def AddProductionRule(self, edit=None):
rule = dp.AddProductionRuleDialog(self, edit).result
if rule:
if edit:
Rule.removeProd(edit[0])
Rule.AddProduction(rule)
self.RefreshLists()
def AddDrawingRule(self, edit=None):
rule = dd.AddDrawingRuleDialog(self, edit).result
if rule:
if edit:
Rule.removeDraw(edit[0])
Rule.AddDrawing(rule)
self.RefreshLists()
def parseSaveFile(self, s):
Rule.wipe()
settings = s.split('@')
self.inp_seed.set(str(settings[1]))
self.parseProdRules(settings[2])
self.parseDrawRules(settings[3])
self.RefreshLists()
def RefreshLists(self):
self.list_prod.delete(0, END)
self.list_draw.delete(0, END)
l = self.formatRules(Rule.getProductions())
for p in l:
self.list_prod.insert(END, p)
l = self.formatRules(Rule.getDrawings())
for d in l:
self.list_draw.insert(END, d)
def __formatTemplate(self):
i = Position(0, 0) # 扫描时行数
eIndex = bIndex = -1 # 临时变量 记录rule在y坐标 起始位置和截止位置
length = len(self.lines) # 行数
startPosition = endPosition = None # 临时变量 记录rule起始位置和截止位置
dpStartPos = dpEndPos = None # 临时变量 记录rule对应模版截取的 起始位置和截止位置
targetName = None # 临时变量 记录rule的targetName
dataString = None # 临时变量 记录rule的dataString
tmpIndex = None # y坐标的临时变量
lines = None # 临时变量 记录复制的rule的lines(从dpStartPos和dpEndPos复制出来的内容)
while i.row < length:
bIndex = self.lines[i.row].find("[", i.column)
if bIndex == -1:
i.row += 1
i.column = 0
continue
eIndex = self.lines[i.row].find("]", bIndex + 1)
# 获得targetName
targetName = self.lines[i.row][bIndex + 1 : eIndex]
# 获得rule 起始位置
startPosition = Position(i.row, bIndex)
tmpIndex = self.lines[i.row].find("]", eIndex + 1)
# 获得dataString
dataString = self.lines[i.row][(eIndex + 1) : tmpIndex]
# 截取内容的起始位置
dpStartPos = Position(i.row, tmpIndex + 1)
tmpIndex = self.lines[i.row].find(Rule.getRules()[targetName].endName, tmpIndex + 1)
while tmpIndex == -1 and i.row < length:
i.row += 1
tmpIndex = self.lines[i.row].find(Rule.getRules()[targetName].endName)
if tmpIndex == -1:
raise Exception()
# 获得rule截止位置
endPosition = Position(i.row, tmpIndex + len(Rule.getRules()[targetName].endName) - 1)
i.column = tmpIndex + 1
# 截取内容的截止位置
if tmpIndex:
dpEndPos = Position(i.row, tmpIndex - 1)
else:
dpEndPos = Position(i.row - 1, len(self.lines[i.row - 1]))
# 截取模版内容
lines = self.__duplicatePart(dpStartPos, dpEndPos)
# 创建rule
self.rules.append(Rule.getRules()[targetName](startPosition, endPosition, dataString, lines))
def replace(s): prod = Rule.getProductions() idx = 0 a = list(s) for c in a: for p in prod: if c == p[0]: a[idx] = p[1] break idx += 1 return "".join(a)
def getDrawCount(self, s):
draw_commands = []
for r in Rule.getDrawings():
if r[1].lower() == "draw":
draw_commands.append(r[0])
draw_count = 0;
for c in s:
for d in draw_commands:
if c == d:
draw_count += 1
break
return draw_count
def drawAll(self, newWindow= True):
if self.generated == True:
self.butt_print.config(state= 'disabled')
self.timebuff = 0.0
self.color = Color.white()
self.thick = 2
l = float(self.slid_linesize.get())
a = float(self.slid_angle.get())
Draw.init(self.startingPoint, l, a)
if self.fullScreen.get() == 1:
if newWindow:
self.curr_canvas = dc.BigCanvas(self).canvas
self.canvas.delete("all")
else:
self.curr_canvas = self.canvas
self.curr_canvas.delete("all")
self.curr_canvas.config(bg= Color.getHexString(self.bgColor.get()))
rainbow = self.rainbowCheck.get() == 1
if rainbow or self.incThickYN:
self.incStep = 1.0/float(self.getDrawCount(self.output))
self.percent = 0.0
for c in self.output:
if c == '[':
Draw.push()
elif c == ']':
Draw.pop()
else:
for r in Rule.getDrawings():
if c == r[0]:
if len(r) > 2:
params = (r[1], r[2])
else:
params = (r[1],)
