# main
if __name__ == "__main__":
Study.setup_ctakes(CTAKES)
Study.setup_tables()
UMLS.setup_umls(UMLS_FILE)
UMLS.setup_tables()
# ask for a condition
condition = raw_input("Condition: ")
if condition is None or len(condition) < 1:
condition = 'spondylitis'
# search for studies
print "Fetching %s studies..." % condition
lilly = LillyCOI()
results = lilly.search_for(condition)
# process all studies
run_ctakes = False
i = 0
for study in results:
i += 1
print 'Processing %d of %d...' % (i, len(results))
study.sync_with_db()
study.process_eligibility_from_text()
study.codify_eligibility()
if study.waiting_for_ctakes():
run_ctakes = True
Study.sqlite_commit_if_needed()
