def run(self):
j = 0
for i in self.Seq:
modelname = readModelnameFromParamsFile(
os.path.join(
Config().readConfigEntry('bonnmotionvalidatepath'),
Config().readConfigEntry(
'tempoutputparamsfile').replace('INDEX', str(i))))
runBonnmotionModel(
Config().readConfigEntry('bonnmotionvalidatepath'), i,
modelname)
movementsfilename = os.path.join(
Config().readConfigEntry('bonnmotionvalidatepath'),
Config().readConfigEntry(
'tempoutputmovementsfile').replace('INDEX', str(i)))
f = gzip.open(movementsfilename, 'rb')
movements_content = f.read()
f.close()
if (self.Md5[j] <> Hashes().md5(movements_content)
or self.Sha1[j] <> Hashes().sha1(movements_content)):
f2 = open(
os.path.join(
Config().readConfigEntry('bonnmotionvalidatepath'),
Config().readConfigEntry(
'tempoutputparamsfile').replace(
'INDEX', str(i))), 'r')
self.ReturnValue.append(f2.read())
f2.close()
j += 1
def run(self):
for i in self.Seq:
modelname = readModelnameFromParamsFile(os.path.join(Config().readConfigEntry('bonnmotionvalidatepath'), Config().readConfigEntry('tempoutputparamsfile').replace('INDEX', str(i))))
runBonnmotionModel(Config().readConfigEntry('bonnmotionvalidatepath'), i, modelname)
paramsfilename = os.path.join(Config().readConfigEntry('bonnmotionvalidatepath'), Config().readConfigEntry('tempoutputparamsfile').replace('INDEX', str(i)))
movementsfilename = os.path.join(Config().readConfigEntry('bonnmotionvalidatepath'), Config().readConfigEntry('tempoutputmovementsfile').replace('INDEX', str(i)))
try:
#open movements file
f = gzip.open(movementsfilename, 'rb')
movements_content = f.read()
f.close()
except IOError as ex:
print >> sys.stderr, ex
print >> sys.stderr, "that means bonnmotion has not generated any output"
print >> sys.stderr, "parameter file:"
fd = open(os.path.join(Config().readConfigEntry('bonnmotionvalidatepath'), Config().readConfigEntry('tempoutputparamsfile').replace('INDEX', str(i))))
print >> sys.stderr, fd.read()
fd.close()
sys.exit(1);
p = {}
p['identifier'] = modelname
#read parameters
f2 = open(paramsfilename)
p['bmparamsfile'] = f2.read()
f2.close()
#create checksum
Hashes().calcHashes(p, movements_content)
p['user'] = getpass.getuser()
p['datetime'] = datetime.datetime.now().strftime("%Y-%m-%d %H:%M")
#save in DB
DataAccess().save(p)
def run(self):
for i in self.Seq:
for case in self.Cases:
paramsfilename = os.path.join(
Config().readConfigEntry('bonnmotionvalidatepath'),
Config().readConfigEntry(
'tempoutputparamsfile').replace('INDEX', str(i)))
movementsfilename = os.path.join(
Config().readConfigEntry('bonnmotionvalidatepath'),
Config().readConfigEntry(
'tempoutputmovementsfile').replace(
'INDEX', str(i)))
outputfilename = os.path.join(
Config().readConfigEntry('bonnmotionvalidatepath'),
Config().readConfigEntry('tempoutputname') + str(i))
if 'appparams' in case:
runBonnmotionApp(
Config().readConfigEntry('bonnmotionvalidatepath'),
i, self.App, case['appparams'])
else:
runBonnmotionApp(
Config().readConfigEntry('bonnmotionvalidatepath'),
i, self.App, '')
ordering = []
content = ''
for ext in case['extensions']:
ordering.append(ext)
#open file
if ext != 'NULL':
f = open(outputfilename + '.' + ext)
content = content + f.read()
f.close()
#read parameters
f2 = open(paramsfilename)
params = f2.read()
f2.close()
p = {}
if 'appparams' in case:
p['appparameters'] = case['appparams']
else:
p['appparameters'] = ''
p['identifier'] = self.App
p['bmparamsfile'] = params
Hashes().calcHashes(p, content)
p['user'] = getpass.getuser()
p['datetime'] = datetime.datetime.now().strftime(
"%Y-%m-%d %H:%M")
tmp = ''
for y in ordering:
tmp = tmp + y + ','
p['ordering'] = tmp[0:-1]
#save in DB
DataAccess().save(p)
def run(self):
j = 0
for i in self.Seq:
paramsfilename = os.path.join(
Config().readConfigEntry('bonnmotionvalidatepath'),
Config().readConfigEntry('tempoutputparamsfile').replace(
'INDEX', str(i.no)))
movementsfilename = os.path.join(
Config().readConfigEntry('bonnmotionvalidatepath'),
Config().readConfigEntry(
'tempoutputmovementsfile').replace('INDEX', str(i.no)))
outputfilename = os.path.join(
Config().readConfigEntry('bonnmotionvalidatepath'),
Config().readConfigEntry('tempoutputname') + str(i.no))
if len(i.appparameters) > 0:
runBonnmotionApp(
Config().readConfigEntry('bonnmotionvalidatepath'),
i.no, i.identifier, i.appparameters)
else:
runBonnmotionApp(
Config().readConfigEntry('bonnmotionvalidatepath'),
i.no, i.identifier, '')
content = ''
spliting = i.ordering.split(',')
if len(spliting) > 1: #the app creates more than 1 file
for ext in spliting:
if i.ordering != 'NULL':
f = open(outputfilename + '.' + ext)
content = content + f.read(
) #concatenate content of all files created
f.close()
else: #the app creates only one file
if i.ordering != 'NULL':
f = open(outputfilename + '.' + i.ordering)
content = f.read()
f.close()
if (i.md5 <> Hashes().md5(content)
or i.sha1 <> Hashes().sha1(content)):
f2 = open(
os.path.join(
Config().readConfigEntry('bonnmotionvalidatepath'),
Config().readConfigEntry(
'tempoutputparamsfile').replace(
'INDEX', str(i.no))), 'r')
if i.appparameters != '':
self.ReturnValue.append('parameters of bonnmotion:\n' +
f2.read() + '\nappname: ' +
i.identifier +
'\nparameters of the app:\n' +
i.appparameters)
else:
self.ReturnValue.append(
'parameters of bonnmotion:\n' + f2.read() +
'\nappname: ' + i.identifier +
'\nparameters of the app: none\n')
f2.close()
j += 1