os.environ['DJANGO_SETTINGS_MODULE']='settings'
project_dir = os.path.dirname(__file__)
parentDir = os.path.join(os.path.dirname(__file__), "../")
sys.path.insert(0, parentDir)  # settings.py is one dir up

from CCE import CCELoader

cl = CCELoader('stoqs_beds_canyon_events', 'BEDS - Canyon Events',
                                description = 'Benthic Event Detector data for significant events in Monterey Canyon',
                                x3dTerrains = { 
                                    'http://stoqs.mbari.org/terrain/MontereyCanyonBeds_1m+5m_1x_src/MontereyCanyonBeds_1m+5m_1x_src_scene.x3d': {
                                        'position': '2232.80938 10346.25515 3543.76722',
                                        'orientation': '-0.98394 0.16804 -0.06017 1.25033',
                                        'centerOfRotation': '0 0 0',
                                        'VerticalExaggeration': '1',
                                        'geoOrigin': '36.80, -121.87, -400',
                                        'speed': '1.0',
                                        'zNear': '100.0',
                                        'zFar': '30000.0',
                                    },
                                 },
                                 # Do not check in .grd files to the repository, keep them in the loaders directory
                                 grdTerrain=os.path.join(parentDir, 'MontereyCanyonBeds_1m+5m.grd'),
               )

# Base OPeNDAP server
cl.bed_base = 'http://dods.mbari.org/opendap/data/beds/CanyonEvents/'
# Copied from ProjectLibrary to Hyrax server on elvis with:
#   rsync -r /mbari/ProjectLibrary/901006.BEDS/BEDS.Data/CanyonEvents /var/www/dods_html/data/beds

cl.bed_parms = ['XA', 'YA', 'ZA', 'A', 'XR', 'YR', 'ZR', 'ROT_RATE', 'ROT_COUNT', 'P', 'P_ADJUSTED',
Exemple #2
0
project_dir = os.path.dirname(__file__)
parentDir = os.path.join(os.path.dirname(__file__), "../")
sys.path.insert(0, parentDir)  # settings.py is one dir up

from CCE import CCELoader
import timing

cl = CCELoader('stoqs_beds_canyon_events', 'BEDS - Canyon Events',
                                description = 'Benthic Event Detector data for significant events in Monterey Canyon',
                                x3dTerrains = { 
                                    'https://stoqs.mbari.org/terrain/MontereyCanyonBeds_1m+5m_1x_src/MontereyCanyonBeds_1m+5m_1x_src_scene.x3d': {
                                        'position': '2232.80938 10346.25515 3543.76722',
                                        'orientation': '-0.98394 0.16804 -0.06017 1.25033',
                                        'centerOfRotation': '0 0 0',
                                        'VerticalExaggeration': '1',
                                        'geoOrigin': '36.80, -121.87, -400',
                                        'speed': '1.0',
                                        'zNear': '100.0',
                                        'zFar': '30000.0',
                                    },
                                 },
                                 # Do not check in .grd files to the repository, keep them in the loaders directory
                                 grdTerrain=os.path.join(parentDir, 'MontereyCanyonBeds_1m+5m.grd'),
               )

# Base OPeNDAP server
cl.bed_base = 'http://dods.mbari.org/opendap/data/beds/CanyonEvents/'
# Copied from ProjectLibrary to Hyrax server on elvis with:
#   rsync -r /mbari/ProjectLibrary/901006.BEDS/BEDS.Data/CanyonEvents /var/www/dods_html/data/beds

cl.bed_parms = ['XA', 'YA', 'ZA', 'A', 'XR', 'YR', 'ZR', 'ROT_RATE', 'ROT_COUNT', 'P', 'P_ADJUSTED',
    def __init__(self,
                 db_alias='stoqs_cce2015',
                 campaign_name='Coordinated Canyon Experiment'):
        self.cl = CCELoader(
            db_alias,
            campaign_name,
            description=
            'Coordinated Canyon Experiment - Measuring turbidity flows in Monterey Submarine Canyon',
            x3dTerrains={
                'https://stoqs.mbari.org/x3d/MontereyCanyonBeds_1m+5m_1x_src/MontereyCanyonBeds_1m+5m_1x_src_scene.x3d':
                {
                    'name': 'MontereyCanyonBeds_1m+5m_1x',
                    'position': '2232.80938 10346.25515 3543.76722',
                    'orientation': '-0.98394 0.16804 -0.06017 1.25033',
                    'centerOfRotation': '0 0 0',
                    'VerticalExaggeration': '1',
                    'geoOrigin': '36.80, -121.87, -400',
                    'speed': '1.0',
                    'zNear': '100.0',
                    'zFar': '30000.0',
                    'selected': '1'
                },
                'https://stoqs.mbari.org/x3d/Monterey25_1x/Monterey25_1x_src_scene.x3d':
                {
                    'name': 'Monterey25_1x',
                    'position': '-32985.28634 88026.90417 22334.02600',
                    'orientation': '-0.99875 -0.04772 0.01482 1.31683',
                    'centerOfRotation':
                    '-20564.015827789044 -1956.065669754069 14112.954469753739',
                    'VerticalExaggeration': '1',
                    'geoOrigin': '36.80, -121.87, -400',
                    'speed': '1.0',
                    'zNear': '-1',
                    'zFar': '-1',
                },
            },
            # Do not check in .grd files to the repository, keep them in the loaders directory
            grdTerrain=os.path.join(parent_dir,
                                    'MontereyCanyonBeds_1m+5m.grd'),
            ##grdTerrain=os.path.join(parent_dir, 'Monterey25.grd'),
        )

        # Base OPeNDAP server
        self.cl.bed_base = 'http://dods.mbari.org/opendap/data/CCE_Processed/BEDs/'

        # Copied from ProjectLibrary to BEDs SVN working dir for netCDF conversion, and then copied to elvis.
        # See BEDs/BEDs/Visualization/py/makeBEDNetCDF_CCE.sh

        self.cl.bed_parms = [
            'XA', 'YA', 'ZA', 'A', 'XR', 'YR', 'ZR', 'ROT_RATE', 'ROT_COUNT',
            'P', 'P_ADJUSTED', 'P_RATE', 'P_SPLINE', 'P_SPLINE_RATE',
            'ROT_DIST', 'IMPLIED_VELOCITY', 'BED_DEPTH_CSI', 'BED_DEPTH',
            'BED_DEPTH_LI', 'DIST_TOPO', 'TUMBLE_RATE', 'TUMBLE_COUNT', 'TIDE',
            'ROT_X', 'ROT_Y', 'ROT_Z', 'AXIS_X', 'AXIS_Y', 'AXIS_Z', 'ANGLE'
        ]

        # Several BED files: 30200078 to 3020080
        # bed_files, bed_platforms, bed_depths must have same number of items; they are zipped together in the load
        ##self.cl.bed_files = [(f'CanyonEvents/BED3/20151001_20160115/{n}.nc') for n in range(30200078, 30200081)]
        ##self.cl.bed_platforms = ['BED03'] * len(self.cl.bed_files)
        ##self.cl.bed_depths = [201] * len(self.cl.bed_files)

        # Just the event files for the CCE
        self.cl.bed_files_framegrabs_2015 = [
            ('BED04/MBCCE_BED04_20151004_Event20151201/netcdf/40100037_full_traj.nc',
             'http://search.mbari.org/ARCHIVE/frameGrabs/Ventana/stills/2015/vnta3872/00_17_50_24.html'
             ),
            ('BED05/MBCCE_BED05_20151027_Event20151201/netcdf/50200024_decim_traj.nc',
             'http://search.mbari.org/ARCHIVE/frameGrabs/Ventana/stills/2015/vnta3873/00_29_56_03.html'
             ),
        ]
        self.cl.bed_files_framegrabs_2016 = [
            ('BED03/20151001_20160115/netcdf/30200078_full_traj.nc',
             'http://search.mbari.org/ARCHIVE/frameGrabs/Ventana/stills/2015/vnta3874/00_21_23_28.html'
             ),
            ('BED06/20151001_20160115/netcdf/60100068_full_traj.nc',
             'http://search.mbari.org/ARCHIVE/frameGrabs/Ventana/stills/2015/vnta3870/00_15_38_23.html'
             ),
            ('BED03/MBCCE_BED03_20160212_Event20160217/netcdf/30300004_decim_traj.nc',
             ''),
            ('BED05/MBCCE_BED05_20151027_Event20160115/netcdf/50200054_decim_traj.nc',
             ''),
            ('BED05/MBCCE_BED05_20151027_Event20160115/netcdf/50200055_decim_traj.nc',
             ''),
            ('BED05/MBCCE_BED05_20151027_Event20160115/netcdf/50200056_decim_traj.nc',
             ''),
            ('BED05/MBCCE_BED05_20151027_Event20160115/netcdf/50200057_decim_traj.nc',
             ''),
            ('BED03/MBCCE_BED03_20160212_Event20160306/netcdf/30300016_decim_traj.nc',
             ''),
            ('BED06/MBCCE_BED06_20160222_Event20160306/netcdf/60200011_decim_traj.nc',
             ''),
            ('BED06/MBCCE_BED06_20160222_Event20160306/netcdf/60200012_decim_traj.nc',
             ''),
            ('BED06/MBCCE_BED06_20160222_Event20160901/netcdf/60200130_decim_traj.nc',
             ''),
            ('BED09/MBCCE_BED09_20160408_Event20160901/netcdf/90100096_decim_traj.nc',
             'http://search.mbari.org/ARCHIVE/frameGrabs/Ventana/stills/2016/vnta3922/02_55_51_27.html'
             ),
            ('BED10/MBCCE_BED10_20160408_Event20160901/netcdf/A0100096_decim_traj.nc',
             'http://search.mbari.org/ARCHIVE/frameGrabs/Ventana/stills/2016/vnta3921/02_05_37_16.html'
             ),