s = float(self.slid_timer.get())
self.do(params, s, rainbow)
break
self.butt_print.config(state= 'normal')
def add_rule(self, cond, conc):
self.rules.append(Rule(cond, conc))
import Data, InitPeolple, DrawFirst, Rule, Income
import matplotlib.pyplot as plt
import matplotlib.animation
import numpy as np
import time
init = InitPeolple.InitPeople()
draw = DrawFirst.draw()
move = Rule.PeopleMove()
income = Income.outDirection()
# allPeople=init.creatPeople()
allPeople = init.creatAppointPeo()
allWall = init.creatWall()
allExit = init.creatExit()
# while Data.flag:
for p in allPeople:
income.outDirection(p, allPeople)
direction = max(p.allInComeBySort.items(), key=lambda x: x[1])[0]
print('direction ==', direction)
# for p in allPeople:
# defineDirection.countDefine(p)
# isCrash.isNextNull(p, allPeople)
# print(p.nextNull)
# move.moveRight(p)
# # if not p.type:
# plt.figure(figsize=(10,6))
# while Data.flag:
# for p in allPeople:
# defineDirection.countDefine(p)
def packProdRules(self):
return self.packRules(Rule.getProductions())
def packDrawRules(self):
return self.packRules(Rule.getDrawings())
def DeleteProductionRule(self):
s = self.list_prod.curselection()
if s:
Rule.removeProd(s[0])
self.RefreshLists()
def DeleteDrawingRule(self):
s = self.list_draw.curselection()
if s:
Rule.removeDraw(s[0])
self.RefreshLists()
def __init__(self, source=""):
self.source = source
self.rules = []
self.rules += [Rule.Rule("#CRLF", "ENFORCED_CRLF")]
self.rules += [Rule.Rule("#version", "VERSION_DIRECTIVE")]
self.rules += [Rule.Rule("#define", "DEFINE_DIRECTIVE")]
self.rules += [Rule.Rule("/\*(.|\n)*\*/", "MULTILINE_COMMENT")]
self.rules += [Rule.Rule("//.*\n", "SINGLELINE_COMMENT")]
self.rules += [Rule.Rule("\n", "CRLF")]
self.rules += [Rule.Rule("\d+", "INTEGER_CONSTANT")]
self.rules += [
Rule.Rule("((-?\d+\.\d*)|(-?\d*\.\d+))([eE]([-\+]?)\d+)?",
"FLOAT_CONSTANT")
]
self.rules += [Rule.Rule("\.([xyzw]+|[rgba]+)", "SWIZZLE")]
self.rules += [Rule.Rule("if", "IF")]
self.rules += [Rule.Rule("else", "ELSE")]
self.rules += [Rule.Rule("for", "FOR")]
self.rules += [Rule.Rule("uniform", "UNIFORM")]
self.rules += [Rule.Rule("const", "CONST")]
self.rules += [Rule.Rule("float", "FLOAT")]
self.rules += [Rule.Rule("int", "INT")]
self.rules += [Rule.Rule("vec2", "VEC2")]
self.rules += [Rule.Rule("vec3", "VEC3")]
self.rules += [Rule.Rule("vec4", "VEC4")]
self.rules += [Rule.Rule("mat2", "MAT2")]
self.rules += [Rule.Rule("mat3", "MAT3")]
self.rules += [Rule.Rule("mat4", "MAT4")]
self.rules += [Rule.Rule("break", "BREAK")]
self.rules += [Rule.Rule("sampler2D", "SAMPLER2D")]
self.rules += [Rule.Rule(";", "SEMICOLON")]
self.rules += [Rule.Rule(":", "COLON")]
self.rules += [Rule.Rule(",", "COMMA")]
self.rules += [Rule.Rule("\?", "QUESTIONMARK")]
self.rules += [Rule.Rule("\.", "DOT")]
self.rules += [Rule.Rule("=", "EQUAL")]
self.rules += [Rule.Rule("<=", "LESSEQUAL")]
self.rules += [Rule.Rule(">=", "GREATEREQUAL")]
self.rules += [Rule.Rule("==", "ISEQUAL")]
self.rules += [Rule.Rule("!=", "NOTEQUAL")]
self.rules += [Rule.Rule("<", "LESSTHAN")]
self.rules += [Rule.Rule(">", "GREATERTHAN")]
self.rules += [Rule.Rule("\+=", "PLUSEQUAL")]
self.rules += [Rule.Rule("\*=", "TIMESEQUAL")]
self.rules += [Rule.Rule("/=", "DIVEQUAL")]
self.rules += [Rule.Rule("-=", "MINUSEQUAL")]
self.rules += [Rule.Rule("\*", "TIMES")]
self.rules += [Rule.Rule("/", "DIVBY")]
self.rules += [Rule.Rule("\+", "PLUS")]
self.rules += [Rule.Rule("-", "MINUS")]
self.rules += [Rule.Rule("\(", "LPAREN")]
self.rules += [Rule.Rule("\)", "RPAREN")]
self.rules += [Rule.Rule("\[", "LBRACKET")]
self.rules += [Rule.Rule("\]", "RBRACKET")]
