os.environ['DJANGO_SETTINGS_MODULE']='settings'
project_dir = os.path.dirname(__file__)
parentDir = os.path.join(os.path.dirname(__file__), "../")
sys.path.insert(0, parentDir) # settings.py is one dir up
from CCE import CCELoader
cl = CCELoader('stoqs_beds_canyon_events', 'BEDS - Canyon Events',
description = 'Benthic Event Detector data for significant events in Monterey Canyon',
x3dTerrains = {
'http://stoqs.mbari.org/terrain/MontereyCanyonBeds_1m+5m_1x_src/MontereyCanyonBeds_1m+5m_1x_src_scene.x3d': {
'position': '2232.80938 10346.25515 3543.76722',
'orientation': '-0.98394 0.16804 -0.06017 1.25033',
'centerOfRotation': '0 0 0',
'VerticalExaggeration': '1',
'geoOrigin': '36.80, -121.87, -400',
'speed': '1.0',
'zNear': '100.0',
'zFar': '30000.0',
},
},
# Do not check in .grd files to the repository, keep them in the loaders directory
grdTerrain=os.path.join(parentDir, 'MontereyCanyonBeds_1m+5m.grd'),
)
# Base OPeNDAP server
cl.bed_base = 'http://dods.mbari.org/opendap/data/beds/CanyonEvents/'
# Copied from ProjectLibrary to Hyrax server on elvis with:
# rsync -r /mbari/ProjectLibrary/901006.BEDS/BEDS.Data/CanyonEvents /var/www/dods_html/data/beds
cl.bed_parms = ['XA', 'YA', 'ZA', 'A', 'XR', 'YR', 'ZR', 'ROT_RATE', 'ROT_COUNT', 'P', 'P_ADJUSTED',
project_dir = os.path.dirname(__file__)
parentDir = os.path.join(os.path.dirname(__file__), "../")
sys.path.insert(0, parentDir) # settings.py is one dir up
from CCE import CCELoader
import timing
cl = CCELoader('stoqs_beds_canyon_events', 'BEDS - Canyon Events',
description = 'Benthic Event Detector data for significant events in Monterey Canyon',
x3dTerrains = {
'https://stoqs.mbari.org/terrain/MontereyCanyonBeds_1m+5m_1x_src/MontereyCanyonBeds_1m+5m_1x_src_scene.x3d': {
'position': '2232.80938 10346.25515 3543.76722',
'orientation': '-0.98394 0.16804 -0.06017 1.25033',
'centerOfRotation': '0 0 0',
'VerticalExaggeration': '1',
'geoOrigin': '36.80, -121.87, -400',
'speed': '1.0',
'zNear': '100.0',
'zFar': '30000.0',
},
},
# Do not check in .grd files to the repository, keep them in the loaders directory
grdTerrain=os.path.join(parentDir, 'MontereyCanyonBeds_1m+5m.grd'),
)
# Base OPeNDAP server
cl.bed_base = 'http://dods.mbari.org/opendap/data/beds/CanyonEvents/'
# Copied from ProjectLibrary to Hyrax server on elvis with:
# rsync -r /mbari/ProjectLibrary/901006.BEDS/BEDS.Data/CanyonEvents /var/www/dods_html/data/beds
cl.bed_parms = ['XA', 'YA', 'ZA', 'A', 'XR', 'YR', 'ZR', 'ROT_RATE', 'ROT_COUNT', 'P', 'P_ADJUSTED',
def __init__(self,
db_alias='stoqs_cce2015',
campaign_name='Coordinated Canyon Experiment'):
self.cl = CCELoader(
db_alias,
campaign_name,
description=
'Coordinated Canyon Experiment - Measuring turbidity flows in Monterey Submarine Canyon',
x3dTerrains={
'https://stoqs.mbari.org/x3d/MontereyCanyonBeds_1m+5m_1x_src/MontereyCanyonBeds_1m+5m_1x_src_scene.x3d':
{
'name': 'MontereyCanyonBeds_1m+5m_1x',
'position': '2232.80938 10346.25515 3543.76722',
'orientation': '-0.98394 0.16804 -0.06017 1.25033',
'centerOfRotation': '0 0 0',
'VerticalExaggeration': '1',
'geoOrigin': '36.80, -121.87, -400',
'speed': '1.0',
'zNear': '100.0',
'zFar': '30000.0',
'selected': '1'
},
'https://stoqs.mbari.org/x3d/Monterey25_1x/Monterey25_1x_src_scene.x3d':
{
'name': 'Monterey25_1x',
'position': '-32985.28634 88026.90417 22334.02600',
'orientation': '-0.99875 -0.04772 0.01482 1.31683',
'centerOfRotation':
'-20564.015827789044 -1956.065669754069 14112.954469753739',
'VerticalExaggeration': '1',
'geoOrigin': '36.80, -121.87, -400',
'speed': '1.0',
'zNear': '-1',
'zFar': '-1',
},
},
# Do not check in .grd files to the repository, keep them in the loaders directory
grdTerrain=os.path.join(parent_dir,
'MontereyCanyonBeds_1m+5m.grd'),
##grdTerrain=os.path.join(parent_dir, 'Monterey25.grd'),
)
# Base OPeNDAP server
self.cl.bed_base = 'http://dods.mbari.org/opendap/data/CCE_Processed/BEDs/'
# Copied from ProjectLibrary to BEDs SVN working dir for netCDF conversion, and then copied to elvis.
# See BEDs/BEDs/Visualization/py/makeBEDNetCDF_CCE.sh
self.cl.bed_parms = [
'XA', 'YA', 'ZA', 'A', 'XR', 'YR', 'ZR', 'ROT_RATE', 'ROT_COUNT',
'P', 'P_ADJUSTED', 'P_RATE', 'P_SPLINE', 'P_SPLINE_RATE',
'ROT_DIST', 'IMPLIED_VELOCITY', 'BED_DEPTH_CSI', 'BED_DEPTH',
'BED_DEPTH_LI', 'DIST_TOPO', 'TUMBLE_RATE', 'TUMBLE_COUNT', 'TIDE',
'ROT_X', 'ROT_Y', 'ROT_Z', 'AXIS_X', 'AXIS_Y', 'AXIS_Z', 'ANGLE'
]
# Several BED files: 30200078 to 3020080
# bed_files, bed_platforms, bed_depths must have same number of items; they are zipped together in the load
##self.cl.bed_files = [(f'CanyonEvents/BED3/20151001_20160115/{n}.nc') for n in range(30200078, 30200081)]
##self.cl.bed_platforms = ['BED03'] * len(self.cl.bed_files)
##self.cl.bed_depths = [201] * len(self.cl.bed_files)
# Just the event files for the CCE
self.cl.bed_files_framegrabs_2015 = [
('BED04/MBCCE_BED04_20151004_Event20151201/netcdf/40100037_full_traj.nc',
'http://search.mbari.org/ARCHIVE/frameGrabs/Ventana/stills/2015/vnta3872/00_17_50_24.html'
),
('BED05/MBCCE_BED05_20151027_Event20151201/netcdf/50200024_decim_traj.nc',
'http://search.mbari.org/ARCHIVE/frameGrabs/Ventana/stills/2015/vnta3873/00_29_56_03.html'
),
]
self.cl.bed_files_framegrabs_2016 = [
('BED03/20151001_20160115/netcdf/30200078_full_traj.nc',
'http://search.mbari.org/ARCHIVE/frameGrabs/Ventana/stills/2015/vnta3874/00_21_23_28.html'
),
('BED06/20151001_20160115/netcdf/60100068_full_traj.nc',
'http://search.mbari.org/ARCHIVE/frameGrabs/Ventana/stills/2015/vnta3870/00_15_38_23.html'
),
('BED03/MBCCE_BED03_20160212_Event20160217/netcdf/30300004_decim_traj.nc',
''),
('BED05/MBCCE_BED05_20151027_Event20160115/netcdf/50200054_decim_traj.nc',
