Exemple #1
0
	def _check_sequence_accuracy(self, wild_type_residue, position, dna_sequence, start_site):
		print "position is:", position
		start = ((int(position) * 3) + int(start_site)) - 3
		stop = start + 3
		residue = BioModules.dna2protein(dna_sequence[start:stop])
		print "residue is: ", residue
		print "what i think the residue is: ", wild_type_residue
Exemple #2
0
	def get_protein_sequence(self):
		for i in range(len(self.dna_sequences)):
			for sequence in self.dna_sequences[i]:
				self.protein_sequences.append(BioModules.dna2protein(sequence[1][100:-100]))
			seq_list = []
			for gene, sequence in zip(self.genes, self.protein_sequences):
				seq_list.append((gene, sequence))
			self._write_fasta(seq_list)