self.rules += [Rule.Rule("{", "LBRACE")]
self.rules += [Rule.Rule("}", "RBRACE")]
self.rules += [Rule.Rule("[|]{2}", "OR")]
self.rules += [Rule.Rule("[&]{2}", "AND")]
self.rules += [Rule.Rule("gl_FragColor", "GL_FRAGCOLOR")]
self.rules += [Rule.Rule("gl_FragCoord", "GL_FRAGCOORD")]
self.rules += [Rule.Rule("in", "IN_QUALIFIER")]
self.rules += [Rule.Rule("out", "OUT_QUALIFIER")]
self.rules += [Rule.Rule("inout", "INOUT_QUALIFIER")]
self.rules += [Rule.Rule("void", "VOID")]
self.rules += [Rule.Rule("texture", "TEXTURE")]
self.rules += [Rule.Rule("main", "MAIN")]
self.rules += [Rule.Rule("sin", "SIN")]
self.rules += [Rule.Rule("cos", "COS")]
self.rules += [Rule.Rule("tan", "TAN")]
self.rules += [Rule.Rule("asin", "ASIN")]
self.rules += [Rule.Rule("acos", "ACOS")]
self.rules += [Rule.Rule("atan", "ATAN")]
self.rules += [Rule.Rule("sinh", "SINH")]
self.rules += [Rule.Rule("cosh", "COSH")]
self.rules += [Rule.Rule("tanh", "TANH")]
self.rules += [Rule.Rule("asinh", "ASINH")]
self.rules += [Rule.Rule("acosh", "ACOSH")]
self.rules += [Rule.Rule("atanh", "ATANH")]
self.rules += [Rule.Rule("length", "LENGTH")]
self.rules += [Rule.Rule("reflect", "REFLECT")]
self.rules += [Rule.Rule("refract", "REFRACT")]
self.rules += [Rule.Rule("step", "STEP")]
self.rules += [Rule.Rule("smoothstep", "SMOOTHSTEP")]
self.rules += [Rule.Rule("clamp", "CLAMP")]
self.rules += [Rule.Rule("dot", "DOT")]
self.rules += [Rule.Rule("abs", "ABS")]
self.rules += [Rule.Rule("pow", "POW")]
self.rules += [Rule.Rule("mix", "MIX")]
self.rules += [Rule.Rule("floor", "FLOOR")]
self.rules += [Rule.Rule("fract", "FRACT")]
self.rules += [Rule.Rule("round", "ROUND")]
self.rules += [Rule.Rule("ceil", "CEIL")]
self.rules += [Rule.Rule("max", "MAX")]
self.rules += [Rule.Rule("min", "MIN")]
self.rules += [Rule.Rule("mod", "MOD")]
self.rules += [Rule.Rule("sign", "SIGN")]
self.rules += [Rule.Rule("exp", "EXP")]
self.rules += [Rule.Rule("normalize", "NORMALIZE")]
self.rules += [Rule.Rule("cross", "CROSS")]
self.rules += [Rule.Rule("sqrt", "SQRT")]
self.rules += [Rule.Rule("continue", "CONTINUE")]
self.rules += [Rule.Rule("return", "RETURN")]
self.rules += [Rule.Rule("smoothstep", "SMOOTHSTEP")]
self.rules += [Rule.Rule("all", "ALL")]
self.rules += [Rule.Rule("lessThan", "LESSTHAN")]
self.rules += [Rule.Rule("[a-zA-Z_]+[a-zA-Z0-9_]*", "IDENTIFIER")]
self.index = 0
self.line = 0
self.column = 0
pass
def __init__(self, source=""):
self.source = source
self.rules = []
self.rules += [Rule.Rule("#version", "VERSION_DIRECTIVE")]
self.rules += [Rule.Rule("#define", "DEFINE_DIRECTIVE")]
self.rules += [Rule.Rule("/\*(.|\n)*\*/", "MULTILINE_COMMENT")]
self.rules += [Rule.Rule("//.*\n", "SINGLELINE_COMMENT")]
self.rules += [Rule.Rule("\n", "CRLF")]
self.rules += [Rule.Rule("\d+", "INTEGER_CONSTANT")]
self.rules += [
Rule.Rule("((-?\d+\.\d*)|(-?\d*\.\d+))([eE]([-\+]?)\d+)?",
"FLOAT_CONSTANT")
]
self.rules += [Rule.Rule("if", "IF")]
self.rules += [Rule.Rule("else", "ELSE")]
self.rules += [Rule.Rule("uniform", "UNIFORM")]
self.rules += [Rule.Rule("const", "CONST")]
self.rules += [Rule.Rule("float", "FLOAT")]
self.rules += [Rule.Rule("int", "INT")]
self.rules += [Rule.Rule("vec2", "VEC2")]
self.rules += [Rule.Rule("vec3", "VEC3")]
self.rules += [Rule.Rule("vec4", "VEC4")]
self.rules += [Rule.Rule("mat2", "MAT2")]
self.rules += [Rule.Rule("mat3", "MAT3")]
self.rules += [Rule.Rule("mat4", "MAT4")]
self.rules += [Rule.Rule("sampler2D", "SAMPLER2D")]
self.rules += [Rule.Rule(";", "SEMICOLON")]
self.rules += [Rule.Rule(",", "COLON")]
self.rules += [Rule.Rule("\.", "DOT")]
self.rules += [Rule.Rule("=", "EQUAL")]