''),
('BED05/MBCCE_BED05_20151027_Event20160115/netcdf/50200055_decim_traj.nc',
''),
('BED05/MBCCE_BED05_20151027_Event20160115/netcdf/50200056_decim_traj.nc',
''),
('BED05/MBCCE_BED05_20151027_Event20160115/netcdf/50200057_decim_traj.nc',
''),
('BED03/MBCCE_BED03_20160212_Event20160306/netcdf/30300016_decim_traj.nc',
''),
('BED06/MBCCE_BED06_20160222_Event20160306/netcdf/60200011_decim_traj.nc',
''),
('BED06/MBCCE_BED06_20160222_Event20160306/netcdf/60200012_decim_traj.nc',
''),
('BED06/MBCCE_BED06_20160222_Event20160901/netcdf/60200130_decim_traj.nc',
''),
('BED09/MBCCE_BED09_20160408_Event20160901/netcdf/90100096_decim_traj.nc',
'http://search.mbari.org/ARCHIVE/frameGrabs/Ventana/stills/2016/vnta3922/02_55_51_27.html'
),
('BED10/MBCCE_BED10_20160408_Event20160901/netcdf/A0100096_decim_traj.nc',
'http://search.mbari.org/ARCHIVE/frameGrabs/Ventana/stills/2016/vnta3921/02_05_37_16.html'
),
# Uncomment to test 3D replay of BED motion - it should rotate only around the X-Axis
##('BED00/Simulated/netcdf/BED00_SIM_rolling_trajectory.nc',
## ''),
] + [(
f'BED09/MBCCE_BED09_20160408_Event20161124/netcdf/901001{n}_full_traj.nc',
''
) for n in (list(range(56, 63)) + list(range(64, 65)))] + [
('BED09/MBCCE_BED09_20160408_Event20161124/netcdf/90100165_full.nc',
''),
('BED03/MBCCE_BED03_20161005_Event20161124/netcdf/30400015_decim_traj.nc',
''),
('BED10/MBCCE_BED10_20160408_Event20161124/netcdf/A0100154_decim_traj.nc',
''),
('BED04/MBCCE_BED04_20151004_Event20161124/netcdf/40200014_decim_traj.nc',
''),
]
self.cl.bed_files_framegrabs_2017 = [
(f'BED09/MBCCE_BED09_20160408_Watch/netcdf/9010000{n}.nc', '')
for n in range(4, 8)
] + [
('BED09/MBCCE_BED09_20160408_Event20170109/netcdf/90100196_full_traj.nc',
''),
('BED11/MBCCE_BED11_20161010_Event20170109/netcdf/B0100026_full_traj.nc',
''),
('BED11/MBCCE_BED11_20161010_Event20170109/netcdf/B0100027_full.nc',
''),
('BED11/MBCCE_BED11_20161010_Event20170109/netcdf/B0100028_full_traj.nc',
''),
##('BED00/Simulated/netcdf/BED00_cycle_rot_axes_200_202_trajectory.nc',
## ''),
('BED08/MBCCE_BED08_20161005_Event20161124/netcdf/80200014_decim_traj.nc',
'http://search.mbari.org/ARCHIVE/frameGrabs/Ventana/stills/2016/vnta3969/00_26_09_00.html'
),
('BED08/MBCCE_BED08_20161005_Event20161124/netcdf/80200014_full_traj.nc',
'http://search.mbari.org/ARCHIVE/frameGrabs/Ventana/stills/2016/vnta3969/00_26_09_00.html'
),
('BED08/MBCCE_BED08_20161005_Event20161124/netcdf/80200015_full_traj.nc',
'http://search.mbari.org/ARCHIVE/frameGrabs/Ventana/stills/2016/vnta3969/00_26_09_00.html'
),
('BED08/MBCCE_BED08_20161005_Event20161124/netcdf/80200016_decim_traj.nc',
'http://search.mbari.org/ARCHIVE/frameGrabs/Ventana/stills/2016/vnta3969/00_26_09_00.html'
),
('BED08/MBCCE_BED08_20161005_Event20161124/netcdf/80200016_full_traj.nc',
'http://search.mbari.org/ARCHIVE/frameGrabs/Ventana/stills/2016/vnta3969/00_26_09_00.html'
),
('BED08/MBCCE_BED08_20161005_Event20161124/netcdf/80200017_full_traj.nc',
'http://search.mbari.org/ARCHIVE/frameGrabs/Ventana/stills/2016/vnta3969/00_26_09_00.html'
),
('BED08/MBCCE_BED08_20161005_Event20161124/netcdf/80200019_full_traj.nc',
'http://search.mbari.org/ARCHIVE/frameGrabs/Ventana/stills/2016/vnta3969/00_26_09_00.html'
),
('BED08/MBCCE_BED08_20161005_Event20161124/netcdf/80200020_decim_traj.nc',
'http://search.mbari.org/ARCHIVE/frameGrabs/Ventana/stills/2016/vnta3969/00_26_09_00.html'
),
('BED08/MBCCE_BED08_20161005_Event20161124/netcdf/80200020_full_traj.nc',
'http://search.mbari.org/ARCHIVE/frameGrabs/Ventana/stills/2016/vnta3969/00_26_09_00.html'
),
('BED08/MBCCE_BED08_20161005_Event20170109/netcdf/80200034_decim_traj.nc',
'http://search.mbari.org/ARCHIVE/frameGrabs/Ventana/stills/2016/vnta3969/00_26_09_00.html'
),
('BED08/MBCCE_BED08_20161005_Event20170109/netcdf/80200039_full_traj.nc',
'http://search.mbari.org/ARCHIVE/frameGrabs/Ventana/stills/2016/vnta3969/00_26_09_00.html'
),
('BED08/MBCCE_BED08_20161005_Event20170203/netcdf/80200046_decim_traj.nc',
'http://search.mbari.org/ARCHIVE/frameGrabs/Ventana/stills/2016/vnta3969/00_26_09_00.html'
),
('BED08/MBCCE_BED08_20161005_Event20170218/netcdf/80200050_decim_traj.nc',
'http://search.mbari.org/ARCHIVE/frameGrabs/Ventana/stills/2016/vnta3969/00_26_09_00.html'
),
('BED08/MBCCE_BED08_20161005_Event20170218/netcdf/80200052_full_traj.nc',
'http://search.mbari.org/ARCHIVE/frameGrabs/Ventana/stills/2016/vnta3969/00_26_09_00.html'
),
('BED11/MBCCE_BED11_20161010_Event20161124/netcdf/B0100012_decim_traj.nc',
''),
('BED06/MBCCE_BED06_20160222_Event20170109/netcdf/60200218_decim_traj.nc',
''),
('BED06/MBCCE_BED06_20160222_Event20170109/netcdf/60200219_decim_traj.nc',
''),
('BED03/MBCCE_BED03_20161005_Event20170203/netcdf/30400034_full_traj.nc',
''),
('BED06/MBCCE_BED06_20160222_Event20170203/netcdf/60200236_decim_traj.nc',
''),
('BED06/MBCCE_BED06_20160222_Event20170218/netcdf/60200246_decim_traj.nc',
''),
('BED11/MBCCE_BED11_20161010_Event20170203/netcdf/B0100036_full_traj.nc',
''),
('BED11/MBCCE_BED11_20161010_Event20170203/netcdf/B0100037_full.nc',
''),
]
self.cl.bed_files_framegrabs = self.cl.bed_files_framegrabs_2015 + self.cl.bed_files_framegrabs_2016 + self.cl.bed_files_framegrabs_2017
self.cl.bed_files = [ffg[0] for ffg in self.cl.bed_files_framegrabs]
self.cl.bed_framegrabs = [
ffg[1] for ffg in self.cl.bed_files_framegrabs
]
self.cl.bed_platforms = [f.split('/')[0] for f in self.cl.bed_files]
# Execute just before loading BEDs data, as this delays the start of loading mooring data
##self.cl.bed_depths = np.round(self.cl.get_start_bed_depths(), 1)
# CCE event start and end times for loading mooring data
self.lores_event_times = lores_event_times
