xtgeo.Surfaces)
def test_get_surfaces_from_3dgrid():
"""Create surfaces from a 3D grid."""
mygrid = xtgeo.Grid(TESTSETG1)
surfs = xtgeo.Surfaces()
surfs.from_grid3d(mygrid, rfactor=2)
surfs.describe()
assert_almostequal(surfs.surfaces[-1].values.mean(), 1742.28, 0.04)
assert_almostequal(surfs.surfaces[-1].values.min(), 1589.58, 0.04)
assert_almostequal(surfs.surfaces[-1].values.max(), 1977.29, 0.04)
assert_almostequal(surfs.surfaces[0].values.mean(), 1697.02, 0.04)
for srf in surfs.surfaces:
srf.to_file(join(TMPD, srf.name + ".gri"))
def save_surface(fns, statistic) -> io.BytesIO:
surfaces = xtgeo.Surfaces(fns)
if len(surfaces.surfaces) == 0:
surface = xtgeo.RegularSurface()
elif statistic in ["Mean", "StdDev", "Min", "Max", "P10", "P90"]:
# Suppress numpy warnings when surfaces have undefined z-values
with warnings.catch_warnings():
warnings.filterwarnings("ignore", "All-NaN slice encountered")
warnings.filterwarnings("ignore", "Mean of empty slice")
warnings.filterwarnings("ignore", "Degrees of freedom <= 0 for slice")
surface = calculate_statistic(surfaces, statistic)
else:
surface = xtgeo.RegularSurface()
return io.BytesIO(surface_to_json(surface).encode())
def test_more_statistics():
"""Find the mean etc measures of the surfaces."""
base = xtgeo.RegularSurface(TESTSET1A)
base.values *= 0.0
bmean = base.values.mean()
surfs = []
surfs.append(base)
# this will get 101 constant maps ranging from 0 til 100
for inum in range(1, 101):
tmp = base.copy()
tmp.values += float(inum)
surfs.append(tmp)
so = xtgeo.Surfaces(surfs)
res = so.statistics()
# theoretical stdev:
sum2 = 0.0
for inum in range(0, 101):
sum2 += (float(inum) - 50.0) ** 2
stdev = math.sqrt(sum2 / 100.0) # total 101 samples, use N-1
assert_almostequal(res["mean"].values.mean(), bmean + 50.0, 0.0001)
assert_almostequal(res["std"].values.mean(), stdev, 0.0001)
small = xtgeo.RegularSurface()
so2 = xtgeo.Surfaces()
for inum in range(10):
tmp = small.copy()
tmp.values += 8.76543
so2.append([tmp])
res2 = so2.statistics(percentiles=[10, 50])
assert res2["p10"].values.mean() == pytest.approx(16.408287142, 0.001)
def test_regsurf_aggregated_diffdata(fmurun_w_casemetadata, rmsglobalconfig, regsurf):
"""Test surfaces, where input is diffdata."""
logger.info("Active folder is %s", fmurun_w_casemetadata)
os.chdir(fmurun_w_casemetadata)
edata = dataio.ExportData(
config=rmsglobalconfig, # read from global config
)
aggs = []
# create "forward" files
for i in range(10):
use_regsurf = regsurf.copy()
use_regsurf.values += float(i)
expfile = edata.export(
use_regsurf,
name="mymap_" + str(i),
realization=i,
timedata=[[20300201], [19990204]],
)
aggs.append(expfile)
# next task is to do an aggradation, and now the metadata already exists
# per input element which shall be re-used
surfs = xtgeo.Surfaces()
metas = []
for mapfile in aggs:
surf = xtgeo.surface_from_file(mapfile)
meta = dataio.read_metadata(mapfile)
metas.append(meta)
surfs.append([surf])
aggregated = surfs.statistics()
logger.info("Aggr. mean is %s", aggregated["mean"].values.mean()) # shall be 1238.5
aggdata = dataio.AggregatedData(
configs=metas,
operation="mean",
name="myaggrd",
verbosity="INFO",
aggregation_id="789politipoliti",
)
newmeta = aggdata.generate_aggregation_metadata(aggregated["mean"])
logger.info("New metadata:\n%s", utils.prettyprint_dict(newmeta))
def test_surfaces_apply():
base = xtgeo.RegularSurface(TESTSET1A)
base.describe()
base.values *= 0.0
bmean = base.values.mean()
surfs = [base]
for inum in range(1, 101):
tmp = base.copy()
tmp.values += float(inum)
surfs.append(tmp)
so = xtgeo.Surfaces(surfs)
res = so.apply(np.nanmean)
tsetup.assert_almostequal(res.values.mean(), bmean + 50.0, 0.0001)
res = so.apply(np.nanpercentile, 10, axis=0, interpolation="nearest")
tsetup.assert_almostequal(res.values.mean(), bmean + 10.0, 0.0001)
def save_statistical_surface(fns: List[str], calculation: str) -> io.BytesIO:
"""Wrapper function to store a calculated surface as BytesIO"""
surfaces = xtgeo.Surfaces(fns)
if len(surfaces.surfaces) == 0:
surface = xtgeo.RegularSurface(ncol=1, nrow=1, xinc=1,
yinc=1) # 1's as input is required
elif calculation in ["Mean", "StdDev", "Min", "Max", "P10", "P90"]:
# Suppress numpy warnings when surfaces have undefined z-values
with warnings.catch_warnings():