            # Uncomment to test 3D replay of BED motion - it should rotate only around the X-Axis
            ##('BED00/Simulated/netcdf/BED00_SIM_rolling_trajectory.nc',
            ##    ''),
        ] + [(
            f'BED09/MBCCE_BED09_20160408_Event20161124/netcdf/901001{n}_full_traj.nc',
            ''
        ) for n in (list(range(56, 63)) + list(range(64, 65)))] + [
            ('BED09/MBCCE_BED09_20160408_Event20161124/netcdf/90100165_full.nc',
             ''),
            ('BED03/MBCCE_BED03_20161005_Event20161124/netcdf/30400015_decim_traj.nc',
             ''),
            ('BED10/MBCCE_BED10_20160408_Event20161124/netcdf/A0100154_decim_traj.nc',
             ''),
            ('BED04/MBCCE_BED04_20151004_Event20161124/netcdf/40200014_decim_traj.nc',
             ''),
        ]
        self.cl.bed_files_framegrabs_2017 = [
            (f'BED09/MBCCE_BED09_20160408_Watch/netcdf/9010000{n}.nc', '')
            for n in range(4, 8)
        ] + [
            ('BED09/MBCCE_BED09_20160408_Event20170109/netcdf/90100196_full_traj.nc',
             ''),
            ('BED11/MBCCE_BED11_20161010_Event20170109/netcdf/B0100026_full_traj.nc',
             ''),
            ('BED11/MBCCE_BED11_20161010_Event20170109/netcdf/B0100027_full.nc',
             ''),
            ('BED11/MBCCE_BED11_20161010_Event20170109/netcdf/B0100028_full_traj.nc',
             ''),
            ##('BED00/Simulated/netcdf/BED00_cycle_rot_axes_200_202_trajectory.nc',
            ##    ''),
            ('BED08/MBCCE_BED08_20161005_Event20161124/netcdf/80200014_decim_traj.nc',
             'http://search.mbari.org/ARCHIVE/frameGrabs/Ventana/stills/2016/vnta3969/00_26_09_00.html'
             ),
            ('BED08/MBCCE_BED08_20161005_Event20161124/netcdf/80200014_full_traj.nc',
             'http://search.mbari.org/ARCHIVE/frameGrabs/Ventana/stills/2016/vnta3969/00_26_09_00.html'
             ),
            ('BED08/MBCCE_BED08_20161005_Event20161124/netcdf/80200015_full_traj.nc',
             'http://search.mbari.org/ARCHIVE/frameGrabs/Ventana/stills/2016/vnta3969/00_26_09_00.html'
             ),
            ('BED08/MBCCE_BED08_20161005_Event20161124/netcdf/80200016_decim_traj.nc',
             'http://search.mbari.org/ARCHIVE/frameGrabs/Ventana/stills/2016/vnta3969/00_26_09_00.html'
             ),
            ('BED08/MBCCE_BED08_20161005_Event20161124/netcdf/80200016_full_traj.nc',
             'http://search.mbari.org/ARCHIVE/frameGrabs/Ventana/stills/2016/vnta3969/00_26_09_00.html'
             ),
            ('BED08/MBCCE_BED08_20161005_Event20161124/netcdf/80200017_full_traj.nc',
             'http://search.mbari.org/ARCHIVE/frameGrabs/Ventana/stills/2016/vnta3969/00_26_09_00.html'
             ),
            ('BED08/MBCCE_BED08_20161005_Event20161124/netcdf/80200019_full_traj.nc',
             'http://search.mbari.org/ARCHIVE/frameGrabs/Ventana/stills/2016/vnta3969/00_26_09_00.html'
             ),
            ('BED08/MBCCE_BED08_20161005_Event20161124/netcdf/80200020_decim_traj.nc',
             'http://search.mbari.org/ARCHIVE/frameGrabs/Ventana/stills/2016/vnta3969/00_26_09_00.html'
             ),
            ('BED08/MBCCE_BED08_20161005_Event20161124/netcdf/80200020_full_traj.nc',
             'http://search.mbari.org/ARCHIVE/frameGrabs/Ventana/stills/2016/vnta3969/00_26_09_00.html'
             ),
            ('BED08/MBCCE_BED08_20161005_Event20170109/netcdf/80200034_decim_traj.nc',
             'http://search.mbari.org/ARCHIVE/frameGrabs/Ventana/stills/2016/vnta3969/00_26_09_00.html'
             ),
            ('BED08/MBCCE_BED08_20161005_Event20170109/netcdf/80200039_full_traj.nc',
             'http://search.mbari.org/ARCHIVE/frameGrabs/Ventana/stills/2016/vnta3969/00_26_09_00.html'
             ),
            ('BED08/MBCCE_BED08_20161005_Event20170203/netcdf/80200046_decim_traj.nc',
             'http://search.mbari.org/ARCHIVE/frameGrabs/Ventana/stills/2016/vnta3969/00_26_09_00.html'
             ),
            ('BED08/MBCCE_BED08_20161005_Event20170218/netcdf/80200050_decim_traj.nc',
             'http://search.mbari.org/ARCHIVE/frameGrabs/Ventana/stills/2016/vnta3969/00_26_09_00.html'
             ),
            ('BED08/MBCCE_BED08_20161005_Event20170218/netcdf/80200052_full_traj.nc',
             'http://search.mbari.org/ARCHIVE/frameGrabs/Ventana/stills/2016/vnta3969/00_26_09_00.html'
             ),
            ('BED11/MBCCE_BED11_20161010_Event20161124/netcdf/B0100012_decim_traj.nc',
             ''),
            ('BED06/MBCCE_BED06_20160222_Event20170109/netcdf/60200218_decim_traj.nc',
             ''),
            ('BED06/MBCCE_BED06_20160222_Event20170109/netcdf/60200219_decim_traj.nc',
             ''),
            ('BED03/MBCCE_BED03_20161005_Event20170203/netcdf/30400034_full_traj.nc',
             ''),
            ('BED06/MBCCE_BED06_20160222_Event20170203/netcdf/60200236_decim_traj.nc',
             ''),
            ('BED06/MBCCE_BED06_20160222_Event20170218/netcdf/60200246_decim_traj.nc',
             ''),
            ('BED11/MBCCE_BED11_20161010_Event20170203/netcdf/B0100036_full_traj.nc',
             ''),
            ('BED11/MBCCE_BED11_20161010_Event20170203/netcdf/B0100037_full.nc',
             ''),
        ]
        self.cl.bed_files_framegrabs = self.cl.bed_files_framegrabs_2015 + self.cl.bed_files_framegrabs_2016 + self.cl.bed_files_framegrabs_2017

        self.cl.bed_files = [ffg[0] for ffg in self.cl.bed_files_framegrabs]
        self.cl.bed_framegrabs = [
            ffg[1] for ffg in self.cl.bed_files_framegrabs
        ]
        self.cl.bed_platforms = [f.split('/')[0] for f in self.cl.bed_files]
        # Execute just before loading BEDs data, as this delays the start of loading mooring data
        ##self.cl.bed_depths = np.round(self.cl.get_start_bed_depths(), 1)

        # CCE event start and end times for loading mooring data
        self.lores_event_times = lores_event_times
        self.hires_event_times = hires_event_times