self.hires_event_times = hires_event_times
# CCE SIN (Seafloor Instrument Node) data - all parameters but the timeseriesprofile ADCP data
# There are 3 categories of loaded data:
# 1. 10-minute resolution entire timeseries of non-profile parameters
# 2. Low resolution profile data (ADCP) for a few days around each event
# 3. High resolution profile data (ADCP) for a several hours around each event
self.cl.ccesin_nominaldepth = 1836
self.cl.ccesin_base = 'http://dods.mbari.org/opendap/data/CCE_Processed/SIN/'
self.cl.ccesin_files = [
'20151013/CTDOBSTrans/MBCCE_SIN_CTDOBSTrans_20151013_timecorrected.nc',
'20151013/OX/MBCCE_SIN_OX_20151013_timecorrected.nc',
'20151013/FLNTU/MBCCE_SIN_FLNTU_20151013_timecorrected.nc',
'20151013/ADCP300/MBCCE_SIN_ADCP300_20151013.nc',
'20151013/ADCP600/MBCCE_SIN_ADCP600_20151013.nc',
'20151013/ADCP1200/MBCCE_SIN_ADCP1200_20151013.nc',
'20160417/CTDOBSTrans/MBCCE_SIN_CTDOBSTrans_20160417_timecorrected.nc',
'20160417/OX/MBCCE_SIN_OX_20160417_timecorrected.nc',
'20160417/FLNTU/MBCCE_SIN_FLNTU_20160417_timecorrected.nc',
'20161018/CTDOBSTrans/MBCCE_SIN_CTDOBSTrans_20161018_timecorrected.nc',
'20161018/OX/MBCCE_SIN_OX_20161018_timecorrected.nc',
'20161018/FLNTU/MBCCE_SIN_FLNTU_20161018_timecorrected.nc',
]
self.cl.ccesin_parms = [
'pressure', 'temperature', 'conductivity', 'turbidity',
'optical_backscatter', 'oxygen', 'saturation',
'optode_temperature', 'chlor', 'ntu1', 'ntu2', 'Hdg_1215',
'Ptch_1216', 'Roll_1217'
]
# CCE SIN (Seafloor Instrument Node) data - files and parameters to load for just the events:
# Just the timeseriesprofile ADCP data
self.cl.ccesin_nominaldepth_ev = self.cl.ccesin_nominaldepth
self.cl.ccesin_base_ev = self.cl.ccesin_base
self.cl.ccesin_files_ev = [
'20151013/ADCP300/MBCCE_SIN_ADCP300_20151013.nc',
'20151013/ADCP600/MBCCE_SIN_ADCP600_20151013.nc',
'20151013/ADCP1200/MBCCE_SIN_ADCP1200_20151013.nc',
]
self.cl.ccesin_parms_ev = ['u_1205', 'v_1206', 'w_1204', 'AGC_1202']
# Just the timeseries data for the highres period
self.cl.ccesin_files_ev_hires = [
'20151013/CTDOBSTrans/MBCCE_SIN_CTDOBSTrans_20151013_timecorrected.nc',
'20151013/OX/MBCCE_SIN_OX_20151013_timecorrected.nc',
'20151013/FLNTU/MBCCE_SIN_FLNTU_20151013_timecorrected.nc',
'20160417/CTDOBSTrans/MBCCE_SIN_CTDOBSTrans_20160417_timecorrected.nc',
'20160417/OX/MBCCE_SIN_OX_20160417_timecorrected.nc',
'20160417/FLNTU/MBCCE_SIN_FLNTU_20160417_timecorrected.nc',
'20161018/CTDOBSTrans/MBCCE_SIN_CTDOBSTrans_20161018_timecorrected.nc',
'20161018/OX/MBCCE_SIN_OX_20161018_timecorrected.nc',
'20161018/FLNTU/MBCCE_SIN_FLNTU_20161018_timecorrected.nc',
]
self.cl.ccesin_parms_ev_hires = [
'pressure', 'temperature', 'conductivity', 'turbidity',
'optical_backscatter', 'oxygen', 'saturation',
'optode_temperature', 'chlor', 'ntu1', 'ntu2', 'Hdg_1215',
'Ptch_1216', 'Roll_1217'
]
# MS1 ADCP data - timeseries data
self.cl.ccems1_nominal_depth = 225
self.cl.ccems1_base = 'http://dods.mbari.org/opendap/data/CCE_Archive/MS1/'
self.cl.ccems1_files = [
'20151006/ADCP300/MBCCE_MS1_ADCP300_20151006.nc',
'20151006/Aquadopp2000/MBCCE_MS1_Aquadopp2000_20151006.nc',
'20151006/CTOBSTrans9m/MBCCE_MS1_CTOBSTrans9m_20151006.nc',
'20151006/TD65m/MBCCE_MS1_TD65m_20151006.nc',
'20151006/TU35m/MBCCE_MS1_TU35m_20151006.nc',
'20151006/TU65m/MBCCE_MS1_TU65m_20151006.nc',
]
self.cl.ccems1_parms = [
'Hdg_1215',
'Ptch_1216',
'Roll_1217',
'P_1',
'T_1211',
'T_28',
'S_41',
'ST_70',
'tran_4010',
'ATTN_55',
'NEP_56',
'Trb_980',
]
# MS1 ADCP data - timeseriesprofile (ADCP) data
self.cl.ccems1_nominal_depth_ev = self.cl.ccems1_nominal_depth
self.cl.ccems1_base_ev = self.cl.ccems1_base
self.cl.ccems1_files_ev = [
'20151006/ADCP300/MBCCE_MS1_ADCP300_20151006.nc',
'20151006/Aquadopp2000/MBCCE_MS1_Aquadopp2000_20151006.nc',
]
self.cl.ccems1_parms_ev = ['u_1205', 'v_1206', 'w_1204', 'AGC_1202']
# MS2 ADCP data - timeseries data
self.cl.ccems2_nominal_depth = 462
self.cl.ccems2_base = 'http://dods.mbari.org/opendap/data/CCE_Archive/MS2/'
self.cl.ccems2_files = [
'20151005/ADCP300/MBCCE_MS2_ADCP300_20151005.nc',
'20151005/CTD9m/MBCCE_MS2_CTD9m_20151005.nc',
'20151005/TU9m/MBCCE_MS2_TU9m_20151005.nc',
]
self.cl.ccems2_parms = [
'Hdg_1215',
'Ptch_1216',
'Roll_1217',
'D_3',
'P_1',
'T_28',
'S_41',
'NEP_56',
'Trb_980',
]
# MS2 ADCP data - timeseriesprofile (ADCP) data
self.cl.ccems2_nominal_depth_ev = self.cl.ccems2_nominal_depth
self.cl.ccems2_base_ev = self.cl.ccems2_base
self.cl.ccems2_files_ev = [
'20151005/ADCP300/MBCCE_MS2_ADCP300_20151005.nc',
]
self.cl.ccems2_parms_ev = ['u_1205', 'v_1206', 'w_1204', 'AGC_1202']
# MS3 ADCP and CTD data - timeseries data
self.cl.ccems3_nominal_depth = 764
self.cl.ccems3_base = 'http://dods.mbari.org/opendap/data/CCE_Archive/MS3/'
self.cl.ccems3_files = [
'20151005/ADCP300/MBCCE_MS3_ADCP300_20151005.nc',
'20151005/Aquadopp2000/MBCCE_MS3_Aquadopp2000_20151005.nc',
'20151005/CT9m/MBCCE_MS3_CT9m_20151005.nc',
'20151005/TU9m/MBCCE_MS3_TU9m_20151005.nc',
]
self.cl.ccems3_parms = [
'Hdg_1215',
'Ptch_1216',
'Roll_1217',
'P_1',
'T_1211',
'NEP1_56',
'T_28',
'S_41',
'ST_70',
'tran_4010',
'ATTN_55',
]
# MS3 ADCP data - timeseriesprofile (ADCP) data
self.cl.ccems3_nominal_depth_ev = self.cl.ccems3_nominal_depth
self.cl.ccems3_base_ev = self.cl.ccems3_base
self.cl.ccems3_files_ev = [
'20151005/ADCP300/MBCCE_MS3_ADCP300_20151005.nc',
'20151005/Aquadopp2000/MBCCE_MS3_Aquadopp2000_20151005.nc',
]
self.cl.ccems3_parms_ev = ['u_1205', 'v_1206', 'w_1204', 'AGC_1202']
# MS4 ADCP - 20151005 data files are corrupted
##self.cl.ccems4_nominal_depth = 462
##self.cl.ccems4_base = 'http://dods.mbari.org/opendap/data/CCE_Archive/MS4...'