self.rules += [Rule.Rule("<=", "LESSEQUAL")]
self.rules += [Rule.Rule(">=", "GREATEREQUAL")]
self.rules += [Rule.Rule("==", "ISEQUAL")]
self.rules += [Rule.Rule("!=", "NOTEQUAL")]
self.rules += [Rule.Rule("<", "LESSTHAN")]
self.rules += [Rule.Rule(">", "GREATERTHAN")]
self.rules += [Rule.Rule("\+=", "PLUSEQUAL")]
self.rules += [Rule.Rule("\*=", "TIMESEQUAL")]
self.rules += [Rule.Rule("/=", "DIVEQUAL")]
self.rules += [Rule.Rule("-=", "MINUSEQUAL")]
self.rules += [Rule.Rule("\*", "TIMES")]
self.rules += [Rule.Rule("/", "DIVBY")]
self.rules += [Rule.Rule("\+", "PLUS")]
self.rules += [Rule.Rule("-", "MINUS")]
self.rules += [Rule.Rule("\(", "LPAREN")]
self.rules += [Rule.Rule("\)", "RPAREN")]
self.rules += [Rule.Rule("\[", "LBRACKET")]
self.rules += [Rule.Rule("\]", "RBRACKET")]
self.rules += [Rule.Rule("{", "LBRACE")]
self.rules += [Rule.Rule("}", "RBRACE")]
self.rules += [Rule.Rule("[|]{2}", "OR")]
self.rules += [Rule.Rule("[&]{2}", "AND")]
self.rules += [Rule.Rule("gl_FragColor", "GL_FRAGCOLOR")]
self.rules += [Rule.Rule("gl_FragCoord", "GL_FRAGCOORD")]
self.rules += [Rule.Rule("in", "IN_QUALIFIER")]
self.rules += [Rule.Rule("out", "OUT_QUALIFIER")]
self.rules += [Rule.Rule("inout", "INOUT_QUALIFIER")]
self.rules += [Rule.Rule("void", "VOID")]
self.rules += [Rule.Rule("texture", "TEXTURE")]
self.rules += [Rule.Rule("main", "MAIN")]
self.rules += [Rule.Rule("sin", "SIN")]
self.rules += [Rule.Rule("cos", "COS")]
self.rules += [Rule.Rule("tan", "TAN")]
self.rules += [Rule.Rule("asin", "ASIN")]
self.rules += [Rule.Rule("acos", "ACOS")]
self.rules += [Rule.Rule("atan", "ATAN")]
self.rules += [Rule.Rule("sinh", "SINH")]
self.rules += [Rule.Rule("cosh", "COSH")]
self.rules += [Rule.Rule("tanh", "TANH")]
self.rules += [Rule.Rule("asinh", "ASINH")]
self.rules += [Rule.Rule("acosh", "ACOSH")]
self.rules += [Rule.Rule("atanh", "ATANH")]
self.rules += [Rule.Rule("length", "LENGTH")]
self.rules += [Rule.Rule("return", "RETURN")]
self.rules += [Rule.Rule("smoothstep", "SMOOTHSTEP")]
self.rules += [Rule.Rule("step", "STEP")]
self.rules += [Rule.Rule("[a-zA-Z_]+[a-zA-Z0-9_]*", "IDENTIFIER")]
self.index = 0
self.line = 0
self.column = 0
pass
def run_insert_old(case_s, P, R, steps):
resultData = [] #返回总列表
if case_s == 0: #危险源位置设置
Data.FX_N = 19
elif case_s == 1:
Data.FX_N = 15
elif case_s == 2:
Data.FX_N = 10
elif case_s == 3:
Data.FX_N = 5
elif case_s == 4:
Data.FX_N = 2
Data.PEOPLE_DENSYTY = P #行人密度
Data.PEOPLE_NUMBER = int(Data.ROOM_N * Data.ROOM_M *
Data.PEOPLE_DENSYTY) #行人数量
Data.FX_SIGMA_2 = R #危险源大小
Data.FX_R = 2 * np.sqrt(Data.FX_SIGMA_2) # 影响范围半径
Data.FX_P = 2 * Data.FX_SIGMA_2 # 系数 p越大 高斯函数的圆形越大
# init = InitPeolple.InitPeople()#实例化 产生行人类
# draw = DrawFirst.draw()#实例化 画图类
# income = Income.outDirection()
allPeople = InitPeolple.creatPeople() #产生随机行人
# allPeople=init.creatAppointPeo()#产生指定行人
allWall = InitPeolple.creatWall() #创建墙壁
allExit = InitPeolple.creatExit() #创建出口
T = [] #疏散时间
S = [] #剩余行人
V = [] #行人速度
Q = [] #出口流量
Q.append(0) #将出口流量[0]设为0 Q列表少一个数
evac_time = 0 #疏散时间
while Data.flag: #循环开始
move_on_num = 0 #本次时间步移动的行人
move_off_num = 0 #本次时间步静止的行人
vector = 0 #本次时间步行人速度
for p in allPeople: #遍历行人
Income.outDirection(p, allPeople) #计算收益
direction = max(p.allInComeBySort.items(),
key=lambda x: x[1])[0] #获取方向
if direction == 5: #如果行人静止
move_off_num = move_off_num + 1 #计数器+1
else:
move_on_num = move_on_num + 1 #计数器+1
Rule.chickOverAround(p, allPeople) #检测是否到达出口
Rule.PeopleMove(p, direction) #行人移动
# draw.drawPeople(allPeople)#绘制行人
# print(evac_time,"---",len(allPeople),"---",move_on_num/len(allPeople))
if len(allPeople) == 0: #如果行人全部疏散完毕
vector = 1 #速度设为1
