def test_add_population(self):
test = ChildPopulationCollection(gate_type='threshold_1d')
test.add_population('pos', definition='+')
test.add_population('neg', definition='-')
self.assertListEqual(['pos', 'neg'], list(test.populations.keys()))
self.assertEqual(test.populations.get('pos').properties.get('definition'), '+')
self.assertEqual(test.populations.get('neg').properties.get('definition'), '-')
def test_serialise(self):
test = ChildPopulationCollection(gate_type='threshold_1d')
test.add_population('pos', definition='+')
test.add_population('neg', definition='-')
test = test.serialise()
self.assertDictEqual(test, dict(gate_type='threshold_1d',
populations=[dict(name='pos', definition='+'),
dict(name='neg', definition='-')]))
def test_create_from_dict(self):
test = dict(gate_type='threshold_1d', populations=[dict(name='pos', definition='+'),
dict(name='neg', definition='-')])
test = ChildPopulationCollection(json_dict=test)
self.assertListEqual(['pos', 'neg'], list(test.populations.keys()))
self.assertEqual(test.populations.get('pos').properties.get('definition'), '+')
self.assertEqual(test.populations.get('neg').properties.get('definition'), '-')
def _build(return_data: bool = False, blobs=3, **kwargs):
example_data = make_example_date(n_samples=1000, centers=blobs)
example_data['labels'] = example_data['blobID']
populations = ChildPopulationCollection(gate_type='geom')
populations.add_population('positive', definition='+')
populations.add_population('negative', definition='-')
gate = mixturemodel.MixtureModel(data=example_data,
child_populations=populations,
x='feature0',
y='feature1',
transform_x=None,
transform_y=None,
**kwargs)
if return_data:
return gate, example_data
return gate
def test_fetch_by_def(self):
test2d = ChildPopulationCollection(gate_type='threshold_2d')
test2d.add_population('pospos', definition='++')
test2d.add_population('other', definition=['--', '-+', '+-'])
self.assertEqual(test2d.fetch_by_definition('++'), 'pospos')
self.assertEqual(test2d.fetch_by_definition('--'), 'other')
def test_remove_population(self):
test = ChildPopulationCollection(gate_type='threshold_1d')
test.add_population('pos', definition='+')
test.add_population('neg', definition='-')
test.remove_population('pos')
self.assertListEqual(['neg'], list(test.populations.keys()))
def test_create(self):
test = ChildPopulationCollection(gate_type='threshold_1d')
self.assertEqual(test.gate_type, 'threshold_1d')