##self.cl.ccems4_files = [ '' ]
##self.cl.ccems4_parms = [ 'u_1205', 'v_1206', 'w_1204', 'AGC_1202', ]
##self.cl.ccems4_parms = [ 'u_1205', 'v_1206', 'w_1204', 'AGC_1202', 'Hdg_1215', 'Ptch_1216', 'Roll_1217']
# MS5 ADCP data - timeseries data
self.cl.ccems5_nominal_depth = 1315
self.cl.ccems5_base = 'http://dods.mbari.org/opendap/data/CCE_Archive/MS5/'
self.cl.ccems5_files = [
'20151020/ADCP300/MBCCE_MS5_ADCP300_20151020.nc',
]
self.cl.ccems5_parms = ['Hdg_1215', 'Ptch_1216', 'Roll_1217']
# MS3 ADCP data - timeseriesprofile (ADCP) data
self.cl.ccems5_nominal_depth_ev = self.cl.ccems5_nominal_depth
self.cl.ccems5_base_ev = self.cl.ccems5_base
self.cl.ccems5_files_ev = [
'20151020/ADCP300/MBCCE_MS5_ADCP300_20151020.nc',
]
self.cl.ccems5_parms_ev = ['u_1205', 'v_1206', 'w_1204', 'AGC_1202']
# Full-deployment files, exatracted from SSDS with stride of 60
##self.cl.ccesin_base = 'http://dods.mbari.org/opendap/data/ssdsdata/deployments/ccesin2015/201510/'
##self.cl.ccesin_files = [
## 'ccesin2015_aanderaaoxy_20151013.nc',
## 'ccesin2015_adcp1825_20151013.nc',
## 'ccesin2015_adcp1827_20151013.nc',
## 'ccesin2015_adcp1828_20151013.nc',
## 'ccesin2015_ecotriplet_20151013.nc',
## 'ccesin2015_sbe16_20151013.nc',
## ]
##self.cl.ccesin_base = 'http://dods.mbari.org/opendap/data/ssdsdata/deployments/ccesin20160115/201601/'
##self.cl.ccesin_files = [
## ##'ccesin20160115_aanderaaoxy_20160115.nc',
## 'ccesin20160115_adcp1825_20160115.nc',
## 'ccesin20160115_adcp1827_20160115.nc',
## 'ccesin20160115_adcp1828_20160115.nc',
## ##'ccesin20160115_ecotriplet_20160115.nc',
## ##'ccesin20160115_sbe16_20160115.nc',
## ]
##self.cl.ccesin_parms = [
## 'u_component_uncorrected', 'v_component_uncorrected',
## 'echo_intensity_beam1',
## #'echo_intensity_beam2', 'echo_intensity_beam3', 'echo_intensity_beam4',
## #'std_head', 'std_pitch', 'std_roll', 'xdcr_temperature',
## ##'Pressure', 'Salinity', 'Temperature',
## ##'AirSaturation', 'Oxygen',
## ##'Chlor', 'NTU1', 'NTU2',
## ]
# Execute the load for trajectory representation
self.cl.process_command_line()
cl = CCELoader('stoqs_cce2015', 'Coordinated Canyon Experiment',
description = 'Coordinated Canyon Experiment - Measuring turbidity flows in Monterey Submarine Canyon',
x3dTerrains = {
'http://stoqs.mbari.org/x3d/MontereyCanyonBeds_1m+5m_1x_src/MontereyCanyonBeds_1m+5m_1x_src_scene.x3d': {
'name': 'MontereyCanyonBeds_1m+5m_1x',
'position': '2232.80938 10346.25515 3543.76722',
'orientation': '-0.98394 0.16804 -0.06017 1.25033',
'centerOfRotation': '0 0 0',
'VerticalExaggeration': '1',
'geoOrigin': '36.80, -121.87, -400',
'speed': '1.0',
'zNear': '100.0',
'zFar': '30000.0',
'selected': '1'
},
'http://stoqs.mbari.org/x3d/Monterey25_1x/Monterey25_1x_src_scene.x3d': {
'name': 'Monterey25_1x',
'position': '-32985.28634 88026.90417 22334.02600',
'orientation': '-0.99875 -0.04772 0.01482 1.31683',
'centerOfRotation': '-20564.015827789044 -1956.065669754069 14112.954469753739',
'VerticalExaggeration': '1',
'geoOrigin': '36.80, -121.87, -400',
'speed': '1.0',
'zNear': '-1',
'zFar': '-1',
},
},
# Do not check in .grd files to the repository, keep them in the loaders directory
grdTerrain=os.path.join(parent_dir, 'MontereyCanyonBeds_1m+5m.grd'),
##grdTerrain=os.path.join(parent_dir, 'Monterey25.grd'),
)
def __init__(self, db_alias='stoqs_cce2015', campaign_name='Coordinated Canyon Experiment'):
self.cl = CCELoader(db_alias, campaign_name,
description = 'Coordinated Canyon Experiment - Measuring turbidity flows in Monterey Submarine Canyon',
x3dTerrains = {
'https://stoqs.mbari.org/x3d/MontereyCanyonBeds_1m+5m_1x_src/MontereyCanyonBeds_1m+5m_1x_src_scene.x3d': {
'name': 'MontereyCanyonBeds_1m+5m_1x',
'position': '2232.80938 10346.25515 3543.76722',
'orientation': '-0.98394 0.16804 -0.06017 1.25033',
'centerOfRotation': '0 0 0',
'VerticalExaggeration': '1',
'geoOrigin': '36.80, -121.87, -400',
'speed': '1.0',
'zNear': '100.0',
'zFar': '30000.0',
'selected': '1'
},
'https://stoqs.mbari.org/x3d/Monterey25_1x/Monterey25_1x_src_scene.x3d': {
'name': 'Monterey25_1x',
'position': '-32985.28634 88026.90417 22334.02600',
'orientation': '-0.99875 -0.04772 0.01482 1.31683',
'centerOfRotation': '-20564.015827789044 -1956.065669754069 14112.954469753739',
'VerticalExaggeration': '1',
'geoOrigin': '36.80, -121.87, -400',
'speed': '1.0',
'zNear': '-1',
'zFar': '-1',
},
},
# Do not check in .grd files to the repository, keep them in the loaders directory
grdTerrain=os.path.join(parent_dir, 'MontereyCanyonBeds_1m+5m.grd'),
##grdTerrain=os.path.join(parent_dir, 'Monterey25.grd'),
)
# Base OPeNDAP server
self.cl.bed_base = 'http://dods.mbari.org/opendap/data/CCE_Processed/BEDs/'