Data.flag = False #循环标志--停止
else:
vector = move_on_num / len(allPeople) #行人速度=移动的行人/总行人
if vector > 1: #如果行人速度>1
vector = 1.0 #设置为1
T.append(evac_time) #将疏散时间添加到T
S.append(len(allPeople)) #将剩余行人添加到S
V.append(vector) #将行人速度添加到V
evac_time = evac_time + 1 #疏散时间+1
for i in range(len(S) - 1): #遍历行人
quar = S[i] - S[i + 1] #出口流量=上一步的行人总数-下一步的行人总数
Q.append(quar) #将出口流量添加到Q
'''将各种参数添加到返回列表'''
resultData.append(case_s)
resultData.append(P)
resultData.append(R)
resultData.append(steps)
resultData.append(T)
resultData.append(S)
resultData.append(V)
resultData.append(Q)
return resultData
else:
# Load Things
Env3i.tr = Thing.ThingRegistryClass(Env3i)
conf = read_c.read_things_conf(Env3i.conf_root)
Env3i.tr.load_things(conf)
# Load Rule Subscriptions of Things
for th in Env3i.tr.Things.keys():
tid = Env3i.tr.Things[th].get_tid()
top = Env3i.tr.Things[th].get_topics()
logging.info(f'Loaded device {tid}, needs {top}')
if top is None:
pass
else:
r = RuleClass.Rule(name=tid+":"+top, topic=top, rule_action=Env3i.tr.Things[th])
Env3i.rr.add_rule(r)
logging.info(f'{str(len(Env3i.rr.rules))} topic rules added.')
# Env3i.se = ShadowEngine.ShadowEngineClass(Env3i)
Env3i.mqtt = MQTTHandlerClass.MQTTHandlerClass(Env3i)
Env3i.mqtt.setRuleList(Env3i.rr.rules)
Env3i.mqtt.connect_to_server(m_conf)
i = 0
while True:
Env3i.mqtt.client.loop()
time.sleep(0.25)
class TestRule(unittest.TestCase):
def setUp(self):
self.Aagent1 = Atomic_Agent('S', ['u'], 'cyt')
self.Aagent12 = Atomic_Agent('S', ['p'], 'cyt')
self.Aagent13 = Atomic_Agent('S', ['u', 'p'], 'cyt')
self.Aagent2 = Atomic_Agent('T', ['u'], 'cyt')
self.Aagent22 = Atomic_Agent('T', ['p'], 'cyt')
self.Aagent23 = Atomic_Agent('T', ['u', 'p'], 'cyt')
self.Aagent3 = Atomic_Agent('N', ['u'], 'cyt')
self.Aagent32 = Atomic_Agent('N', ['p'], 'cyt')
self.Aagent33 = Atomic_Agent('N', ['u', 'p'], 'cyt')
self.Aagent4 = Atomic_Agent('N', ['u', 'p'], 'liq')
self.Sagent1 = Structure_Agent('KaiC', [self.Aagent1, self.Aagent2], 'cyt')
self.Sagent2 = Structure_Agent('KaiC', [self.Aagent2, self.Aagent1], 'cyt')
self.Sagent3 = Structure_Agent('KaiC', [self.Aagent2, self.Aagent3], 'cyt')
self.Sagent4 = Structure_Agent('KaiC', [self.Aagent13, self.Aagent23], 'cyt')
self.Sagent5 = Structure_Agent('KaiC', [self.Aagent12, self.Aagent22, self.Aagent32], 'cyt')
self.Sagent6 = Structure_Agent('KaiC', [self.Aagent22, self.Aagent12], 'cyt')
self.Sagent7 = Structure_Agent('KaiC', [self.Aagent13, self.Aagent2], 'cyt')
self.Sagent8 = Structure_Agent('KaiC', [self.Aagent1, self.Aagent23], 'cyt')
self.Sagent9 = Structure_Agent('KaiC', [self.Aagent1, self.Aagent22], 'cyt')
self.Sagent10 = Structure_Agent('KaiC', [], 'cyt')
self.Sagent11 = Structure_Agent('KaiC', [self.Aagent1], 'cyt')
self.Sagent12 = Structure_Agent('KaiC', [self.Aagent12], 'cyt')
self.Sagent13 = Structure_Agent('KaiC', [self.Aagent23, self.Aagent33], 'cyt')
self.Sagent14 = Structure_Agent('KaiC', [self.Aagent12, self.Aagent23, self.Aagent33], 'cyt')
self.Xagent1 = Complex_Agent([self.Sagent1, self.Sagent2], 'cyt')
self.Xagent2 = Complex_Agent([self.Sagent2, self.Sagent1], 'cyt')
self.Xagent3 = Complex_Agent([self.Sagent1, self.Sagent3], 'cyt')
self.Xagent4 = Complex_Agent([self.Sagent3, self.Sagent1], 'cyt')
self.Xagent5 = Complex_Agent([self.Sagent4, self.Sagent1], 'cyt')
self.Xagent6 = Complex_Agent([self.Sagent1, self.Sagent1], 'cyt')
self.Xagent7 = Complex_Agent([self.Sagent11, self.Sagent10, self.Sagent10], 'cyt')
self.Xagent8 = Complex_Agent([self.Sagent1, self.Sagent4, self.Sagent9], 'cyt')
self.Xagent9 = Complex_Agent([self.Sagent5, self.Sagent4, self.Sagent9], 'cyt')