        # CCE SIN (Seafloor Instrument Node) data - all parameters but the timeseriesprofile ADCP data
        # There are 3 categories of loaded data:
        # 1. 10-minute resolution entire timeseries of non-profile parameters
        # 2. Low resolution profile data (ADCP) for a few days around each event
        # 3. High resolution profile data (ADCP) for a several hours around each event
        self.cl.ccesin_nominaldepth = 1836
        self.cl.ccesin_base = 'http://dods.mbari.org/opendap/data/CCE_Processed/SIN/'
        self.cl.ccesin_files = [
            '20151013/CTDOBSTrans/MBCCE_SIN_CTDOBSTrans_20151013_timecorrected.nc',
            '20151013/OX/MBCCE_SIN_OX_20151013_timecorrected.nc',
            '20151013/FLNTU/MBCCE_SIN_FLNTU_20151013_timecorrected.nc',
            '20151013/ADCP300/MBCCE_SIN_ADCP300_20151013.nc',
            '20151013/ADCP600/MBCCE_SIN_ADCP600_20151013.nc',
            '20151013/ADCP1200/MBCCE_SIN_ADCP1200_20151013.nc',
            '20160417/CTDOBSTrans/MBCCE_SIN_CTDOBSTrans_20160417_timecorrected.nc',
            '20160417/OX/MBCCE_SIN_OX_20160417_timecorrected.nc',
            '20160417/FLNTU/MBCCE_SIN_FLNTU_20160417_timecorrected.nc',
            '20161018/CTDOBSTrans/MBCCE_SIN_CTDOBSTrans_20161018_timecorrected.nc',
            '20161018/OX/MBCCE_SIN_OX_20161018_timecorrected.nc',
            '20161018/FLNTU/MBCCE_SIN_FLNTU_20161018_timecorrected.nc',
        ]
        self.cl.ccesin_parms = [
            'pressure', 'temperature', 'conductivity', 'turbidity',
            'optical_backscatter', 'oxygen', 'saturation',
            'optode_temperature', 'chlor', 'ntu1', 'ntu2', 'Hdg_1215',
            'Ptch_1216', 'Roll_1217'
        ]

        # CCE SIN (Seafloor Instrument Node) data - files and parameters to load for just the events:
        # Just the timeseriesprofile ADCP data
        self.cl.ccesin_nominaldepth_ev = self.cl.ccesin_nominaldepth
        self.cl.ccesin_base_ev = self.cl.ccesin_base
        self.cl.ccesin_files_ev = [
            '20151013/ADCP300/MBCCE_SIN_ADCP300_20151013.nc',
            '20151013/ADCP600/MBCCE_SIN_ADCP600_20151013.nc',
            '20151013/ADCP1200/MBCCE_SIN_ADCP1200_20151013.nc',
        ]
        self.cl.ccesin_parms_ev = ['u_1205', 'v_1206', 'w_1204', 'AGC_1202']
        # Just the timeseries data for the highres period
        self.cl.ccesin_files_ev_hires = [
            '20151013/CTDOBSTrans/MBCCE_SIN_CTDOBSTrans_20151013_timecorrected.nc',
            '20151013/OX/MBCCE_SIN_OX_20151013_timecorrected.nc',
            '20151013/FLNTU/MBCCE_SIN_FLNTU_20151013_timecorrected.nc',
            '20160417/CTDOBSTrans/MBCCE_SIN_CTDOBSTrans_20160417_timecorrected.nc',
            '20160417/OX/MBCCE_SIN_OX_20160417_timecorrected.nc',
            '20160417/FLNTU/MBCCE_SIN_FLNTU_20160417_timecorrected.nc',
            '20161018/CTDOBSTrans/MBCCE_SIN_CTDOBSTrans_20161018_timecorrected.nc',
            '20161018/OX/MBCCE_SIN_OX_20161018_timecorrected.nc',
            '20161018/FLNTU/MBCCE_SIN_FLNTU_20161018_timecorrected.nc',
        ]
        self.cl.ccesin_parms_ev_hires = [
            'pressure', 'temperature', 'conductivity', 'turbidity',
            'optical_backscatter', 'oxygen', 'saturation',
            'optode_temperature', 'chlor', 'ntu1', 'ntu2', 'Hdg_1215',
            'Ptch_1216', 'Roll_1217'
        ]

        # MS1 ADCP data - timeseries data
        self.cl.ccems1_nominal_depth = 225
        self.cl.ccems1_base = 'http://dods.mbari.org/opendap/data/CCE_Archive/MS1/'
        self.cl.ccems1_files = [
            '20151006/ADCP300/MBCCE_MS1_ADCP300_20151006.nc',
            '20151006/Aquadopp2000/MBCCE_MS1_Aquadopp2000_20151006.nc',
            '20151006/CTOBSTrans9m/MBCCE_MS1_CTOBSTrans9m_20151006.nc',
            '20151006/TD65m/MBCCE_MS1_TD65m_20151006.nc',
            '20151006/TU35m/MBCCE_MS1_TU35m_20151006.nc',
            '20151006/TU65m/MBCCE_MS1_TU65m_20151006.nc',
        ]
        self.cl.ccems1_parms = [
            'Hdg_1215',
            'Ptch_1216',
            'Roll_1217',
            'P_1',
            'T_1211',
            'T_28',
            'S_41',
            'ST_70',
            'tran_4010',
            'ATTN_55',
            'NEP_56',
            'Trb_980',
        ]
        # MS1 ADCP data - timeseriesprofile (ADCP) data
        self.cl.ccems1_nominal_depth_ev = self.cl.ccems1_nominal_depth
        self.cl.ccems1_base_ev = self.cl.ccems1_base
        self.cl.ccems1_files_ev = [
            '20151006/ADCP300/MBCCE_MS1_ADCP300_20151006.nc',
            '20151006/Aquadopp2000/MBCCE_MS1_Aquadopp2000_20151006.nc',
        ]
        self.cl.ccems1_parms_ev = ['u_1205', 'v_1206', 'w_1204', 'AGC_1202']

        # MS2 ADCP data - timeseries data
        self.cl.ccems2_nominal_depth = 462
        self.cl.ccems2_base = 'http://dods.mbari.org/opendap/data/CCE_Archive/MS2/'
        self.cl.ccems2_files = [
            '20151005/ADCP300/MBCCE_MS2_ADCP300_20151005.nc',
            '20151005/CTD9m/MBCCE_MS2_CTD9m_20151005.nc',
            '20151005/TU9m/MBCCE_MS2_TU9m_20151005.nc',
        ]
        self.cl.ccems2_parms = [
            'Hdg_1215',
            'Ptch_1216',
            'Roll_1217',
            'D_3',
            'P_1',
            'T_28',
            'S_41',
            'NEP_56',
            'Trb_980',
        ]
        # MS2 ADCP data - timeseriesprofile (ADCP) data
        self.cl.ccems2_nominal_depth_ev = self.cl.ccems2_nominal_depth
        self.cl.ccems2_base_ev = self.cl.ccems2_base
        self.cl.ccems2_files_ev = [
            '20151005/ADCP300/MBCCE_MS2_ADCP300_20151005.nc',
        ]
        self.cl.ccems2_parms_ev = ['u_1205', 'v_1206', 'w_1204', 'AGC_1202']

        # MS3 ADCP and CTD data - timeseries data
        self.cl.ccems3_nominal_depth = 764
        self.cl.ccems3_base = 'http://dods.mbari.org/opendap/data/CCE_Archive/MS3/'
        self.cl.ccems3_files = [
            '20151005/ADCP300/MBCCE_MS3_ADCP300_20151005.nc',
            '20151005/Aquadopp2000/MBCCE_MS3_Aquadopp2000_20151005.nc',
            '20151005/CT9m/MBCCE_MS3_CT9m_20151005.nc',
            '20151005/TU9m/MBCCE_MS3_TU9m_20151005.nc',
        ]
        self.cl.ccems3_parms = [
            'Hdg_1215',
            'Ptch_1216',
            'Roll_1217',
            'P_1',
            'T_1211',
            'NEP1_56',
            'T_28',
            'S_41',
            'ST_70',
            'tran_4010',
            'ATTN_55',
        ]
        # MS3 ADCP data - timeseriesprofile (ADCP) data
        self.cl.ccems3_nominal_depth_ev = self.cl.ccems3_nominal_depth
        self.cl.ccems3_base_ev = self.cl.ccems3_base
        self.cl.ccems3_files_ev = [
            '20151005/ADCP300/MBCCE_MS3_ADCP300_20151005.nc',
            '20151005/Aquadopp2000/MBCCE_MS3_Aquadopp2000_20151005.nc',
        ]
        self.cl.ccems3_parms_ev = ['u_1205', 'v_1206', 'w_1204', 'AGC_1202']

        # MS4 ADCP - 20151005 data files are corrupted
        ##self.cl.ccems4_nominal_depth = 462
        ##self.cl.ccems4_base = 'http://dods.mbari.org/opendap/data/CCE_Archive/MS4...'
        ##self.cl.ccems4_files = [ '' ]
        ##self.cl.ccems4_parms = [ 'u_1205', 'v_1206', 'w_1204', 'AGC_1202', ]
        ##self.cl.ccems4_parms = [ 'u_1205', 'v_1206', 'w_1204', 'AGC_1202', 'Hdg_1215', 'Ptch_1216', 'Roll_1217']

