# Change this to be the congig update you actually want
# config['parameters']['AIDS_Duration_In_Months'] = 999
with open(filename, 'w') as fp
json.dump(config, fp)
return None
#### END EDIT #######################################################################
def copy_simulation(simulation, to_experiment)
simulation.refresh(query_criteria=QueryCriteria().select_children(['files', 'hpc_jobs', 'tags']))
new_simulation = Simulation(simulation.name, description=simulation.description)
new_simulation.experiment_id = to_experiment.id
tags = copy.copy(simulation.tags)
tags[CopiedFromSimulation] = simulation.id
new_simulation.set_tags(tags)
job = simulation.hpc_jobs[-1]
# override any fields here as necessary...
if job and job.configuration
new_simulation.configuration = Configuration(
environment_name=job.configuration.environment_name,
simulation_input_args=job.configuration.simulation_input_args,
working_directory_root=job.configuration.working_directory_root,
executable_path=job.configuration.executable_path,
maximum_number_of_retries=SetupParser.get(parameter='num_retries'),
def copy_simulation(simulation, to_experiment):
simulation.refresh(query_criteria=QueryCriteria().select_children(
['files', 'hpc_jobs', 'tags']))
new_simulation = Simulation(simulation.name,
description=simulation.description)
new_simulation.experiment_id = to_experiment.id
tags = copy.copy(simulation.tags)
tags["CopiedFromSimulation"] = simulation.id
new_simulation.set_tags(tags)
job = simulation.hpc_jobs[-1]
# override any fields here as necessary...
if job and job.configuration:
new_simulation.configuration = Configuration(
environment_name=job.configuration.environment_name,
simulation_input_args=job.configuration.simulation_input_args,
working_directory_root=job.configuration.working_directory_root,
executable_path=job.configuration.executable_path,
maximum_number_of_retries=SetupParser.get(parameter='num_retries'),
priority=SetupParser.get(parameter='priority'),
min_cores=job.configuration.min_cores,
max_cores=job.configuration.max_cores,
exclusive=job.configuration.exclusive,
node_group_name=SetupParser.get(parameter='node_group'),
asset_collection_id=job.configuration.asset_collection_id)
with tempfile.TemporaryDirectory() as dir:
files_to_add_last = {}
for f in simulation.files:
if f.file_name == 'config.json':
dest_file = os.path.join(dir, 'config.json')
with open(dest_file, 'wb') as fp:
fp.write(f.retrieve())
modify_config_json(dest_file)
# with open(dest_file, 'rb') as fp:
# data = fp.read()
filename = dest_file
# checksum = hashlib.md5(data).hexdigest()
sf = SimulationFile(file_name=filename,
file_type=f.file_type,
description=f.description)
files_to_add_last[filename] = sf
else:
filename = f.file_name
checksum = f.md5_checksum
sf = SimulationFile(file_name=filename,
file_type=f.file_type,
description=f.description,
md5_checksum=checksum)
new_simulation.add_file(sf)
new_simulation.save(return_missing_files=False)
if len(files_to_add_last) > 0:
for file_path, sf in files_to_add_last.items():
new_simulation.add_file(sf, file_path=file_path)
new_simulation.save(return_missing_files=False)
print('new sim = ' + str(new_simulation.id))
return new_simulation