self.Xagent10 = Complex_Agent([self.Aagent1, self.Aagent1], 'cyt')
self.Xagent11 = Complex_Agent([self.Sagent12, self.Sagent10, self.Sagent10], 'cyt')
self.Xagent12 = Complex_Agent([self.Sagent11, self.Sagent4, self.Sagent5], 'cyt')
self.Xagent13 = Complex_Agent([self.Sagent12, self.Sagent4, self.Sagent5], 'cyt')
self.Xagent14 = Complex_Agent([self.Sagent1, self.Sagent3, self.Sagent5], 'cyt')
self.Xagent15 = Complex_Agent([self.Sagent4, self.Sagent13], 'cyt')
self.Xagent16 = Complex_Agent([self.Sagent4, self.Sagent13, self.Sagent14], 'cyt')
self.Xagent17 = Complex_Agent([self.Sagent10, self.Sagent10], 'cyt')
self.Xagent18 = Complex_Agent([self.Sagent6, self.Sagent1], 'cyt')
self.Xagent19 = Complex_Agent([self.Sagent1, self.Sagent6], 'cyt')
self.Xagent20 = Complex_Agent([self.Sagent4, self.Sagent4], 'cyt')
self.Xagent21 = Complex_Agent([self.Sagent4, self.Sagent4, self.Sagent4, self.Sagent4], 'cyt')
self.Xagent22 = Complex_Agent([self.Sagent6, self.Sagent1, self.Sagent6, self.Sagent1], 'cyt')
self.Xagent23 = Complex_Agent([self.Sagent6, self.Sagent1, self.Sagent1, self.Sagent6], 'cyt')
self.Xagent24 = Complex_Agent([self.Sagent1, self.Sagent6, self.Sagent6, self.Sagent1], 'cyt')
self.Xagent25 = Complex_Agent([self.Sagent1, self.Sagent6, self.Sagent1, self.Sagent6], 'cyt')
self.Xagent26 = Complex_Agent([self.Sagent6, self.Sagent6], 'cyt')
self.Rule1 = Rule([self.Aagent1], [self.Aagent12])
self.Rule2 = Rule([self.Sagent1], [self.Sagent9])
self.Rule3 = Rule([self.Aagent32], [])
self.Rule4 = Rule([self.Aagent1, self.Aagent1], [self.Xagent10])
self.Rule5 = Rule([], [self.Aagent32])
self.Rule6 = Rule([self.Xagent7], [self.Xagent11])
self.Rule7 = Rule([self.Xagent15, self.Sagent14], [self.Xagent16])
self.Rule8 = Rule([self.Sagent10, self.Sagent10], [self.Xagent17])
self.Rule9 = Rule([self.Xagent20, self.Xagent20], [self.Xagent21])
self.Rule10 = Rule([self.Xagent10], [self.Aagent1, self.Aagent1])
self.Rule11 = Rule([self.Xagent16], [self.Xagent15, self.Sagent14])
self.Rule12 = Rule([self.Xagent21], [self.Xagent20, self.Xagent20])
self.Rule13 = Rule([self.Aagent33], [self.Aagent4])
self.Rule14 = Rule([], [])
self.Rule15 = Rule([], [])
self.Rule16 = Rule([], [])
self.Rule17 = Rule([], [])
self.Rule18 = Rule([], [])
self.Rule19 = Rule([], [])
self.Rule20 = Rule([], [])
def test_equal(self):
self.assertTrue(self.Rule1.__eq__(self.Rule1))
self.assertTrue(self.Rule2.__eq__(self.Rule2))
self.assertFalse(self.Rule1.__eq__(self.Rule2))
def test_print(self):
self.assertEqual(self.Rule1.__str__(), self.Rule1.__str__())
self.assertEqual(self.Rule1.__str__(), "S{u}::cyt => S{p}::cyt")
def test_hash(self):
self.assertNotEqual(hash(self.Rule1), hash(self.Rule2))
self.assertEqual(hash(self.Rule2), hash(self.Rule2))
def test_checkcandidateAndLhs(self):
self.assertTrue(self.Rule7.checkcandidateAndLhs([self.Xagent3, self.Sagent5]))
self.assertFalse(self.Rule7.checkcandidateAndLhs([self.Xagent4, self.Sagent5]))
def test_match(self):
candidate1 = [self.Xagent3, self.Sagent5]
self.assertEqual(self.Rule7.match(candidate1), [tuple(candidate1)])
def test_formComplex(self):
candidate_old = [self.Aagent1, self.Aagent1]
candidate_new = [self.Xagent10]
self.assertEqual(self.Rule4.formComplex(candidate_old), candidate_new)
candidate_old = [self.Xagent3, self.Sagent5]
candidate_new = [self.Xagent14]
self.assertEqual(self.Rule7.formComplex(candidate_old), candidate_new)
def test_dissociateComplex(self):
candidate_old = [self.Xagent10]
candidate_new = [self.Aagent1, self.Aagent1]
self.assertEqual(self.Rule10.dissociateComplex(candidate_old), candidate_new)
candidate_old = [self.Xagent14]
