def test_sequence_identifer_nonsense(self):
bio = Bioinfo(test_txt_nonsense)
self.assertFalse(bio.sequence_identifer())
def test_sequence_identifer_dna(self):
bio = Bioinfo(test_fasta_dna)
self.assertTrue(bio.sequence_identifer())
def test_sequence_identifer_protein(self):
bio = Bioinfo(test_fasta_protein)
self.assertTrue(bio.sequence_identifer())
def test_sequence_identifer_empty(self):
with self.assertRaises(SystemExit) as cm:
bio = Bioinfo(test_fasta_empty)
bio.sequence_identifer()
self.assertEqual(cm.exception.code, 1)
def test_sequence_identifer_lower_case(self):
with self.assertRaises(SystemExit):
bio = Bioinfo(test_txt_lowercase)
self.assertFalse(bio.sequence_identifer())
def test_change_characters_list_as_translate_dict(self):
with self.assertRaises(SystemExit) as cm:
bio = Bioinfo(test_fasta_dna)
bio.change_characters(test_string, test_list)
self.assertEqual(cm.exception.code, 1)
def test_Bioinfo_Input_text(self):
self.assertTrue(Bioinfo(test_txt_dna))
def test_splice_string_by_position(self):
bio = Bioinfo(test_fasta_dna)
self.assertTrue(bio.splice_string_by_position(3), list)
def test_Bioinfo_Input_dict(self):
with self.assertRaises(SystemExit) as cm:
bio = Bioinfo(test_dict)
self.assertEqual(cm.exception.code, 1)
def test_splice_string_by_charater(self):
bio = Bioinfo(test_fasta_dna)
self.assertIsInstance(bio.splice_string_by_charaters("A", "T"), list)
def test_splice_string_by_position_step_to_big(self):
with self.assertRaises(SystemExit) as cm:
bio = Bioinfo(test_fasta_empty)
bio.splice_string_by_position(0,2)
self.assertEqual(cm.exception.code, 1)
def test_splice_string_by_charater_invalid_charater2(self):
with self.assertRaises(SystemExit) as cm:
bio = Bioinfo(test_fasta_empty)
bio.splice_string_by_charaters("", "A")
self.assertEqual(cm.exception.code, 1)
def test_change_characters_tuple_as_template(self):
bio = Bioinfo(test_fasta_dna)
self.assertTrue(bio.change_characters(test_tuple, test_dict))
def test_change_characters_dict_as_template(self):
with self.assertRaises(SystemExit) as cm:
bio = Bioinfo(test_fasta_dna)
bio.change_characters(test_dict, test_dict)
self.assertEqual(cm.exception.code, 1)
def test_count_characters_search_for_Strings(self):
bio = Bioinfo(test_fasta_dna)
self.assertTrue(bio.count_characters("A", "T", "G", "C", "AAA"))
def test_Bioinfo_Input_fasta(self):
self.assertTrue(Bioinfo(test_fasta_dna))
def test_count_characters_search_for_not_Strings(self):
with self.assertRaises(TypeError) as cm:
bio = Bioinfo(test_fasta_dna)
bio.count_characters(1,2,3,4)
self.assertEqual(type(cm.exception), TypeError)
def test_change_characters_dict_as_translate_dict(self):
bio = Bioinfo(test_fasta_dna)
self.assertTrue(bio.change_characters(test_string, test_dict))
