Exemple #1
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def exportMotifControlSequences( infile, outfile ):
    '''for each interval, export the left and right 
    sequence segment of the same size.
    '''
    PipelineMotifs.exportSequencesFromBedFile( infile, outfile,
                                               masker = PARAMS['motifs_masker'],
                                               mode = "leftright" )
Exemple #2
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def exportMotifDetectionSequences( infile, outfile ):
    '''export sequences for motif discovery.

    This method requires the _interval tables.
    '''
    PipelineMotifs.exportSequencesFromBedFile( infile, outfile,
                                               masker = PARAMS['motifs_masker'])