        # MS5 ADCP data - timeseries data
        self.cl.ccems5_nominal_depth = 1315
        self.cl.ccems5_base = 'http://dods.mbari.org/opendap/data/CCE_Archive/MS5/'
        self.cl.ccems5_files = [
            '20151020/ADCP300/MBCCE_MS5_ADCP300_20151020.nc',
        ]
        self.cl.ccems5_parms = ['Hdg_1215', 'Ptch_1216', 'Roll_1217']

        # MS3 ADCP data - timeseriesprofile (ADCP) data
        self.cl.ccems5_nominal_depth_ev = self.cl.ccems5_nominal_depth
        self.cl.ccems5_base_ev = self.cl.ccems5_base
        self.cl.ccems5_files_ev = [
            '20151020/ADCP300/MBCCE_MS5_ADCP300_20151020.nc',
        ]
        self.cl.ccems5_parms_ev = ['u_1205', 'v_1206', 'w_1204', 'AGC_1202']

        # Full-deployment files, exatracted from SSDS with stride of 60
        ##self.cl.ccesin_base = 'http://dods.mbari.org/opendap/data/ssdsdata/deployments/ccesin2015/201510/'
        ##self.cl.ccesin_files = [
        ##                'ccesin2015_aanderaaoxy_20151013.nc',
        ##                'ccesin2015_adcp1825_20151013.nc',
        ##                'ccesin2015_adcp1827_20151013.nc',
        ##                'ccesin2015_adcp1828_20151013.nc',
        ##                'ccesin2015_ecotriplet_20151013.nc',
        ##                'ccesin2015_sbe16_20151013.nc',
        ##               ]
        ##self.cl.ccesin_base = 'http://dods.mbari.org/opendap/data/ssdsdata/deployments/ccesin20160115/201601/'
        ##self.cl.ccesin_files = [
        ##                ##'ccesin20160115_aanderaaoxy_20160115.nc',
        ##                'ccesin20160115_adcp1825_20160115.nc',
        ##                'ccesin20160115_adcp1827_20160115.nc',
        ##                'ccesin20160115_adcp1828_20160115.nc',
        ##                ##'ccesin20160115_ecotriplet_20160115.nc',
        ##                ##'ccesin20160115_sbe16_20160115.nc',
        ##               ]
        ##self.cl.ccesin_parms = [
        ##                'u_component_uncorrected', 'v_component_uncorrected',
        ##                'echo_intensity_beam1',
        ##                #'echo_intensity_beam2', 'echo_intensity_beam3', 'echo_intensity_beam4',
        ##                #'std_head', 'std_pitch', 'std_roll', 'xdcr_temperature',
        ##                ##'Pressure', 'Salinity', 'Temperature',
        ##                ##'AirSaturation', 'Oxygen',
        ##                ##'Chlor', 'NTU1', 'NTU2',
        ##                  ]

        # Execute the load for trajectory representation
        self.cl.process_command_line()
Exemple #4
0
cl = CCELoader('stoqs_cce2015', 'Coordinated Canyon Experiment',
                description = 'Coordinated Canyon Experiment - Measuring turbidity flows in Monterey Submarine Canyon',
                x3dTerrains = { 
                    'http://stoqs.mbari.org/x3d/MontereyCanyonBeds_1m+5m_1x_src/MontereyCanyonBeds_1m+5m_1x_src_scene.x3d': {
                        'name': 'MontereyCanyonBeds_1m+5m_1x',
                        'position': '2232.80938 10346.25515 3543.76722',
                        'orientation': '-0.98394 0.16804 -0.06017 1.25033',
                        'centerOfRotation': '0 0 0',
                        'VerticalExaggeration': '1',
                        'geoOrigin': '36.80, -121.87, -400',
                        'speed': '1.0',
                        'zNear': '100.0',
                        'zFar': '30000.0',
                        'selected': '1'
                    },
                    'http://stoqs.mbari.org/x3d/Monterey25_1x/Monterey25_1x_src_scene.x3d': {
                        'name': 'Monterey25_1x',
                        'position': '-32985.28634 88026.90417 22334.02600',
                        'orientation': '-0.99875 -0.04772 0.01482 1.31683',
                        'centerOfRotation': '-20564.015827789044 -1956.065669754069 14112.954469753739',
                        'VerticalExaggeration': '1',
                        'geoOrigin': '36.80, -121.87, -400',
                        'speed': '1.0',
                        'zNear': '-1',
                        'zFar': '-1',
                    },
                 },
                 # Do not check in .grd files to the repository, keep them in the loaders directory
                 grdTerrain=os.path.join(parent_dir, 'MontereyCanyonBeds_1m+5m.grd'),
                 ##grdTerrain=os.path.join(parent_dir, 'Monterey25.grd'),
               )
Exemple #5
0
    def __init__(self, db_alias='stoqs_cce2015', campaign_name='Coordinated Canyon Experiment'):
        self.cl = CCELoader(db_alias, campaign_name,
                description = 'Coordinated Canyon Experiment - Measuring turbidity flows in Monterey Submarine Canyon',
                x3dTerrains = { 
                    'https://stoqs.mbari.org/x3d/MontereyCanyonBeds_1m+5m_1x_src/MontereyCanyonBeds_1m+5m_1x_src_scene.x3d': {
                        'name': 'MontereyCanyonBeds_1m+5m_1x',
                        'position': '2232.80938 10346.25515 3543.76722',
                        'orientation': '-0.98394 0.16804 -0.06017 1.25033',
                        'centerOfRotation': '0 0 0',
                        'VerticalExaggeration': '1',
                        'geoOrigin': '36.80, -121.87, -400',
                        'speed': '1.0',
                        'zNear': '100.0',
                        'zFar': '30000.0',
                        'selected': '1'
                    },
                    'https://stoqs.mbari.org/x3d/Monterey25_1x/Monterey25_1x_src_scene.x3d': {
                        'name': 'Monterey25_1x',
                        'position': '-32985.28634 88026.90417 22334.02600',
                        'orientation': '-0.99875 -0.04772 0.01482 1.31683',
                        'centerOfRotation': '-20564.015827789044 -1956.065669754069 14112.954469753739',
                        'VerticalExaggeration': '1',
                        'geoOrigin': '36.80, -121.87, -400',
                        'speed': '1.0',
                        'zNear': '-1',
                        'zFar': '-1',
                    },
                 },
                 # Do not check in .grd files to the repository, keep them in the loaders directory
                 grdTerrain=os.path.join(parent_dir, 'MontereyCanyonBeds_1m+5m.grd'),
                 ##grdTerrain=os.path.join(parent_dir, 'Monterey25.grd'),
               )

        # Base OPeNDAP server
        self.cl.bed_base = 'http://dods.mbari.org/opendap/data/CCE_Processed/BEDs/'

        # Copied from ProjectLibrary to BEDs SVN working dir for netCDF conversion, and then copied to elvis.
        # See BEDs/BEDs/Visualization/py/makeBEDNetCDF_CCE.sh

        self.cl.bed_parms = ['XA', 'YA', 'ZA', 'A', 'XR', 'YR', 'ZR', 'ROT_RATE', 'ROT_COUNT', 'P', 'P_ADJUSTED',
                        'P_RATE', 'P_SPLINE', 'P_SPLINE_RATE', 'ROT_DIST', 'IMPLIED_VELOCITY', 'BED_DEPTH_CSI',
                        'BED_DEPTH', 'BED_DEPTH_LI', 'DIST_TOPO', 'TUMBLE_RATE', 'TUMBLE_COUNT', 'TIDE',
                        'ROT_X', 'ROT_Y', 'ROT_Z', 'AXIS_X', 'AXIS_Y', 'AXIS_Z', 'ANGLE']

        # Several BED files: 30200078 to 3020080
        # bed_files, bed_platforms, bed_depths must have same number of items; they are zipped together in the load
        ##self.cl.bed_files = [(f'CanyonEvents/BED3/20151001_20160115/{n}.nc') for n in range(30200078, 30200081)]
        ##self.cl.bed_platforms = ['BED03'] * len(self.cl.bed_files)
        ##self.cl.bed_depths = [201] * len(self.cl.bed_files)

