def makeClassAverages(lst, outputstack, classdata, params): #align images in class images = EMAN.readImages(lst, -1, -1, 0) for image in images: image.rotateAndTranslate() if image.isFlipped(): image.hFlip() #make class average avg = EMAN.EMData() avg.makeMedian(images) #write class average e = EMAN.Euler() alt = classdata['euler1'] * math.pi / 180 az = classdata['euler2'] * math.pi / 180 phi = 0.0 e.setAngle(alt, az, phi) avg.setRAlign(e) avg.setNImg(len(images)) avg.applyMask(params['mask'], 0) avg.writeImage(outputstack, -1)