# Copied from ProjectLibrary to BEDs SVN working dir for netCDF conversion, and then copied to elvis.
# See BEDs/BEDs/Visualization/py/makeBEDNetCDF_CCE.sh
self.cl.bed_parms = ['XA', 'YA', 'ZA', 'A', 'XR', 'YR', 'ZR', 'ROT_RATE', 'ROT_COUNT', 'P', 'P_ADJUSTED',
'P_RATE', 'P_SPLINE', 'P_SPLINE_RATE', 'ROT_DIST', 'IMPLIED_VELOCITY', 'BED_DEPTH_CSI',
'BED_DEPTH', 'BED_DEPTH_LI', 'DIST_TOPO', 'TUMBLE_RATE', 'TUMBLE_COUNT', 'TIDE',
'ROT_X', 'ROT_Y', 'ROT_Z', 'AXIS_X', 'AXIS_Y', 'AXIS_Z', 'ANGLE']
# Several BED files: 30200078 to 3020080
# bed_files, bed_platforms, bed_depths must have same number of items; they are zipped together in the load
##self.cl.bed_files = [(f'CanyonEvents/BED3/20151001_20160115/{n}.nc') for n in range(30200078, 30200081)]
##self.cl.bed_platforms = ['BED03'] * len(self.cl.bed_files)
##self.cl.bed_depths = [201] * len(self.cl.bed_files)
# Just the event files for the CCE
self.cl.bed_files_framegrabs_2015 = [
('BED04/MBCCE_BED04_20151004_Event20151201/netcdf/40100037_full_traj.nc',
'http://search.mbari.org/ARCHIVE/frameGrabs/Ventana/stills/2015/vnta3872/00_17_50_24.html'),
('BED05/MBCCE_BED05_20151027_Event20151201/netcdf/50200024_decim_traj.nc',
'http://search.mbari.org/ARCHIVE/frameGrabs/Ventana/stills/2015/vnta3873/00_29_56_03.html'),
]
self.cl.bed_files_framegrabs_2016 = [
('BED03/20151001_20160115/netcdf/30200078_full_traj.nc',
'http://search.mbari.org/ARCHIVE/frameGrabs/Ventana/stills/2015/vnta3874/00_21_23_28.html'),
('BED06/20151001_20160115/netcdf/60100068_full_traj.nc',
'http://search.mbari.org/ARCHIVE/frameGrabs/Ventana/stills/2015/vnta3870/00_15_38_23.html'),
('BED03/MBCCE_BED03_20160212_Event20160217/netcdf/30300004_decim_traj.nc',
''),
('BED05/MBCCE_BED05_20151027_Event20160115/netcdf/50200054_decim_traj.nc',
''),
('BED05/MBCCE_BED05_20151027_Event20160115/netcdf/50200055_decim_traj.nc',
''),
('BED05/MBCCE_BED05_20151027_Event20160115/netcdf/50200056_decim_traj.nc',
''),
('BED05/MBCCE_BED05_20151027_Event20160115/netcdf/50200057_decim_traj.nc',
''),
('BED03/MBCCE_BED03_20160212_Event20160306/netcdf/30300016_decim_traj.nc',
''),
('BED06/MBCCE_BED06_20160222_Event20160306/netcdf/60200011_decim_traj.nc',
''),
('BED06/MBCCE_BED06_20160222_Event20160306/netcdf/60200012_decim_traj.nc',
''),
('BED06/MBCCE_BED06_20160222_Event20160901/netcdf/60200130_decim_traj.nc',
''),
('BED09/MBCCE_BED09_20160408_Event20160901/netcdf/90100096_decim_traj.nc',
'http://search.mbari.org/ARCHIVE/frameGrabs/Ventana/stills/2016/vnta3922/02_55_51_27.html'),
('BED10/MBCCE_BED10_20160408_Event20160901/netcdf/A0100096_decim_traj.nc',
'http://search.mbari.org/ARCHIVE/frameGrabs/Ventana/stills/2016/vnta3921/02_05_37_16.html'),
# Uncomment to test 3D replay of BED motion - it should rotate only around the X-Axis
##('BED00/Simulated/netcdf/BED00_SIM_rolling_trajectory.nc',
## ''),
] + [
(f'BED09/MBCCE_BED09_20160408_Event20161124/netcdf/901001{n}_full_traj.nc', '') for n in (
list(range(56, 63)) + list(range(64, 65)))
] + [
('BED09/MBCCE_BED09_20160408_Event20161124/netcdf/90100165_full.nc',
''),
('BED03/MBCCE_BED03_20161005_Event20161124/netcdf/30400015_decim_traj.nc',
''),
('BED10/MBCCE_BED10_20160408_Event20161124/netcdf/A0100154_decim_traj.nc',
''),
('BED04/MBCCE_BED04_20151004_Event20161124/netcdf/40200014_decim_traj.nc',
''),
]
self.cl.bed_files_framegrabs_2017 = [
(f'BED09/MBCCE_BED09_20160408_Watch/netcdf/9010000{n}.nc', '') for n in range(4, 8)
] + [
('BED09/MBCCE_BED09_20160408_Event20170109/netcdf/90100196_full_traj.nc',
''),
('BED11/MBCCE_BED11_20161010_Event20170109/netcdf/B0100026_full_traj.nc',
''),
('BED11/MBCCE_BED11_20161010_Event20170109/netcdf/B0100027_full.nc',
''),
('BED11/MBCCE_BED11_20161010_Event20170109/netcdf/B0100028_full_traj.nc',
''),
('BED00/Simulated/netcdf/BED00_cycle_rot_axes_200_202_trajectory.nc',
''),
('BED08/MBCCE_BED08_20161005_Event20161124/netcdf/80200014_decim_traj.nc',
'http://search.mbari.org/ARCHIVE/frameGrabs/Ventana/stills/2016/vnta3969/00_26_09_00.html'),
('BED08/MBCCE_BED08_20161005_Event20161124/netcdf/80200014_full_traj.nc',
'http://search.mbari.org/ARCHIVE/frameGrabs/Ventana/stills/2016/vnta3969/00_26_09_00.html'),
('BED08/MBCCE_BED08_20161005_Event20161124/netcdf/80200015_full_traj.nc',
'http://search.mbari.org/ARCHIVE/frameGrabs/Ventana/stills/2016/vnta3969/00_26_09_00.html'),
('BED08/MBCCE_BED08_20161005_Event20161124/netcdf/80200016_decim_traj.nc',
'http://search.mbari.org/ARCHIVE/frameGrabs/Ventana/stills/2016/vnta3969/00_26_09_00.html'),
('BED08/MBCCE_BED08_20161005_Event20161124/netcdf/80200016_full_traj.nc',
'http://search.mbari.org/ARCHIVE/frameGrabs/Ventana/stills/2016/vnta3969/00_26_09_00.html'),
('BED08/MBCCE_BED08_20161005_Event20161124/netcdf/80200017_full_traj.nc',
'http://search.mbari.org/ARCHIVE/frameGrabs/Ventana/stills/2016/vnta3969/00_26_09_00.html'),
('BED08/MBCCE_BED08_20161005_Event20161124/netcdf/80200019_full_traj.nc',
'http://search.mbari.org/ARCHIVE/frameGrabs/Ventana/stills/2016/vnta3969/00_26_09_00.html'),
('BED08/MBCCE_BED08_20161005_Event20161124/netcdf/80200020_decim_traj.nc',
'http://search.mbari.org/ARCHIVE/frameGrabs/Ventana/stills/2016/vnta3969/00_26_09_00.html'),
('BED08/MBCCE_BED08_20161005_Event20161124/netcdf/80200020_full_traj.nc',
'http://search.mbari.org/ARCHIVE/frameGrabs/Ventana/stills/2016/vnta3969/00_26_09_00.html'),
('BED08/MBCCE_BED08_20161005_Event20170109/netcdf/80200034_decim_traj.nc',
'http://search.mbari.org/ARCHIVE/frameGrabs/Ventana/stills/2016/vnta3969/00_26_09_00.html'),
('BED08/MBCCE_BED08_20161005_Event20170109/netcdf/80200039_full_traj.nc',
'http://search.mbari.org/ARCHIVE/frameGrabs/Ventana/stills/2016/vnta3969/00_26_09_00.html'),
('BED08/MBCCE_BED08_20161005_Event20170203/netcdf/80200046_decim_traj.nc',
'http://search.mbari.org/ARCHIVE/frameGrabs/Ventana/stills/2016/vnta3969/00_26_09_00.html'),
('BED08/MBCCE_BED08_20161005_Event20170218/netcdf/80200050_decim_traj.nc',
'http://search.mbari.org/ARCHIVE/frameGrabs/Ventana/stills/2016/vnta3969/00_26_09_00.html'),
('BED08/MBCCE_BED08_20161005_Event20170218/netcdf/80200052_full_traj.nc',
'http://search.mbari.org/ARCHIVE/frameGrabs/Ventana/stills/2016/vnta3969/00_26_09_00.html'),
('BED11/MBCCE_BED11_20161010_Event20161124/netcdf/B0100012_decim_traj.nc',
''),
('BED06/MBCCE_BED06_20160222_Event20170109/netcdf/60200218_decim_traj.nc',
''),
('BED06/MBCCE_BED06_20160222_Event20170109/netcdf/60200219_decim_traj.nc',
''),
('BED03/MBCCE_BED03_20161005_Event20170203/netcdf/30400034_full_traj.nc',
''),