        # Just the event files for the CCE
        self.cl.bed_files_framegrabs_2015 = [
                        ('BED04/MBCCE_BED04_20151004_Event20151201/netcdf/40100037_full_traj.nc',
                         'http://search.mbari.org/ARCHIVE/frameGrabs/Ventana/stills/2015/vnta3872/00_17_50_24.html'),
                        ('BED05/MBCCE_BED05_20151027_Event20151201/netcdf/50200024_decim_traj.nc',
                            'http://search.mbari.org/ARCHIVE/frameGrabs/Ventana/stills/2015/vnta3873/00_29_56_03.html'),
                        ]
        self.cl.bed_files_framegrabs_2016 = [
                        ('BED03/20151001_20160115/netcdf/30200078_full_traj.nc',
                            'http://search.mbari.org/ARCHIVE/frameGrabs/Ventana/stills/2015/vnta3874/00_21_23_28.html'),
                        ('BED06/20151001_20160115/netcdf/60100068_full_traj.nc',
                            'http://search.mbari.org/ARCHIVE/frameGrabs/Ventana/stills/2015/vnta3870/00_15_38_23.html'),
                        ('BED03/MBCCE_BED03_20160212_Event20160217/netcdf/30300004_decim_traj.nc',
                            ''),
                        ('BED05/MBCCE_BED05_20151027_Event20160115/netcdf/50200054_decim_traj.nc',
                            ''),
                        ('BED05/MBCCE_BED05_20151027_Event20160115/netcdf/50200055_decim_traj.nc',
                            ''),
                        ('BED05/MBCCE_BED05_20151027_Event20160115/netcdf/50200056_decim_traj.nc',
                            ''),
                        ('BED05/MBCCE_BED05_20151027_Event20160115/netcdf/50200057_decim_traj.nc',
                            ''),
                        ('BED03/MBCCE_BED03_20160212_Event20160306/netcdf/30300016_decim_traj.nc',
                            ''),
                        ('BED06/MBCCE_BED06_20160222_Event20160306/netcdf/60200011_decim_traj.nc',
                            ''),
                        ('BED06/MBCCE_BED06_20160222_Event20160306/netcdf/60200012_decim_traj.nc',
                            ''),
                        ('BED06/MBCCE_BED06_20160222_Event20160901/netcdf/60200130_decim_traj.nc',
                            ''),
                        ('BED09/MBCCE_BED09_20160408_Event20160901/netcdf/90100096_decim_traj.nc',
                            'http://search.mbari.org/ARCHIVE/frameGrabs/Ventana/stills/2016/vnta3922/02_55_51_27.html'),
                        ('BED10/MBCCE_BED10_20160408_Event20160901/netcdf/A0100096_decim_traj.nc',
                            'http://search.mbari.org/ARCHIVE/frameGrabs/Ventana/stills/2016/vnta3921/02_05_37_16.html'),

                        # Uncomment to test 3D replay of BED motion - it should rotate only around the X-Axis
                        ##('BED00/Simulated/netcdf/BED00_SIM_rolling_trajectory.nc',
                        ##    ''),
                        ] + [
                        (f'BED09/MBCCE_BED09_20160408_Event20161124/netcdf/901001{n}_full_traj.nc', '') for n in (
                            list(range(56, 63)) + list(range(64, 65)))
                        ] + [
                        ('BED09/MBCCE_BED09_20160408_Event20161124/netcdf/90100165_full.nc',
                            ''),
                        ('BED03/MBCCE_BED03_20161005_Event20161124/netcdf/30400015_decim_traj.nc',
                            ''),
                        ('BED10/MBCCE_BED10_20160408_Event20161124/netcdf/A0100154_decim_traj.nc',
                            ''),
                        ('BED04/MBCCE_BED04_20151004_Event20161124/netcdf/40200014_decim_traj.nc',
                            ''),
                        ] 
        self.cl.bed_files_framegrabs_2017 = [
                        (f'BED09/MBCCE_BED09_20160408_Watch/netcdf/9010000{n}.nc', '') for n in range(4, 8)
                        ] + [
                        ('BED09/MBCCE_BED09_20160408_Event20170109/netcdf/90100196_full_traj.nc',
                            ''),
                        ('BED11/MBCCE_BED11_20161010_Event20170109/netcdf/B0100026_full_traj.nc',
                            ''),
                        ('BED11/MBCCE_BED11_20161010_Event20170109/netcdf/B0100027_full.nc',
                            ''),
                        ('BED11/MBCCE_BED11_20161010_Event20170109/netcdf/B0100028_full_traj.nc',
                            ''),
                        ('BED00/Simulated/netcdf/BED00_cycle_rot_axes_200_202_trajectory.nc',
                            ''),
                        ('BED08/MBCCE_BED08_20161005_Event20161124/netcdf/80200014_decim_traj.nc',
                            'http://search.mbari.org/ARCHIVE/frameGrabs/Ventana/stills/2016/vnta3969/00_26_09_00.html'),
                        ('BED08/MBCCE_BED08_20161005_Event20161124/netcdf/80200014_full_traj.nc',
                            'http://search.mbari.org/ARCHIVE/frameGrabs/Ventana/stills/2016/vnta3969/00_26_09_00.html'),
                        ('BED08/MBCCE_BED08_20161005_Event20161124/netcdf/80200015_full_traj.nc',
                            'http://search.mbari.org/ARCHIVE/frameGrabs/Ventana/stills/2016/vnta3969/00_26_09_00.html'),
                        ('BED08/MBCCE_BED08_20161005_Event20161124/netcdf/80200016_decim_traj.nc',
                            'http://search.mbari.org/ARCHIVE/frameGrabs/Ventana/stills/2016/vnta3969/00_26_09_00.html'),
                        ('BED08/MBCCE_BED08_20161005_Event20161124/netcdf/80200016_full_traj.nc',
                            'http://search.mbari.org/ARCHIVE/frameGrabs/Ventana/stills/2016/vnta3969/00_26_09_00.html'),
                        ('BED08/MBCCE_BED08_20161005_Event20161124/netcdf/80200017_full_traj.nc',
                            'http://search.mbari.org/ARCHIVE/frameGrabs/Ventana/stills/2016/vnta3969/00_26_09_00.html'),
                        ('BED08/MBCCE_BED08_20161005_Event20161124/netcdf/80200019_full_traj.nc',
                            'http://search.mbari.org/ARCHIVE/frameGrabs/Ventana/stills/2016/vnta3969/00_26_09_00.html'),
                        ('BED08/MBCCE_BED08_20161005_Event20161124/netcdf/80200020_decim_traj.nc',
                            'http://search.mbari.org/ARCHIVE/frameGrabs/Ventana/stills/2016/vnta3969/00_26_09_00.html'),
                        ('BED08/MBCCE_BED08_20161005_Event20161124/netcdf/80200020_full_traj.nc',
                            'http://search.mbari.org/ARCHIVE/frameGrabs/Ventana/stills/2016/vnta3969/00_26_09_00.html'),
                        ('BED08/MBCCE_BED08_20161005_Event20170109/netcdf/80200034_decim_traj.nc',
                            'http://search.mbari.org/ARCHIVE/frameGrabs/Ventana/stills/2016/vnta3969/00_26_09_00.html'),
                        ('BED08/MBCCE_BED08_20161005_Event20170109/netcdf/80200039_full_traj.nc',
                            'http://search.mbari.org/ARCHIVE/frameGrabs/Ventana/stills/2016/vnta3969/00_26_09_00.html'),
                        ('BED08/MBCCE_BED08_20161005_Event20170203/netcdf/80200046_decim_traj.nc',
                            'http://search.mbari.org/ARCHIVE/frameGrabs/Ventana/stills/2016/vnta3969/00_26_09_00.html'),
                        ('BED08/MBCCE_BED08_20161005_Event20170218/netcdf/80200050_decim_traj.nc',
                            'http://search.mbari.org/ARCHIVE/frameGrabs/Ventana/stills/2016/vnta3969/00_26_09_00.html'),
                        ('BED08/MBCCE_BED08_20161005_Event20170218/netcdf/80200052_full_traj.nc',
                            'http://search.mbari.org/ARCHIVE/frameGrabs/Ventana/stills/2016/vnta3969/00_26_09_00.html'),
                        ('BED11/MBCCE_BED11_20161010_Event20161124/netcdf/B0100012_decim_traj.nc',
                            ''),
                        ('BED06/MBCCE_BED06_20160222_Event20170109/netcdf/60200218_decim_traj.nc',
                            ''),
                        ('BED06/MBCCE_BED06_20160222_Event20170109/netcdf/60200219_decim_traj.nc',
                            ''),
                        ('BED03/MBCCE_BED03_20161005_Event20170203/netcdf/30400034_full_traj.nc',
                            ''),
                        ('BED06/MBCCE_BED06_20160222_Event20170203/netcdf/60200236_decim_traj.nc',
                            ''),
                        ('BED06/MBCCE_BED06_20160222_Event20170218/netcdf/60200246_decim_traj.nc',
                            ''),
                        ('BED11/MBCCE_BED11_20161010_Event20170203/netcdf/B0100036_full_traj.nc',
                            ''),
                        ('BED11/MBCCE_BED11_20161010_Event20170203/netcdf/B0100037_full.nc',
                            ''),
                        ]
        self.cl.bed_files_framegrabs = self.cl.bed_files_framegrabs_2015 + self.cl.bed_files_framegrabs_2016 + self.cl.bed_files_framegrabs_2017

        self.cl.bed_files = [ffg[0] for ffg in self.cl.bed_files_framegrabs]
        self.cl.bed_framegrabs = [ffg[1] for ffg in self.cl.bed_files_framegrabs]
        self.cl.bed_platforms = [f.split('/')[0] for f in  self.cl.bed_files ]
        # Execute just before loading BEDs data, as this delays the start of loading mooring data
        ##self.cl.bed_depths = np.round(self.cl.get_start_bed_depths(), 1)

