def _createNetwork(self,verbose):
"""
Creates BioNetGen network 'filename.net'.
Returns list of names of network parameters.
"""
filename,n,rulesList = self.filename,self.n,self.rulesList
if self.verbose:
mult = 2
if self.MichaelisMenten:
mult = 4
start,startWall = cpuTime(),wallTime()
print ""
print "Creating network with "+str(n)+" activation sites"
print " and "+str(len(rulesList))+" additional rules (" \
+str(mult*(n+len(rulesList)))+" parameters)."
namesList = writeBNGL.writeBNGLnetwork(n,rulesList,filename, \
MichaelisMenten=self.MichaelisMenten)
self._runBNGLfile(filename)
if self.verbose:
print "Network creation took "+bothTimeStr(start,startWall)
return namesList
def _createNetwork(self, verbose):
"""
Creates BioNetGen network 'filename.net'.
Returns list of names of network parameters.
"""
filename, n, rulesList = self.filename, self.n, self.rulesList
if self.verbose:
mult = 2
if self.MichaelisMenten:
mult = 4
start, startWall = cpuTime(), wallTime()
print ""
print "Creating network with " + str(n) + " activation sites"
print " and "+str(len(rulesList))+" additional rules (" \
+str(mult*(n+len(rulesList)))+" parameters)."
namesList = writeBNGL.writeBNGLnetwork(n,rulesList,filename, \
MichaelisMenten=self.MichaelisMenten)
self._runBNGLfile(filename)
if self.verbose:
print "Network creation took " + bothTimeStr(start, startWall)
return namesList
