'gui': SelectRootGUI
},
{
'name': 'AD41tors_autoRoot',
'cmd': AutoRoot(),
'gui': AutoRootGUI
},
# {'name':'AD41tors_addChainToRootGC','cmd':AddChainToRootGUICommand(),
# 'gui':AddChainToRootGUICommandGUI},
# {'name':'AD41tors_addChainToRoot','cmd':AddChainToRoot(),'gui':None},
# {'name':'AD41tors_removeChainFromRootGC','cmd':RemoveChainFromRootGUICommand(),
# 'gui':RemoveChainFromRootGUICommandGUI},
# {'name':'AD41tors_removeChainFromRoot','cmd':RemoveChainFromRoot(),'gui':None},
{
'name': 'AD41tors_markRoot',
'cmd': MarkRoot(),
'gui': MarkRootGUI
},
{
'name': 'AD41tors_showRootSphere',
'cmd': TogglerootSphere(),
'gui': TogglerootSphereGUI
},
{
'name': 'AD41tors_defineRotBonds',
'cmd': DefiningRotatableBonds(),
'gui': DefiningRotatableBondsGUI
},
{
'name': 'AD41tors_limitTorsionsGC',
'cmd': SetTorsionNumberGUICommand(),
'gui':Ators41MoleculeChooserGUI},
{'name':'AD41tors_rigidLigand','cmd':RigidMolecule4(),
'gui':RigidMolecule41GUI},
{'name':'AD41tors_automaticLigandFormatting','cmd':AutoAutoTors(),
'gui':AutoAutoTorsGUI},
# {'name':'AD41tors_writeRef','cmd':AtorsRefWriter(),
# 'gui':AtorsRefWriterGUI},
{'name':'AD41tors_setRoot','cmd':SelectRoot(),'gui':SelectRootGUI},
{'name':'AD41tors_autoRoot','cmd':AutoRoot(),'gui':AutoRootGUI},
# {'name':'AD41tors_addChainToRootGC','cmd':AddChainToRootGUICommand(),
# 'gui':AddChainToRootGUICommandGUI},
# {'name':'AD41tors_addChainToRoot','cmd':AddChainToRoot(),'gui':None},
# {'name':'AD41tors_removeChainFromRootGC','cmd':RemoveChainFromRootGUICommand(),
# 'gui':RemoveChainFromRootGUICommandGUI},
# {'name':'AD41tors_removeChainFromRoot','cmd':RemoveChainFromRoot(),'gui':None},
{'name':'AD41tors_markRoot','cmd':MarkRoot(),'gui':MarkRootGUI},
{'name':'AD41tors_showRootSphere','cmd':TogglerootSphere(),
'gui':TogglerootSphereGUI},
{'name':'AD41tors_defineRotBonds', 'cmd':DefiningRotatableBonds(),
'gui':DefiningRotatableBondsGUI },
{'name':'AD41tors_limitTorsionsGC','cmd':SetTorsionNumberGUICommand(),
'gui':SetTorsionNumberGUICommandGUI},
## {'name':'AD41tors_changePlanarCarbonsToA','cmd':CheckAromatic(),
## 'gui':CheckAromaticGUI},
## {'name':'AD41tors_changeAromaticCarbonsToC','cmd':StopCheckAromatic(),
## 'gui':StopCheckAromaticGUI},
{'name':'AD41tors_setCarbonNames','cmd':SetCarbonNames(),
'gui':SetCarbonNamesGUI},
{'name':'AD41tors_changePlanarityCriteria','cmd':ChangeAromaticCutOff(),
'gui':ChangeAromaticCutOffGUI},
{'name':'AD41tors_writeFormattedPDBQT','cmd':AUTOTORS4Writer(),