        # CCE event start and end times for loading mooring data
        self.lores_event_times = lores_event_times
        self.hires_event_times = hires_event_times

        # CCE SIN (Seafloor Instrument Node) data - all parameters but the timeseriesprofile ADCP data
        # There are 3 categories of loaded data:
        # 1. 10-minute resolution entire timeseries of non-profile parameters
        # 2. Low resolution profile data (ADCP) for a few days around each event
        # 3. High resolution profile data (ADCP) for a several hours around each event
        self.cl.ccesin_nominaldepth = 1836
        self.cl.ccesin_base = 'http://dods.mbari.org/opendap/data/CCE_Processed/SIN/'
        self.cl.ccesin_files = [
                            '20151013/CTDOBSTrans/MBCCE_SIN_CTDOBSTrans_20151013_timecorrected.nc',
                            '20151013/OX/MBCCE_SIN_OX_20151013_timecorrected.nc',
                            '20151013/FLNTU/MBCCE_SIN_FLNTU_20151013_timecorrected.nc',
                            '20151013/ADCP300/MBCCE_SIN_ADCP300_20151013.nc',
                            '20151013/ADCP600/MBCCE_SIN_ADCP600_20151013.nc',
                            '20151013/ADCP1200/MBCCE_SIN_ADCP1200_20151013.nc',

                            '20160417/CTDOBSTrans/MBCCE_SIN_CTDOBSTrans_20160417_timecorrected.nc',
                            '20160417/OX/MBCCE_SIN_OX_20160417_timecorrected.nc',
                            '20160417/FLNTU/MBCCE_SIN_FLNTU_20160417_timecorrected.nc',

                            '20161018/CTDOBSTrans/MBCCE_SIN_CTDOBSTrans_20161018_timecorrected.nc',
                            '20161018/OX/MBCCE_SIN_OX_20161018_timecorrected.nc',
                            '20161018/FLNTU/MBCCE_SIN_FLNTU_20161018_timecorrected.nc',
                          ]
        self.cl.ccesin_parms = [ 'pressure', 'temperature', 'conductivity', 'turbidity', 'optical_backscatter',
                            'oxygen', 'saturation', 'optode_temperature',
                            'chlor', 'ntu1', 'ntu2',
                            'Hdg_1215', 'Ptch_1216', 'Roll_1217']

        # CCE SIN (Seafloor Instrument Node) data - files and parameters to load for just the events:
        # Just the timeseriesprofile ADCP data
        self.cl.ccesin_nominaldepth_ev = self.cl.ccesin_nominaldepth
        self.cl.ccesin_base_ev = self.cl.ccesin_base
        self.cl.ccesin_files_ev = [
                            '20151013/ADCP300/MBCCE_SIN_ADCP300_20151013.nc',
                            '20151013/ADCP600/MBCCE_SIN_ADCP600_20151013.nc',
                            '20151013/ADCP1200/MBCCE_SIN_ADCP1200_20151013.nc',
                          ]
        self.cl.ccesin_parms_ev = [ 'u_1205', 'v_1206', 'w_1204', 'AGC_1202' ]
        # Just the timeseries data for the highres period
        self.cl.ccesin_files_ev_hires = [
                            '20151013/CTDOBSTrans/MBCCE_SIN_CTDOBSTrans_20151013_timecorrected.nc',
                            '20151013/OX/MBCCE_SIN_OX_20151013_timecorrected.nc',
                            '20151013/FLNTU/MBCCE_SIN_FLNTU_20151013_timecorrected.nc',

                            '20160417/CTDOBSTrans/MBCCE_SIN_CTDOBSTrans_20160417_timecorrected.nc',
                            '20160417/OX/MBCCE_SIN_OX_20160417_timecorrected.nc',
                            '20160417/FLNTU/MBCCE_SIN_FLNTU_20160417_timecorrected.nc',

                            '20161018/CTDOBSTrans/MBCCE_SIN_CTDOBSTrans_20161018_timecorrected.nc',
                            '20161018/OX/MBCCE_SIN_OX_20161018_timecorrected.nc',
                            '20161018/FLNTU/MBCCE_SIN_FLNTU_20161018_timecorrected.nc',
                            ]
        self.cl.ccesin_parms_ev_hires = [ 'pressure', 'temperature', 'conductivity', 'turbidity', 'optical_backscatter',
                            'oxygen', 'saturation', 'optode_temperature',
                            'chlor', 'ntu1', 'ntu2',
                            'Hdg_1215', 'Ptch_1216', 'Roll_1217']

        # MS1 ADCP data - timeseries data
        self.cl.ccems1_nominal_depth = 225
        self.cl.ccems1_base = 'http://dods.mbari.org/opendap/data/CCE_Archive/MS1/'
        self.cl.ccems1_files = [ 
                           '20151006/ADCP300/MBCCE_MS1_ADCP300_20151006.nc',
                           '20151006/Aquadopp2000/MBCCE_MS1_Aquadopp2000_20151006.nc',
                           '20151006/CTOBSTrans9m/MBCCE_MS1_CTOBSTrans9m_20151006.nc',
                           '20151006/TD65m/MBCCE_MS1_TD65m_20151006.nc',
                           '20151006/TU35m/MBCCE_MS1_TU35m_20151006.nc',
                           '20151006/TU65m/MBCCE_MS1_TU65m_20151006.nc',
                          ]
        self.cl.ccems1_parms = [ 
                           'Hdg_1215', 'Ptch_1216', 'Roll_1217',
                           'P_1', 'T_1211',
                           'T_28', 'S_41', 'ST_70', 'tran_4010', 'ATTN_55', 'NEP_56', 'Trb_980',
                          ]
        # MS1 ADCP data - timeseriesprofile (ADCP) data
        self.cl.ccems1_nominal_depth_ev = self.cl.ccems1_nominal_depth
        self.cl.ccems1_base_ev = self.cl.ccems1_base
        self.cl.ccems1_files_ev = [ 
                           '20151006/ADCP300/MBCCE_MS1_ADCP300_20151006.nc',
                           '20151006/Aquadopp2000/MBCCE_MS1_Aquadopp2000_20151006.nc',
                          ]
        self.cl.ccems1_parms_ev = [ 'u_1205', 'v_1206', 'w_1204', 'AGC_1202' ]

        # MS2 ADCP data - timeseries data
        self.cl.ccems2_nominal_depth = 462
        self.cl.ccems2_base = 'http://dods.mbari.org/opendap/data/CCE_Archive/MS2/'
        self.cl.ccems2_files = [ 
                           '20151005/ADCP300/MBCCE_MS2_ADCP300_20151005.nc',
                           '20151005/CTD9m/MBCCE_MS2_CTD9m_20151005.nc',
                           '20151005/TU9m/MBCCE_MS2_TU9m_20151005.nc',
                          ]
        self.cl.ccems2_parms = [ 
                           'Hdg_1215', 'Ptch_1216', 'Roll_1217',
                           'D_3', 'P_1', 'T_28', 'S_41',
                           'NEP_56', 'Trb_980',
                          ]
        # MS2 ADCP data - timeseriesprofile (ADCP) data
        self.cl.ccems2_nominal_depth_ev = self.cl.ccems2_nominal_depth
        self.cl.ccems2_base_ev = self.cl.ccems2_base
        self.cl.ccems2_files_ev = [ 
                           '20151005/ADCP300/MBCCE_MS2_ADCP300_20151005.nc',
                          ]
        self.cl.ccems2_parms_ev = [ 'u_1205', 'v_1206', 'w_1204', 'AGC_1202' ]

