def test_annotateAndAnnotated(self):
# There's a bug somewhere which means annotating the table with the
# version annotation, then using the table as a FileAnnotation on
# an object, causes the version annotation to be lost
# Closing and reopening the table seems to work (see
# FeatureTable.createTable)
cli, sess = self.create_client()
ft = FeatureTable(client=cli, tableName=self.tableName)
fts = ['a [0]', 'a [1]', 'b [0]']
ft.createTable(fts, version=self.version)
tid = ft.tc.tableId
self.assertEqual(self.version, unwrapVersion(ft.versiontag))
vertag = WndcharmStorage.getVersion(ft.conn, 'OriginalFile', tid)
self.assertEqual(self.version, unwrapVersion(vertag))
p = omero.model.ProjectI()
p.setName(wrap('tmp'))
p = self.sess.getUpdateService().saveAndReturnObject(p)
pid = unwrap(p.getId())
p = ft.conn.getObject('Project', pid)
WndcharmStorage.addFileAnnotationTo(ft.tc, p)
vertag = WndcharmStorage.getVersion(ft.conn, 'OriginalFile', tid)
self.assertEqual(self.version, unwrapVersion(vertag))
self.delete('/Project', pid)
self.delete('/OriginalFile', tid)
def checkClassifierTablesVersion(self, ct):
self.assertEqual(unwrapVersion(ct.versiontag), self.version)
verF = WndcharmStorage.getVersion(
ct.tcF.conn, 'OriginalFile', ct.tcF.tableId)
self.assertEqual(unwrapVersion(verF), self.version)
verW = WndcharmStorage.getVersion(
ct.tcW.conn, 'OriginalFile', ct.tcW.tableId)
self.assertEqual(unwrapVersion(verW), self.version)
verL = WndcharmStorage.getVersion(
ct.tcL.conn, 'OriginalFile', ct.tcL.tableId)
self.assertEqual(unwrapVersion(verL), self.version)
def test_versionAnnotation(self):
version = str(uuid.uuid1())
created = WndcharmStorage.createVersionAnnotation(self.conn, version)
retrieved = WndcharmStorage.getVersionAnnotation(self.conn, version)
self.assertEqual(unwrap(created.getNs()),
WndcharmStorage.WNDCHARM_VERSION_NAMESPACE)
self.assertEqual(unwrapVersion(created), version)
self.assertEqual(unwrap(retrieved.getNs()),
WndcharmStorage.WNDCHARM_VERSION_NAMESPACE)
self.assertEqual(unwrapVersion(retrieved), version)
pid = self.create_project('versionAnnotation')
self.assertIsNone(WndcharmStorage.getVersion(self.conn, 'Project', pid))
WndcharmStorage.addTagTo(self.conn, retrieved, 'Project', pid)
a = WndcharmStorage.getVersion(self.conn, 'Project', pid)
self.assertEqual(unwrap(a.getNs()),
WndcharmStorage.WNDCHARM_VERSION_NAMESPACE)
self.assertEqual(unwrapVersion(a), version)
self.delete('/Project', pid)
def test_createTable(self):
tid = self.create_table()
ft = FeatureTable(client=self.cli, tableName=self.tableName)
ft.openTable(tid)
self.assertEqual(self.version, unwrapVersion(ft.versiontag))
vertag = WndcharmStorage.getVersion(ft.conn, 'OriginalFile', tid)
self.assertEqual(self.version, unwrapVersion(vertag))
headers = ft.tc.getHeaders()
self.assertEqual(len(headers), 3)
self.assertEqual([h.name for h in headers], ['id', 'a', 'b'])
self.assertEqual([h.size for h in headers[1:]], [2, 1])
def test_getVersion(self):
version = str(uuid.uuid1())
tableid = self.create_table()
file = omero.model.OriginalFileI(tableid, False)
version = str(uuid.uuid1())
tagid = self.create_tag(version, WndcharmStorage.WNDCHARM_VERSION_NAMESPACE)
tag = omero.model.TagAnnotationI(tagid, False)
link = omero.model.OriginalFileAnnotationLinkI()
link.setChild(tag)
link.setParent(file)
link = self.sess.getUpdateService().saveAndReturnObject(link)
retrieved = WndcharmStorage.getVersion(
self.conn, 'OriginalFile', unwrap(file.getId()))
self.assertEqual(unwrapVersion(retrieved), version)