('BED06/MBCCE_BED06_20160222_Event20170203/netcdf/60200236_decim_traj.nc',
''),
('BED06/MBCCE_BED06_20160222_Event20170218/netcdf/60200246_decim_traj.nc',
''),
('BED11/MBCCE_BED11_20161010_Event20170203/netcdf/B0100036_full_traj.nc',
''),
('BED11/MBCCE_BED11_20161010_Event20170203/netcdf/B0100037_full.nc',
''),
]
self.cl.bed_files_framegrabs = self.cl.bed_files_framegrabs_2015 + self.cl.bed_files_framegrabs_2016 + self.cl.bed_files_framegrabs_2017
self.cl.bed_files = [ffg[0] for ffg in self.cl.bed_files_framegrabs]
self.cl.bed_framegrabs = [ffg[1] for ffg in self.cl.bed_files_framegrabs]
self.cl.bed_platforms = [f.split('/')[0] for f in self.cl.bed_files ]
# Execute just before loading BEDs data, as this delays the start of loading mooring data
##self.cl.bed_depths = np.round(self.cl.get_start_bed_depths(), 1)
# CCE event start and end times for loading mooring data
self.lores_event_times = lores_event_times
self.hires_event_times = hires_event_times
# CCE SIN (Seafloor Instrument Node) data - all parameters but the timeseriesprofile ADCP data
# There are 3 categories of loaded data:
# 1. 10-minute resolution entire timeseries of non-profile parameters
# 2. Low resolution profile data (ADCP) for a few days around each event
# 3. High resolution profile data (ADCP) for a several hours around each event
self.cl.ccesin_nominaldepth = 1836
self.cl.ccesin_base = 'http://dods.mbari.org/opendap/data/CCE_Processed/SIN/'
self.cl.ccesin_files = [
'20151013/CTDOBSTrans/MBCCE_SIN_CTDOBSTrans_20151013_timecorrected.nc',
'20151013/OX/MBCCE_SIN_OX_20151013_timecorrected.nc',
'20151013/FLNTU/MBCCE_SIN_FLNTU_20151013_timecorrected.nc',
'20151013/ADCP300/MBCCE_SIN_ADCP300_20151013.nc',
'20151013/ADCP600/MBCCE_SIN_ADCP600_20151013.nc',
'20151013/ADCP1200/MBCCE_SIN_ADCP1200_20151013.nc',
'20160417/CTDOBSTrans/MBCCE_SIN_CTDOBSTrans_20160417_timecorrected.nc',
'20160417/OX/MBCCE_SIN_OX_20160417_timecorrected.nc',
'20160417/FLNTU/MBCCE_SIN_FLNTU_20160417_timecorrected.nc',
'20161018/CTDOBSTrans/MBCCE_SIN_CTDOBSTrans_20161018_timecorrected.nc',
'20161018/OX/MBCCE_SIN_OX_20161018_timecorrected.nc',
'20161018/FLNTU/MBCCE_SIN_FLNTU_20161018_timecorrected.nc',
]
self.cl.ccesin_parms = [ 'pressure', 'temperature', 'conductivity', 'turbidity', 'optical_backscatter',
'oxygen', 'saturation', 'optode_temperature',
'chlor', 'ntu1', 'ntu2',
'Hdg_1215', 'Ptch_1216', 'Roll_1217']
# CCE SIN (Seafloor Instrument Node) data - files and parameters to load for just the events:
# Just the timeseriesprofile ADCP data
self.cl.ccesin_nominaldepth_ev = self.cl.ccesin_nominaldepth
self.cl.ccesin_base_ev = self.cl.ccesin_base
self.cl.ccesin_files_ev = [
'20151013/ADCP300/MBCCE_SIN_ADCP300_20151013.nc',
'20151013/ADCP600/MBCCE_SIN_ADCP600_20151013.nc',
'20151013/ADCP1200/MBCCE_SIN_ADCP1200_20151013.nc',
]
self.cl.ccesin_parms_ev = [ 'u_1205', 'v_1206', 'w_1204', 'AGC_1202' ]
# Just the timeseries data for the highres period
self.cl.ccesin_files_ev_hires = [
'20151013/CTDOBSTrans/MBCCE_SIN_CTDOBSTrans_20151013_timecorrected.nc',
'20151013/OX/MBCCE_SIN_OX_20151013_timecorrected.nc',
'20151013/FLNTU/MBCCE_SIN_FLNTU_20151013_timecorrected.nc',
'20160417/CTDOBSTrans/MBCCE_SIN_CTDOBSTrans_20160417_timecorrected.nc',
'20160417/OX/MBCCE_SIN_OX_20160417_timecorrected.nc',
'20160417/FLNTU/MBCCE_SIN_FLNTU_20160417_timecorrected.nc',
'20161018/CTDOBSTrans/MBCCE_SIN_CTDOBSTrans_20161018_timecorrected.nc',
'20161018/OX/MBCCE_SIN_OX_20161018_timecorrected.nc',
'20161018/FLNTU/MBCCE_SIN_FLNTU_20161018_timecorrected.nc',
]
self.cl.ccesin_parms_ev_hires = [ 'pressure', 'temperature', 'conductivity', 'turbidity', 'optical_backscatter',
'oxygen', 'saturation', 'optode_temperature',
'chlor', 'ntu1', 'ntu2',
'Hdg_1215', 'Ptch_1216', 'Roll_1217']
# MS1 ADCP data - timeseries data
self.cl.ccems1_nominal_depth = 225
self.cl.ccems1_base = 'http://dods.mbari.org/opendap/data/CCE_Archive/MS1/'
self.cl.ccems1_files = [
'20151006/ADCP300/MBCCE_MS1_ADCP300_20151006.nc',
'20151006/Aquadopp2000/MBCCE_MS1_Aquadopp2000_20151006.nc',
'20151006/CTOBSTrans9m/MBCCE_MS1_CTOBSTrans9m_20151006.nc',
'20151006/TD65m/MBCCE_MS1_TD65m_20151006.nc',
'20151006/TU35m/MBCCE_MS1_TU35m_20151006.nc',
'20151006/TU65m/MBCCE_MS1_TU65m_20151006.nc',
]
self.cl.ccems1_parms = [
'Hdg_1215', 'Ptch_1216', 'Roll_1217',
'P_1', 'T_1211',
'T_28', 'S_41', 'ST_70', 'tran_4010', 'ATTN_55', 'NEP_56', 'Trb_980',
]
# MS1 ADCP data - timeseriesprofile (ADCP) data
self.cl.ccems1_nominal_depth_ev = self.cl.ccems1_nominal_depth
self.cl.ccems1_base_ev = self.cl.ccems1_base
self.cl.ccems1_files_ev = [
'20151006/ADCP300/MBCCE_MS1_ADCP300_20151006.nc',
'20151006/Aquadopp2000/MBCCE_MS1_Aquadopp2000_20151006.nc',
]
self.cl.ccems1_parms_ev = [ 'u_1205', 'v_1206', 'w_1204', 'AGC_1202' ]
# MS2 ADCP data - timeseries data
self.cl.ccems2_nominal_depth = 462
self.cl.ccems2_base = 'http://dods.mbari.org/opendap/data/CCE_Archive/MS2/'
self.cl.ccems2_files = [
'20151005/ADCP300/MBCCE_MS2_ADCP300_20151005.nc',
'20151005/CTD9m/MBCCE_MS2_CTD9m_20151005.nc',
'20151005/TU9m/MBCCE_MS2_TU9m_20151005.nc',
]
self.cl.ccems2_parms = [
'Hdg_1215', 'Ptch_1216', 'Roll_1217',
'D_3', 'P_1', 'T_28', 'S_41',
'NEP_56', 'Trb_980',
]
# MS2 ADCP data - timeseriesprofile (ADCP) data
self.cl.ccems2_nominal_depth_ev = self.cl.ccems2_nominal_depth
self.cl.ccems2_base_ev = self.cl.ccems2_base
self.cl.ccems2_files_ev = [
'20151005/ADCP300/MBCCE_MS2_ADCP300_20151005.nc',
]
self.cl.ccems2_parms_ev = [ 'u_1205', 'v_1206', 'w_1204', 'AGC_1202' ]
# MS3 ADCP and CTD data - timeseries data
self.cl.ccems3_nominal_depth = 764
self.cl.ccems3_base = 'http://dods.mbari.org/opendap/data/CCE_Archive/MS3/'
self.cl.ccems3_files = [
'20151005/ADCP300/MBCCE_MS3_ADCP300_20151005.nc',
'20151005/Aquadopp2000/MBCCE_MS3_Aquadopp2000_20151005.nc',
'20151005/CT9m/MBCCE_MS3_CT9m_20151005.nc',
'20151005/TU9m/MBCCE_MS3_TU9m_20151005.nc',
]
self.cl.ccems3_parms = [
'Hdg_1215', 'Ptch_1216', 'Roll_1217',
'P_1', 'T_1211', 'NEP1_56',
'T_28', 'S_41', 'ST_70',
'tran_4010', 'ATTN_55',
]
# MS3 ADCP data - timeseriesprofile (ADCP) data
self.cl.ccems3_nominal_depth_ev = self.cl.ccems3_nominal_depth
self.cl.ccems3_base_ev = self.cl.ccems3_base
self.cl.ccems3_files_ev = [
'20151005/ADCP300/MBCCE_MS3_ADCP300_20151005.nc',
'20151005/Aquadopp2000/MBCCE_MS3_Aquadopp2000_20151005.nc',
]
self.cl.ccems3_parms_ev = [ 'u_1205', 'v_1206', 'w_1204', 'AGC_1202' ]
# MS4 ADCP - 20151005 data files are corrupted
##self.cl.ccems4_nominal_depth = 462
##self.cl.ccems4_base = 'http://dods.mbari.org/opendap/data/CCE_Archive/MS4...'