        # MS3 ADCP and CTD data - timeseries data
        self.cl.ccems3_nominal_depth = 764
        self.cl.ccems3_base = 'http://dods.mbari.org/opendap/data/CCE_Archive/MS3/'
        self.cl.ccems3_files = [ 
                           '20151005/ADCP300/MBCCE_MS3_ADCP300_20151005.nc',
                           '20151005/Aquadopp2000/MBCCE_MS3_Aquadopp2000_20151005.nc',
                           '20151005/CT9m/MBCCE_MS3_CT9m_20151005.nc',
                           '20151005/TU9m/MBCCE_MS3_TU9m_20151005.nc',
                          ]
        self.cl.ccems3_parms = [ 
                           'Hdg_1215', 'Ptch_1216', 'Roll_1217',
                           'P_1', 'T_1211', 'NEP1_56',
                           'T_28', 'S_41', 'ST_70',
                           'tran_4010', 'ATTN_55',
                          ]
        # MS3 ADCP data - timeseriesprofile (ADCP) data
        self.cl.ccems3_nominal_depth_ev = self.cl.ccems3_nominal_depth
        self.cl.ccems3_base_ev = self.cl.ccems3_base
        self.cl.ccems3_files_ev = [ 
                           '20151005/ADCP300/MBCCE_MS3_ADCP300_20151005.nc',
                           '20151005/Aquadopp2000/MBCCE_MS3_Aquadopp2000_20151005.nc',
                          ]
        self.cl.ccems3_parms_ev = [ 'u_1205', 'v_1206', 'w_1204', 'AGC_1202' ]


        # MS4 ADCP - 20151005 data files are corrupted
        ##self.cl.ccems4_nominal_depth = 462
        ##self.cl.ccems4_base = 'http://dods.mbari.org/opendap/data/CCE_Archive/MS4...'
        ##self.cl.ccems4_files = [ '' ]
        ##self.cl.ccems4_parms = [ 'u_1205', 'v_1206', 'w_1204', 'AGC_1202', ]
        ##self.cl.ccems4_parms = [ 'u_1205', 'v_1206', 'w_1204', 'AGC_1202', 'Hdg_1215', 'Ptch_1216', 'Roll_1217']


        # MS5 ADCP data - timeseries data
        self.cl.ccems5_nominal_depth = 1315
        self.cl.ccems5_base = 'http://dods.mbari.org/opendap/data/CCE_Archive/MS5/'
        self.cl.ccems5_files = [ 
                           '20151020/ADCP300/MBCCE_MS5_ADCP300_20151020.nc',
                          ]
        self.cl.ccems5_parms = [ 'Hdg_1215', 'Ptch_1216', 'Roll_1217']

        # MS3 ADCP data - timeseriesprofile (ADCP) data
        self.cl.ccems5_nominal_depth_ev = self.cl.ccems5_nominal_depth
        self.cl.ccems5_base_ev = self.cl.ccems5_base
        self.cl.ccems5_files_ev = [ 
                           '20151020/ADCP300/MBCCE_MS5_ADCP300_20151020.nc',
                          ]
        self.cl.ccems5_parms_ev = [ 'u_1205', 'v_1206', 'w_1204', 'AGC_1202' ]

        # Full-deployment files, exatracted from SSDS with stride of 60
        ##self.cl.ccesin_base = 'http://dods.mbari.org/opendap/data/ssdsdata/deployments/ccesin2015/201510/'
        ##self.cl.ccesin_files = [
        ##                'ccesin2015_aanderaaoxy_20151013.nc',
        ##                'ccesin2015_adcp1825_20151013.nc',
        ##                'ccesin2015_adcp1827_20151013.nc',
        ##                'ccesin2015_adcp1828_20151013.nc',
        ##                'ccesin2015_ecotriplet_20151013.nc',
        ##                'ccesin2015_sbe16_20151013.nc',
        ##               ]
        ##self.cl.ccesin_base = 'http://dods.mbari.org/opendap/data/ssdsdata/deployments/ccesin20160115/201601/'
        ##self.cl.ccesin_files = [
        ##                ##'ccesin20160115_aanderaaoxy_20160115.nc',
        ##                'ccesin20160115_adcp1825_20160115.nc',
        ##                'ccesin20160115_adcp1827_20160115.nc',
        ##                'ccesin20160115_adcp1828_20160115.nc',
        ##                ##'ccesin20160115_ecotriplet_20160115.nc',
        ##                ##'ccesin20160115_sbe16_20160115.nc',
        ##               ]
        ##self.cl.ccesin_parms = [
        ##                'u_component_uncorrected', 'v_component_uncorrected',
        ##                'echo_intensity_beam1', 
        ##                #'echo_intensity_beam2', 'echo_intensity_beam3', 'echo_intensity_beam4',
        ##                #'std_head', 'std_pitch', 'std_roll', 'xdcr_temperature',
        ##                ##'Pressure', 'Salinity', 'Temperature',
        ##                ##'AirSaturation', 'Oxygen',
        ##                ##'Chlor', 'NTU1', 'NTU2',
        ##                  ] 


        # Execute the load for trajectory representation
        self.cl.process_command_line()
Exemple #6
0
cl = CCELoader('stoqs_cce2015', 'Coordinated Canyon Experiment',
                description = 'Coordinated Canyon Experiment - Measuring turbidity flows in Monterey Submarine Canyon',
                x3dTerrains = { 
                    'http://stoqs.mbari.org/x3d/MontereyCanyonBeds_1m+5m_1x_src/MontereyCanyonBeds_1m+5m_1x_src_scene.x3d': {
                        'name': 'MontereyCanyonBeds_1m+5m_1x',
                        'position': '2232.80938 10346.25515 3543.76722',
                        'orientation': '-0.98394 0.16804 -0.06017 1.25033',
                        'centerOfRotation': '0 0 0',
                        'VerticalExaggeration': '1',
                        'geoOrigin': '36.80, -121.87, -400',
                        'speed': '1.0',
                        'zNear': '100.0',
                        'zFar': '30000.0',
                        'selected': '1'
                    },
                    'http://stoqs.mbari.org/x3d/Monterey25_1x/Monterey25_1x_src_scene.x3d': {
                        'name': 'Monterey25_1x',
                        'position': '-32985.28634 88026.90417 22334.02600',
                        'orientation': '-0.99875 -0.04772 0.01482 1.31683',
                        'centerOfRotation': '-20564.015827789044 -1956.065669754069 14112.954469753739',
                        'VerticalExaggeration': '1',
                        'geoOrigin': '36.80, -121.87, -400',
                        'speed': '1.0',
                        'zNear': '-1',
                        'zFar': '-1',
                    },
                 },
                 # Do not check in .grd files to the repository, keep them in the loaders directory
                 grdTerrain=os.path.join(parent_dir, 'MontereyCanyonBeds_1m+5m.grd'),
                 ##grdTerrain=os.path.join(parent_dir, 'Monterey25.grd'),
               )
Exemple #7
0
cl = CCELoader('stoqs_cce2015', 'Coordinated Canyon Experiment',
                description = 'Coordinated Canyon Experiment - Measuring turbidity flows in Monterey Submarine Canyon',
                x3dTerrains = { 
                    'http://stoqs.mbari.org/x3d/MontereyCanyonBeds_1m+5m_1x_src/MontereyCanyonBeds_1m+5m_1x_src_scene.x3d': {
                        'name': 'MontereyCanyonBeds_1m+5m_1x',
                        'position': '2232.80938 10346.25515 3543.76722',
                        'orientation': '-0.98394 0.16804 -0.06017 1.25033',
                        'centerOfRotation': '0 0 0',
                        'VerticalExaggeration': '1',
                        'geoOrigin': '36.80, -121.87, -400',
                        'speed': '1.0',
                        'zNear': '100.0',
                        'zFar': '30000.0',
                        'selected': '1'
                    },
                    'http://stoqs.mbari.org/x3d/Monterey25_1x/Monterey25_1x_src_scene.x3d': {
                        'name': 'Monterey25_1x',
                        'position': '-32985.28634 88026.90417 22334.02600',
                        'orientation': '-0.99875 -0.04772 0.01482 1.31683',
                        'centerOfRotation': '-20564.015827789044 -1956.065669754069 14112.954469753739',
                        'VerticalExaggeration': '1',
                        'geoOrigin': '36.80, -121.87, -400',
                        'speed': '1.0',
                        'zNear': '-1',
                        'zFar': '-1',
                    },
                 },
                 # Do not check in .grd files to the repository, keep them in the loaders directory
                 ##grdTerrain=os.path.join(parent_dir, 'MontereyCanyonBeds_1m+5m.grd'),
                 grdTerrain=os.path.join(parent_dir, 'Monterey25.grd'),
               )
Exemple #8
0
import sys
from datetime import datetime
parent_dir = os.path.join(os.path.dirname(__file__), "../")
sys.path.insert(0, parent_dir)  # settings.py is one dir up

from CCE import CCELoader

cl = CCELoader('stoqs_cce2015', 'Coordinated Canyon Experiment',
                                description = 'Coordinated Canyon Experiment - Measuring turbidity flows in Monterey Submarine Canyon',
                                x3dTerrains = { 
                                    'http://stoqs.mbari.org/terrain/MontereyCanyonBeds_1m+5m_1x_src/MontereyCanyonBeds_1m+5m_1x_src_scene.x3d': {
                                        'position': '2232.80938 10346.25515 3543.76722',
                                        'orientation': '-0.98394 0.16804 -0.06017 1.25033',
                                        'centerOfRotation': '0 0 0',
                                        'VerticalExaggeration': '1',
                                        'geoOrigin': '36.80, -121.87, -400',
                                        'speed': '1.0',
                                        'zNear': '100.0',
                                        'zFar': '30000.0',
                                    },
                                 },
                                 # Do not check in .grd files to the repository, keep them in the loaders directory
                                 grdTerrain=os.path.join(parent_dir, 'MontereyCanyonBeds_1m+5m.grd'),
               )