candidate_new = [self.Xagent3, self.Sagent5]
self.assertEqual(self.Rule11.dissociateComplex(candidate_old), candidate_new)
def test_translate(self):
candidate_old = []
candidate_new = [self.Aagent32 ]
self.assertEqual(self.Rule5.translate(), candidate_new)
def test_degrade(self):
candidate_old = [self.Aagent32]
candidate_new = []
self.assertEqual(self.Rule3.degrade(candidate_old), candidate_new)
def test_changeAtomicStates(self):
self.assertEqual(changeAtomicStates(self.Aagent12, self.Aagent1), self.Aagent12)
def test_changeStructureStates(self):
self.assertEqual(changeStructureStates(self.Sagent9, self.Sagent1), self.Sagent9)
def test_changeComplexStates(self):
self.assertEqual(changeComplexStates(self.Xagent11, self.Xagent12), self.Xagent13)
def test_replace(self):
candidate_old = [self.Aagent1, self.Aagent1]
candidate_new = [self.Xagent10]
self.assertEqual(self.Rule4.replace(candidate_old), candidate_new)
candidate_old = []
candidate_new = [self.Aagent32]
self.assertEqual(self.Rule5.replace(candidate_old), candidate_new)
candidate_old = [self.Aagent32]
candidate_new = []
self.assertEqual(self.Rule3.replace(candidate_old), candidate_new)
candidate_old = [self.Aagent1]
candidate_new = [self.Aagent12]
self.assertEqual(self.Rule1.replace(candidate_old), candidate_new)
candidate_old = [self.Sagent1]
candidate_new = [self.Sagent9]
self.assertEqual(self.Rule2.replace(candidate_old), candidate_new)
candidate_old = [self.Xagent12]
candidate_new = [self.Xagent13]
self.assertEqual(self.Rule6.replace(candidate_old), candidate_new)
candidate_old = [self.Xagent10]
candidate_new = [self.Aagent1, self.Aagent1]
self.assertEqual(self.Rule10.replace(candidate_old), candidate_new)
def test_replacement(self):
candidate_old = [self.Xagent3, self.Sagent5]
candidate_new = [[self.Xagent14]]
self.assertEqual(sorted(self.Rule7.replacement(candidate_old)), sorted(candidate_new))
candidate_old = [self.Sagent1, self.Sagent3]
candidate_new = [[self.Xagent3]]
self.assertEqual(sorted(self.Rule8.replacement(candidate_old)), sorted(candidate_new))
candidate_old = [self.Xagent18, self.Xagent19]
candidate_new = [[self.Xagent22]]
self.assertEqual(sorted(self.Rule9.replacement(candidate_old)), sorted(candidate_new))
candidate_old = [self.Xagent22]
candidate_new = [[self.Xagent19, self.Xagent19], [self.Xagent6, self.Xagent26]]
self.assertEqual(sorted(self.Rule12.replacement(candidate_old)), sorted(candidate_new))
candidate_old = [self.Aagent33]
candidate_new = [[self.Aagent4]]
self.assertEqual(sorted(self.Rule13.replacement(candidate_old)), sorted(candidate_new))
def dataMine(): rules = Rulesets(frequentItemSets()) Rule.remove_all() for rule in rules: Rule.add_rule(rule[0],rule[1],rule[2])
def setUp(self):
self.Aagent1 = Atomic_Agent('S', ['u'], 'cyt')
self.Aagent12 = Atomic_Agent('S', ['p'], 'cyt')
self.Aagent13 = Atomic_Agent('S', ['u', 'p'], 'cyt')
self.Aagent2 = Atomic_Agent('T', ['u'], 'cyt')
self.Aagent22 = Atomic_Agent('T', ['p'], 'cyt')
self.Aagent23 = Atomic_Agent('T', ['u', 'p'], 'cyt')
self.Aagent3 = Atomic_Agent('N', ['u'], 'cyt')
self.Aagent32 = Atomic_Agent('N', ['p'], 'cyt')
self.Aagent33 = Atomic_Agent('N', ['u', 'p'], 'cyt')
self.Aagent4 = Atomic_Agent('N', ['u', 'p'], 'liq')
self.Sagent1 = Structure_Agent('KaiC', [self.Aagent1, self.Aagent2], 'cyt')
self.Sagent2 = Structure_Agent('KaiC', [self.Aagent2, self.Aagent1], 'cyt')
self.Sagent3 = Structure_Agent('KaiC', [self.Aagent2, self.Aagent3], 'cyt')
self.Sagent4 = Structure_Agent('KaiC', [self.Aagent13, self.Aagent23], 'cyt')
self.Sagent5 = Structure_Agent('KaiC', [self.Aagent12, self.Aagent22, self.Aagent32], 'cyt')