##self.cl.ccems4_files = [ '' ]
##self.cl.ccems4_parms = [ 'u_1205', 'v_1206', 'w_1204', 'AGC_1202', ]
##self.cl.ccems4_parms = [ 'u_1205', 'v_1206', 'w_1204', 'AGC_1202', 'Hdg_1215', 'Ptch_1216', 'Roll_1217']
# MS5 ADCP data - timeseries data
self.cl.ccems5_nominal_depth = 1315
self.cl.ccems5_base = 'http://dods.mbari.org/opendap/data/CCE_Archive/MS5/'
self.cl.ccems5_files = [
'20151020/ADCP300/MBCCE_MS5_ADCP300_20151020.nc',
]
self.cl.ccems5_parms = [ 'Hdg_1215', 'Ptch_1216', 'Roll_1217']
# MS3 ADCP data - timeseriesprofile (ADCP) data
self.cl.ccems5_nominal_depth_ev = self.cl.ccems5_nominal_depth
self.cl.ccems5_base_ev = self.cl.ccems5_base
self.cl.ccems5_files_ev = [
'20151020/ADCP300/MBCCE_MS5_ADCP300_20151020.nc',
]
self.cl.ccems5_parms_ev = [ 'u_1205', 'v_1206', 'w_1204', 'AGC_1202' ]
# Full-deployment files, exatracted from SSDS with stride of 60
##self.cl.ccesin_base = 'http://dods.mbari.org/opendap/data/ssdsdata/deployments/ccesin2015/201510/'
##self.cl.ccesin_files = [
## 'ccesin2015_aanderaaoxy_20151013.nc',
## 'ccesin2015_adcp1825_20151013.nc',
## 'ccesin2015_adcp1827_20151013.nc',
## 'ccesin2015_adcp1828_20151013.nc',
## 'ccesin2015_ecotriplet_20151013.nc',
## 'ccesin2015_sbe16_20151013.nc',
## ]
##self.cl.ccesin_base = 'http://dods.mbari.org/opendap/data/ssdsdata/deployments/ccesin20160115/201601/'
##self.cl.ccesin_files = [
## ##'ccesin20160115_aanderaaoxy_20160115.nc',
## 'ccesin20160115_adcp1825_20160115.nc',
## 'ccesin20160115_adcp1827_20160115.nc',
## 'ccesin20160115_adcp1828_20160115.nc',
## ##'ccesin20160115_ecotriplet_20160115.nc',
## ##'ccesin20160115_sbe16_20160115.nc',
## ]
##self.cl.ccesin_parms = [
## 'u_component_uncorrected', 'v_component_uncorrected',
## 'echo_intensity_beam1',
## #'echo_intensity_beam2', 'echo_intensity_beam3', 'echo_intensity_beam4',
## #'std_head', 'std_pitch', 'std_roll', 'xdcr_temperature',
## ##'Pressure', 'Salinity', 'Temperature',
## ##'AirSaturation', 'Oxygen',
## ##'Chlor', 'NTU1', 'NTU2',
## ]
# Execute the load for trajectory representation
self.cl.process_command_line()
cl = CCELoader('stoqs_cce2015', 'Coordinated Canyon Experiment',
description = 'Coordinated Canyon Experiment - Measuring turbidity flows in Monterey Submarine Canyon',
x3dTerrains = {
'http://stoqs.mbari.org/x3d/MontereyCanyonBeds_1m+5m_1x_src/MontereyCanyonBeds_1m+5m_1x_src_scene.x3d': {
'name': 'MontereyCanyonBeds_1m+5m_1x',
'position': '2232.80938 10346.25515 3543.76722',
'orientation': '-0.98394 0.16804 -0.06017 1.25033',
'centerOfRotation': '0 0 0',
'VerticalExaggeration': '1',
'geoOrigin': '36.80, -121.87, -400',
'speed': '1.0',
'zNear': '100.0',
'zFar': '30000.0',
'selected': '1'
},
'http://stoqs.mbari.org/x3d/Monterey25_1x/Monterey25_1x_src_scene.x3d': {
'name': 'Monterey25_1x',
'position': '-32985.28634 88026.90417 22334.02600',
'orientation': '-0.99875 -0.04772 0.01482 1.31683',
'centerOfRotation': '-20564.015827789044 -1956.065669754069 14112.954469753739',
'VerticalExaggeration': '1',
'geoOrigin': '36.80, -121.87, -400',
'speed': '1.0',
'zNear': '-1',
'zFar': '-1',
},
},
# Do not check in .grd files to the repository, keep them in the loaders directory
grdTerrain=os.path.join(parent_dir, 'MontereyCanyonBeds_1m+5m.grd'),
##grdTerrain=os.path.join(parent_dir, 'Monterey25.grd'),
)
cl = CCELoader('stoqs_cce2015', 'Coordinated Canyon Experiment',
description = 'Coordinated Canyon Experiment - Measuring turbidity flows in Monterey Submarine Canyon',
x3dTerrains = {
'http://stoqs.mbari.org/x3d/MontereyCanyonBeds_1m+5m_1x_src/MontereyCanyonBeds_1m+5m_1x_src_scene.x3d': {
'name': 'MontereyCanyonBeds_1m+5m_1x',
'position': '2232.80938 10346.25515 3543.76722',
'orientation': '-0.98394 0.16804 -0.06017 1.25033',
'centerOfRotation': '0 0 0',
'VerticalExaggeration': '1',
'geoOrigin': '36.80, -121.87, -400',
'speed': '1.0',
'zNear': '100.0',
'zFar': '30000.0',
'selected': '1'
},
'http://stoqs.mbari.org/x3d/Monterey25_1x/Monterey25_1x_src_scene.x3d': {
'name': 'Monterey25_1x',
'position': '-32985.28634 88026.90417 22334.02600',
'orientation': '-0.99875 -0.04772 0.01482 1.31683',
'centerOfRotation': '-20564.015827789044 -1956.065669754069 14112.954469753739',
'VerticalExaggeration': '1',
'geoOrigin': '36.80, -121.87, -400',
'speed': '1.0',
'zNear': '-1',
'zFar': '-1',
},
},
# Do not check in .grd files to the repository, keep them in the loaders directory
##grdTerrain=os.path.join(parent_dir, 'MontereyCanyonBeds_1m+5m.grd'),
grdTerrain=os.path.join(parent_dir, 'Monterey25.grd'),
)
import sys
from datetime import datetime
parent_dir = os.path.join(os.path.dirname(__file__), "../")
sys.path.insert(0, parent_dir) # settings.py is one dir up
from CCE import CCELoader
cl = CCELoader('stoqs_cce2015', 'Coordinated Canyon Experiment',
description = 'Coordinated Canyon Experiment - Measuring turbidity flows in Monterey Submarine Canyon',
x3dTerrains = {
'http://stoqs.mbari.org/terrain/MontereyCanyonBeds_1m+5m_1x_src/MontereyCanyonBeds_1m+5m_1x_src_scene.x3d': {
'position': '2232.80938 10346.25515 3543.76722',
'orientation': '-0.98394 0.16804 -0.06017 1.25033',
'centerOfRotation': '0 0 0',
'VerticalExaggeration': '1',
'geoOrigin': '36.80, -121.87, -400',
'speed': '1.0',
'zNear': '100.0',
'zFar': '30000.0',
},
},
# Do not check in .grd files to the repository, keep them in the loaders directory
grdTerrain=os.path.join(parent_dir, 'MontereyCanyonBeds_1m+5m.grd'),
)
# Base OPeNDAP server
cl.bed_base = 'http://elvis64.shore.mbari.org/opendap/data/CCE_Processed/BEDs/'
