def test3(self):
matrix = SmithWaterman.create_matrix(2, 5)
self.assertEqual([
[0, 0, 0, 0, 0, 0],
[0, 0, 0, 0, 0, 0],
[0, 0, 0, 0, 0, 0],
], matrix)
def test4(self):
matrix = SmithWaterman.create_matrix(5, 2)
self.assertEqual(
[[0, 0, 0], [0, 0, 0], [0, 0, 0], [0, 0, 0], [0, 0, 0], [0, 0, 0]],
matrix)
import SmithWaterman
import AlignmentTools
file1 = SmithWaterman.get_file_data("Enter first file name: ")
file2 = SmithWaterman.get_file_data("Enter second file name: ")
file1list = list(file1)
file2list = list(file2)
file1len = len(file1list)
file2len = len(file2list)
matrix = SmithWaterman.create_matrix(file1len, file2len)
AlignmentTools.fill_matrix(file1list, file2list, matrix)
alignment = SmithWaterman.do_alignment(file1list, file2list, matrix)
print(''.join(alignment[0]))
print(''.join(alignment[1]))
print(''.join(alignment[2]))