self.Sagent6 = Structure_Agent('KaiC', [self.Aagent22, self.Aagent12], 'cyt')
self.Sagent7 = Structure_Agent('KaiC', [self.Aagent13, self.Aagent2], 'cyt')
self.Sagent8 = Structure_Agent('KaiC', [self.Aagent1, self.Aagent23], 'cyt')
self.Sagent9 = Structure_Agent('KaiC', [self.Aagent1, self.Aagent22], 'cyt')
self.Sagent10 = Structure_Agent('KaiC', [], 'cyt')
self.Sagent11 = Structure_Agent('KaiC', [self.Aagent1], 'cyt')
self.Sagent12 = Structure_Agent('KaiC', [self.Aagent12], 'cyt')
self.Sagent13 = Structure_Agent('KaiC', [self.Aagent23, self.Aagent33], 'cyt')
self.Sagent14 = Structure_Agent('KaiC', [self.Aagent12, self.Aagent23, self.Aagent33], 'cyt')
self.Xagent1 = Complex_Agent([self.Sagent1, self.Sagent2], 'cyt')
self.Xagent2 = Complex_Agent([self.Sagent2, self.Sagent1], 'cyt')
self.Xagent3 = Complex_Agent([self.Sagent1, self.Sagent3], 'cyt')
self.Xagent4 = Complex_Agent([self.Sagent3, self.Sagent1], 'cyt')
self.Xagent5 = Complex_Agent([self.Sagent4, self.Sagent1], 'cyt')
self.Xagent6 = Complex_Agent([self.Sagent1, self.Sagent1], 'cyt')
self.Xagent7 = Complex_Agent([self.Sagent11, self.Sagent10, self.Sagent10], 'cyt')
self.Xagent8 = Complex_Agent([self.Sagent1, self.Sagent4, self.Sagent9], 'cyt')
self.Xagent9 = Complex_Agent([self.Sagent5, self.Sagent4, self.Sagent9], 'cyt')
self.Xagent10 = Complex_Agent([self.Aagent1, self.Aagent1], 'cyt')
self.Xagent11 = Complex_Agent([self.Sagent12, self.Sagent10, self.Sagent10], 'cyt')
self.Xagent12 = Complex_Agent([self.Sagent11, self.Sagent4, self.Sagent5], 'cyt')
self.Xagent13 = Complex_Agent([self.Sagent12, self.Sagent4, self.Sagent5], 'cyt')
self.Xagent14 = Complex_Agent([self.Sagent1, self.Sagent3, self.Sagent5], 'cyt')
self.Xagent15 = Complex_Agent([self.Sagent4, self.Sagent13], 'cyt')
self.Xagent16 = Complex_Agent([self.Sagent4, self.Sagent13, self.Sagent14], 'cyt')
self.Xagent17 = Complex_Agent([self.Sagent10, self.Sagent10], 'cyt')
self.Xagent18 = Complex_Agent([self.Sagent6, self.Sagent1], 'cyt')
self.Xagent19 = Complex_Agent([self.Sagent1, self.Sagent6], 'cyt')
self.Xagent20 = Complex_Agent([self.Sagent4, self.Sagent4], 'cyt')
self.Xagent21 = Complex_Agent([self.Sagent4, self.Sagent4, self.Sagent4, self.Sagent4], 'cyt')
self.Xagent22 = Complex_Agent([self.Sagent6, self.Sagent1, self.Sagent6, self.Sagent1], 'cyt')
self.Xagent23 = Complex_Agent([self.Sagent6, self.Sagent1, self.Sagent1, self.Sagent6], 'cyt')
self.Xagent24 = Complex_Agent([self.Sagent1, self.Sagent6, self.Sagent6, self.Sagent1], 'cyt')
self.Xagent25 = Complex_Agent([self.Sagent1, self.Sagent6, self.Sagent1, self.Sagent6], 'cyt')
self.Xagent26 = Complex_Agent([self.Sagent6, self.Sagent6], 'cyt')
self.Rule1 = Rule([self.Aagent1], [self.Aagent12])
self.Rule2 = Rule([self.Sagent1], [self.Sagent9])
self.Rule3 = Rule([self.Aagent32], [])
self.Rule4 = Rule([self.Aagent1, self.Aagent1], [self.Xagent10])
self.Rule5 = Rule([], [self.Aagent32])
self.Rule6 = Rule([self.Xagent7], [self.Xagent11])
self.Rule7 = Rule([self.Xagent15, self.Sagent14], [self.Xagent16])
self.Rule8 = Rule([self.Sagent10, self.Sagent10], [self.Xagent17])
self.Rule9 = Rule([self.Xagent20, self.Xagent20], [self.Xagent21])
self.Rule10 = Rule([self.Xagent10], [self.Aagent1, self.Aagent1])
self.Rule11 = Rule([self.Xagent16], [self.Xagent15, self.Sagent14])
self.Rule12 = Rule([self.Xagent21], [self.Xagent20, self.Xagent20])
self.Rule13 = Rule([self.Aagent33], [self.Aagent4])
self.Rule14 = Rule([], [])
self.Rule15 = Rule([], [])
self.Rule16 = Rule([], [])
self.Rule17 = Rule([], [])
self.Rule18 = Rule([], [])
self.Rule19 = Rule([], [])
self.Rule20 = Rule([], [])