warnings.filterwarnings("ignore", "All-NaN slice encountered")
warnings.filterwarnings("ignore", "Mean of empty slice")
warnings.filterwarnings("ignore",
"Degrees of freedom <= 0 for slice")
surface = get_statistical_surface(surfaces, calculation)
else:
surface = xtgeo.RegularSurface(ncol=1, nrow=1, xinc=1,
yinc=1) # 1's as input is required
return io.BytesIO(surface_to_json(surface).encode())
def save_surface(fns, statistic) -> io.BytesIO:
surfaces = xtgeo.Surfaces(fns)
if len(surfaces.surfaces) == 0:
surface = xtgeo.RegularSurface()
elif statistic == "Mean":
surface = surfaces.apply(np.nanmean, axis=0)
elif statistic == "StdDev":
surface = surfaces.apply(np.nanstd, axis=0)
elif statistic == "Min":
surface = surfaces.apply(np.nanmin, axis=0)
elif statistic == "Max":
surface = surfaces.apply(np.nanmax, axis=0)
elif statistic == "P10":
surface = surfaces.apply(np.nanpercentile, 10, axis=0)
elif statistic == "P90":
surface = surfaces.apply(np.nanpercentile, 90, axis=0)
else:
surface = xtgeo.RegularSurface()
return io.BytesIO(surface_to_json(surface).encode())
def save_statistical_surface_no_store(fns: List[str],
calculation: Optional[str] = "Mean"
) -> io.BytesIO:
"""Wrapper function to store a calculated surface as BytesIO"""
surfaces = xtgeo.Surfaces([get_stored_surface_path(fn) for fn in fns])
if len(surfaces.surfaces) == 0:
surface = xtgeo.RegularSurface(ncol=1, nrow=1, xinc=1,
yinc=1) # 1's as input is required
elif calculation in ["Mean", "StdDev", "Min", "Max", "P10", "P90"]:
# Suppress numpy warnings when surfaces have undefined z-values
with warnings.catch_warnings():
warnings.filterwarnings("ignore", "All-NaN slice encountered")
warnings.filterwarnings("ignore", "Mean of empty slice")
warnings.filterwarnings("ignore",
"Degrees of freedom <= 0 for slice")
surface = get_statistical_surface(surfaces, calculation)
else:
surface = xtgeo.RegularSurface(ncol=1, nrow=1, xinc=1,
yinc=1) # 1's as input is required
stream = io.BytesIO()
surface.to_file(stream, fformat="irap_binary")
return stream
def get_surfaces(fns: List[str]) -> xtgeo.Surfaces:
return xtgeo.Surfaces(fns)
def test_regsurf_aggregated(fmurun_w_casemetadata, rmsglobalconfig, regsurf):
"""Test generating aggragated metadata for a surface, where input has metadata."""
logger.info("Active folder is %s", fmurun_w_casemetadata)
os.chdir(fmurun_w_casemetadata)
edata = dataio.ExportData(
config=rmsglobalconfig, # read from global config
verbosity="INFO",
)
aggs = []
# create "forward" files
for i in range(1): # TODO! 10
use_regsurf = regsurf.copy()
use_regsurf.values += float(i)
expfile = edata.export(use_regsurf, name="mymap_" + str(i), realization=i)
aggs.append(expfile)
# next task is to do an aggradation, and now the metadata already exists
# per input element which shall be re-used
surfs = xtgeo.Surfaces()
metas = []
for mapfile in aggs:
surf = xtgeo.surface_from_file(mapfile)
meta = dataio.read_metadata(mapfile)
print(utils.prettyprint_dict(meta))
metas.append(meta)
surfs.append([surf])
aggregated = surfs.statistics()
logger.info("Aggr. mean is %s", aggregated["mean"].values.mean()) # shall be 1238.5
aggdata = dataio.AggregatedData(
configs=metas,
operation="mean",
name="myaggrd",
verbosity="INFO",
aggregation_id="1234",
)
newmeta = aggdata.generate_aggregation_metadata(aggregated["mean"])
logger.debug("New metadata:\n%s", utils.prettyprint_dict(newmeta))
assert newmeta["fmu"]["aggregation"]["id"] == "1234"
# let aggregation input True generate hash
aggdata = dataio.AggregatedData(
configs=metas,
operation="mean",
name="myaggrd2",
verbosity="INFO",
aggregation_id=True,
)
newmeta = aggdata.generate_aggregation_metadata(aggregated["mean"])
logger.debug("New metadata:\n%s", utils.prettyprint_dict(newmeta))
assert newmeta["fmu"]["aggregation"]["id"] != "1234"
assert newmeta["fmu"]["aggregation"]["id"] is not True
# let aggregation input None generate a missing key
aggdata = dataio.AggregatedData(
configs=metas,
operation="mean",
name="myaggrd2",
verbosity="INFO",
aggregation_id=None,
)
newmeta = aggdata.generate_aggregation_metadata(aggregated["mean"])
logger.debug("New metadata:\n%s", utils.prettyprint_dict(newmeta))
assert "id" not in newmeta["fmu"]["aggregation"]