# Base OPeNDAP server
cl.bed_base = 'http://elvis64.shore.mbari.org/opendap/data/CCE_Processed/BEDs/'

# Copied from ProjectLibrary to BEDs SVN working dir for netCDF conversion, and then copied to elvis.
# See BEDs/BEDs/Visualization/py/makeBEDNetCDF_CCE.sh
Exemple #9
0
    def __init__(self,
                 db_alias='stoqs_bed_viz',
                 campaign_name='BED rotation visualization'):
        self.cl = CCELoader(
            db_alias,
            campaign_name,
            description=
            'Bentic Event Detector quaternion data visualization database',
            x3dTerrains={
                'https://stoqs.mbari.org/x3d/MontereyCanyonBeds_1m+5m_1x_src/MontereyCanyonBeds_1m+5m_1x_src_scene.x3d':
                {
                    'name': 'MontereyCanyonBeds_1m+5m_1x',
                    'position': '2232.80938 10346.25515 3543.76722',
                    'orientation': '-0.98394 0.16804 -0.06017 1.25033',
                    'centerOfRotation': '0 0 0',
                    'VerticalExaggeration': '1',
                    'geoOrigin': '36.80, -121.87, -400',
                    'speed': '1.0',
                    'zNear': '100.0',
                    'zFar': '30000.0',
                    'selected': '1'
                },
                'https://stoqs.mbari.org/x3d/Monterey25_1x/Monterey25_1x_src_scene.x3d':
                {
                    'name': 'Monterey25_1x',
                    'position': '-32985.28634 88026.90417 22334.02600',
                    'orientation': '-0.99875 -0.04772 0.01482 1.31683',
                    'centerOfRotation':
                    '-20564.015827789044 -1956.065669754069 14112.954469753739',
                    'VerticalExaggeration': '1',
                    'geoOrigin': '36.80, -121.87, -400',
                    'speed': '1.0',
                    'zNear': '-1',
                    'zFar': '-1',
                },
            },
            # Do not check in .grd files to the repository, keep them in the loaders directory
            grdTerrain=os.path.join(parent_dir,
                                    'MontereyCanyonBeds_1m+5m.grd'),
            ##grdTerrain=os.path.join(parent_dir, 'Monterey25.grd'),
        )

        # Base OPeNDAP server
        self.cl.bed_base = 'http://dods.mbari.org/opendap/data/CCE_Processed/BEDs/'

        # Copied from ProjectLibrary to BEDs SVN working dir for netCDF conversion, and then copied to elvis.
        # See BEDs/BEDs/Visualization/py/makeBEDNetCDF_CCE.sh

        self.cl.bed_parms = [
            'XA', 'YA', 'ZA', 'A', 'XR', 'YR', 'ZR', 'ROT_RATE', 'ROT_COUNT',
            'P', 'P_ADJUSTED', 'P_RATE', 'P_SPLINE', 'P_SPLINE_RATE',
            'ROT_DIST', 'IMPLIED_VELOCITY', 'BED_DEPTH_CSI', 'BED_DEPTH',
            'BED_DEPTH_LI', 'DIST_TOPO', 'TUMBLE_RATE', 'TUMBLE_COUNT', 'TIDE',
            'ROT_X', 'ROT_Y', 'ROT_Z', 'AXIS_X', 'AXIS_Y', 'AXIS_Z', 'ANGLE'
        ]

        # Just the event files for the CCE
        self.cl.bed_files_framegrabs_2016 = [
            # Uncomment to test 3D replay of BED motion
            # - Gymbol lock problems mess up the visualization, so this remains confusing
            ##('BED00/Simulated/netcdf/BED00_SIM_rolling_trajectory.nc', ''),
            ##('BED00/Simulated/netcdf/BED00_cycle_rot_axes_200_202_trajectory.nc', ''),
            ##('BED00/Simulated/netcdf/BED00_cycle_rot_axes_300_302_trajectory.nc', ''),

            # Uncomment to load data from Bench orientation video
            ('BED00/2013_04_29_Bench_Orientation/BED00092.nc',
             'http://dods.mbari.org/data/CCE_Processed/BEDs/Notes/BEDS_2013_04_29_Video_X3D_orientation.m4v'
             ),
        ]

        self.cl.bed_files_framegrabs = self.cl.bed_files_framegrabs_2016

        self.cl.bed_files = [ffg[0] for ffg in self.cl.bed_files_framegrabs]
        self.cl.bed_framegrabs = [
            ffg[1] for ffg in self.cl.bed_files_framegrabs
        ]
        self.cl.bed_platforms = [f.split('/')[0] for f in self.cl.bed_files]

        self.cl.process_command_line()
Exemple #10
0
cl = CCELoader(
    'stoqs_cce2015',
    'Coordinated Canyon Experiment',
    description=
    'Coordinated Canyon Experiment - Measuring turbidity flows in Monterey Submarine Canyon',
    x3dTerrains={
        'http://stoqs.mbari.org/x3d/MontereyCanyonBeds_1m+5m_1x_src/MontereyCanyonBeds_1m+5m_1x_src_scene.x3d':
        {
            'name': 'MontereyCanyonBeds_1m+5m_1x',
            'position': '2232.80938 10346.25515 3543.76722',
            'orientation': '-0.98394 0.16804 -0.06017 1.25033',
            'centerOfRotation': '0 0 0',
            'VerticalExaggeration': '1',
            'geoOrigin': '36.80, -121.87, -400',
            'speed': '1.0',
            'zNear': '100.0',
            'zFar': '30000.0',
            'selected': '1'
        },
        'http://stoqs.mbari.org/x3d/Monterey25_1x/Monterey25_1x_src_scene.x3d':
        {
            'name': 'Monterey25_1x',
            'position': '-32985.28634 88026.90417 22334.02600',
            'orientation': '-0.99875 -0.04772 0.01482 1.31683',
            'centerOfRotation':
            '-20564.015827789044 -1956.065669754069 14112.954469753739',
            'VerticalExaggeration': '1',
            'geoOrigin': '36.80, -121.87, -400',
            'speed': '1.0',
            'zNear': '-1',
            'zFar': '-1',
        },
    },
    # Do not check in .grd files to the repository, keep them in the loaders directory
    grdTerrain=os.path.join(parent_dir, 'MontereyCanyonBeds_1m+5m.grd'),
    ##grdTerrain=os.path.join(parent_dir, 'Monterey25.grd'),
)
Exemple #11
0
cl = CCELoader('stoqs_cce2015', 'Coordinated Canyon Experiment',
                description = 'Coordinated Canyon Experiment - Measuring turbidity flows in Monterey Submarine Canyon',
                x3dTerrains = { 
                    'http://stoqs.mbari.org/x3d/MontereyCanyonBeds_1m+5m_1x_src/MontereyCanyonBeds_1m+5m_1x_src_scene.x3d': {
                        'name': 'MontereyCanyonBeds_1m+5m_1x',
                        'position': '2232.80938 10346.25515 3543.76722',
                        'orientation': '-0.98394 0.16804 -0.06017 1.25033',
                        'centerOfRotation': '0 0 0',
                        'VerticalExaggeration': '1',
                        'geoOrigin': '36.80, -121.87, -400',
                        'speed': '1.0',
                        'zNear': '100.0',
                        'zFar': '30000.0',
                        'selected': '1'
                    },
                    'http://stoqs.mbari.org/x3d/Monterey25_1x/Monterey25_1x_src_scene.x3d': {
                        'name': 'Monterey25_1x',
                        'position': '-32985.28634 88026.90417 22334.02600',
                        'orientation': '-0.99875 -0.04772 0.01482 1.31683',
                        'centerOfRotation': '-20564.015827789044 -1956.065669754069 14112.954469753739',
                        'VerticalExaggeration': '1',
                        'geoOrigin': '36.80, -121.87, -400',
                        'speed': '1.0',
                        'zNear': '-1',
                        'zFar': '-1',
                    },
                 },
                 # Do not check in .grd files to the repository, keep them in the loaders directory
                 ##grdTerrain=os.path.join(parent_dir, 'MontereyCanyonBeds_1m+5m.grd'),
                 grdTerrain=os.path.join(parent_dir, 'Monterey25.grd'),
               )