# Copied from ProjectLibrary to BEDs SVN working dir for netCDF conversion, and then copied to elvis.
# See BEDs/BEDs/Visualization/py/makeBEDNetCDF_CCE.sh
def __init__(self,
db_alias='stoqs_bed_viz',
campaign_name='BED rotation visualization'):
self.cl = CCELoader(
db_alias,
campaign_name,
description=
'Bentic Event Detector quaternion data visualization database',
x3dTerrains={
'https://stoqs.mbari.org/x3d/MontereyCanyonBeds_1m+5m_1x_src/MontereyCanyonBeds_1m+5m_1x_src_scene.x3d':
{
'name': 'MontereyCanyonBeds_1m+5m_1x',
'position': '2232.80938 10346.25515 3543.76722',
'orientation': '-0.98394 0.16804 -0.06017 1.25033',
'centerOfRotation': '0 0 0',
'VerticalExaggeration': '1',
'geoOrigin': '36.80, -121.87, -400',
'speed': '1.0',
'zNear': '100.0',
'zFar': '30000.0',
'selected': '1'
},
'https://stoqs.mbari.org/x3d/Monterey25_1x/Monterey25_1x_src_scene.x3d':
{
'name': 'Monterey25_1x',
'position': '-32985.28634 88026.90417 22334.02600',
'orientation': '-0.99875 -0.04772 0.01482 1.31683',
'centerOfRotation':
'-20564.015827789044 -1956.065669754069 14112.954469753739',
'VerticalExaggeration': '1',
'geoOrigin': '36.80, -121.87, -400',
'speed': '1.0',
'zNear': '-1',
'zFar': '-1',
},
},
# Do not check in .grd files to the repository, keep them in the loaders directory
grdTerrain=os.path.join(parent_dir,
'MontereyCanyonBeds_1m+5m.grd'),
##grdTerrain=os.path.join(parent_dir, 'Monterey25.grd'),
)
# Base OPeNDAP server
self.cl.bed_base = 'http://dods.mbari.org/opendap/data/CCE_Processed/BEDs/'
# Copied from ProjectLibrary to BEDs SVN working dir for netCDF conversion, and then copied to elvis.
# See BEDs/BEDs/Visualization/py/makeBEDNetCDF_CCE.sh
self.cl.bed_parms = [
'XA', 'YA', 'ZA', 'A', 'XR', 'YR', 'ZR', 'ROT_RATE', 'ROT_COUNT',
'P', 'P_ADJUSTED', 'P_RATE', 'P_SPLINE', 'P_SPLINE_RATE',
'ROT_DIST', 'IMPLIED_VELOCITY', 'BED_DEPTH_CSI', 'BED_DEPTH',
'BED_DEPTH_LI', 'DIST_TOPO', 'TUMBLE_RATE', 'TUMBLE_COUNT', 'TIDE',
'ROT_X', 'ROT_Y', 'ROT_Z', 'AXIS_X', 'AXIS_Y', 'AXIS_Z', 'ANGLE'
]
# Just the event files for the CCE
self.cl.bed_files_framegrabs_2016 = [
# Uncomment to test 3D replay of BED motion
# - Gymbol lock problems mess up the visualization, so this remains confusing
##('BED00/Simulated/netcdf/BED00_SIM_rolling_trajectory.nc', ''),
##('BED00/Simulated/netcdf/BED00_cycle_rot_axes_200_202_trajectory.nc', ''),
##('BED00/Simulated/netcdf/BED00_cycle_rot_axes_300_302_trajectory.nc', ''),
# Uncomment to load data from Bench orientation video
('BED00/2013_04_29_Bench_Orientation/BED00092.nc',
'http://dods.mbari.org/data/CCE_Processed/BEDs/Notes/BEDS_2013_04_29_Video_X3D_orientation.m4v'
),
]
self.cl.bed_files_framegrabs = self.cl.bed_files_framegrabs_2016
self.cl.bed_files = [ffg[0] for ffg in self.cl.bed_files_framegrabs]
self.cl.bed_framegrabs = [
ffg[1] for ffg in self.cl.bed_files_framegrabs
]
self.cl.bed_platforms = [f.split('/')[0] for f in self.cl.bed_files]
self.cl.process_command_line()
cl = CCELoader(
'stoqs_cce2015',
'Coordinated Canyon Experiment',
description=
'Coordinated Canyon Experiment - Measuring turbidity flows in Monterey Submarine Canyon',
x3dTerrains={
'http://stoqs.mbari.org/x3d/MontereyCanyonBeds_1m+5m_1x_src/MontereyCanyonBeds_1m+5m_1x_src_scene.x3d':
{
'name': 'MontereyCanyonBeds_1m+5m_1x',
'position': '2232.80938 10346.25515 3543.76722',
'orientation': '-0.98394 0.16804 -0.06017 1.25033',
'centerOfRotation': '0 0 0',
'VerticalExaggeration': '1',
'geoOrigin': '36.80, -121.87, -400',
'speed': '1.0',
'zNear': '100.0',
'zFar': '30000.0',
'selected': '1'
},
'http://stoqs.mbari.org/x3d/Monterey25_1x/Monterey25_1x_src_scene.x3d':
{
'name': 'Monterey25_1x',
'position': '-32985.28634 88026.90417 22334.02600',
'orientation': '-0.99875 -0.04772 0.01482 1.31683',
'centerOfRotation':
'-20564.015827789044 -1956.065669754069 14112.954469753739',
'VerticalExaggeration': '1',
'geoOrigin': '36.80, -121.87, -400',
'speed': '1.0',
'zNear': '-1',
'zFar': '-1',
},
},
# Do not check in .grd files to the repository, keep them in the loaders directory
grdTerrain=os.path.join(parent_dir, 'MontereyCanyonBeds_1m+5m.grd'),
##grdTerrain=os.path.join(parent_dir, 'Monterey25.grd'),
)
cl = CCELoader('stoqs_cce2015', 'Coordinated Canyon Experiment',
description = 'Coordinated Canyon Experiment - Measuring turbidity flows in Monterey Submarine Canyon',
x3dTerrains = {
'http://stoqs.mbari.org/x3d/MontereyCanyonBeds_1m+5m_1x_src/MontereyCanyonBeds_1m+5m_1x_src_scene.x3d': {
'name': 'MontereyCanyonBeds_1m+5m_1x',
'position': '2232.80938 10346.25515 3543.76722',
'orientation': '-0.98394 0.16804 -0.06017 1.25033',
'centerOfRotation': '0 0 0',
'VerticalExaggeration': '1',
'geoOrigin': '36.80, -121.87, -400',
'speed': '1.0',
'zNear': '100.0',
'zFar': '30000.0',
'selected': '1'
},
'http://stoqs.mbari.org/x3d/Monterey25_1x/Monterey25_1x_src_scene.x3d': {
'name': 'Monterey25_1x',
'position': '-32985.28634 88026.90417 22334.02600',
'orientation': '-0.99875 -0.04772 0.01482 1.31683',
'centerOfRotation': '-20564.015827789044 -1956.065669754069 14112.954469753739',
'VerticalExaggeration': '1',
'geoOrigin': '36.80, -121.87, -400',
'speed': '1.0',
'zNear': '-1',
'zFar': '-1',
},
},
# Do not check in .grd files to the repository, keep them in the loaders directory
##grdTerrain=os.path.join(parent_dir, 'MontereyCanyonBeds_1m+5m.grd'),
grdTerrain=os.path.join(parent_dir, 'Monterey25.grd'),
)