args = vars(argParser.parse_args())
if args['version']:
print("{}".format(version[1:]))
sys.exit(0)
# Checking if multiple fragmentation specifications where given
if args['fragSize'] != (-1) and (args['fragments'] != "" or args['detailedFrag']):
msg = "Please do not specify fragments manually when using the --fragSize option."
printError(msg)
if args['fragments'] and args['detailedFrag']:
msg = "Please only use one of --fragments or --detailedFrag, not both"
printError(msg)
o.calcHydr = path.abspath(args['exe'])
o.REMOPath = path.abspath(args['REMOdir'])
o.runDir = os.getcwd()
# Generate temprary directory
if args['inData'] == "":
checkPathExists(args['tmpDir'])
o.tmpPath = tempfile.mkdtemp(dir=path.abspath(args['tmpDir']), prefix="HYCUD_")
else:
o.tmpPath = cwd
if not path.isdir(o.tmpPath):
msg = "{} is not a valid directory".format(o.tmpPath)
printError(msg)
if args['fragments'] == "" and args['detailedFrag'] == "" and args['fragSize'] == (-1):
fragSize = default_fragmentSize
