def test_mq2_read_input_file(self):
""" Test MQ² read_input_file function """
matrix = MQ2.read_input_file(os.path.join(TEST_FOLDER, 'mapqtl',
'qtls.exp'),
sep=',')
self.assertEqual(len(matrix), 5)
self.assertEqual(len(matrix[0]), 14)
def test_MQ2_write_matrix(self):
""" Test MQ² write_matrix function """
data = [[1, 2, 3], [1, 2, 3, 4], 'test']
datafile = os.path.join(TEST_FOLDER, 'test_matrix.csv')
self.assertFalse(os.path.exists(datafile))
MQ2.write_matrix(datafile, data)
self.assertTrue(os.path.exists(datafile))
matrix = MQ2.read_input_file(datafile, sep=',')
self.assertEqual(len(matrix), 3)
self.assertEqual(len(matrix[0]), 3)
self.assertEqual(len(matrix[1]), 4)
self.assertEqual(len(matrix[2]), 1)
os.unlink(datafile)
self.assertFalse(os.path.exists(datafile))
def test_MQ2_write_matrix(self):
""" Test MQ² write_matrix function """
data = [[1,2,3], [1,2,3,4], 'test']
datafile = os.path.join(TEST_FOLDER, 'test_matrix.csv')
self.assertFalse(os.path.exists(datafile))
MQ2.write_matrix(datafile, data)
self.assertTrue(os.path.exists(datafile))
matrix = MQ2.read_input_file(datafile, sep=',')
self.assertEqual(len(matrix), 3)
self.assertEqual(len(matrix[0]), 3)
self.assertEqual(len(matrix[1]), 4)
self.assertEqual(len(matrix[2]), 1)
os.unlink(datafile)
self.assertFalse(os.path.exists(datafile))
def test_mq2_read_input_file(self):
""" Test MQ² read_input_file function """
matrix = MQ2.read_input_file(
os.path.join(TEST_FOLDER, 'mapqtl', 'qtls.exp'), sep=',')
self.assertEqual(len(matrix), 5)
self.assertEqual(len(matrix[0]), 14)
