def basicTest(self):
j = Job()
j.setCPUTime(50000)
j.setExecutable(
'/Users/stuart/dirac/workspace/DIRAC3/DIRAC/Interfaces/API/test/myPythonScript.py'
)
# j.setExecutable('/bin/echo hello')
j.setOwner('paterson')
j.setType('test')
j.setName('MyJobName')
#j.setAncestorDepth(1)
j.setInputSandbox([
'/Users/stuart/dirac/workspace/DIRAC3/DIRAC/Interfaces/API/test/DV.opts',
'/Users/stuart/dirac/workspace/DIRAC3/DIRAC/Interfaces/API/test/DV2.opts'
])
j.setOutputSandbox(['firstfile.txt', 'anotherfile.root'])
j.setInputData([
'/lhcb/production/DC04/v2/DST/00000742_00003493_11.dst',
'/lhcb/production/DC04/v2/DST/00000742_00003493_10.dst'
])
j.setOutputData(['my.dst', 'myfile.log'])
j.setDestination('LCG.CERN.ch')
j.setPlatform('LCG')
j.setSystemConfig('x86_64-slc5-gcc43-opt')
j.setSoftwareTags(['VO-lhcb-Brunel-v30r17', 'VO-lhcb-Boole-v12r10'])
#print j._toJDL()
#print j.printObj()
xml = j._toXML()
testFile = 'jobDescription.xml'
if os.path.exists(testFile):
os.remove(testFile)
xmlfile = open(testFile, 'w')
xmlfile.write(xml)
xmlfile.close()
print '>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>Creating code for the workflow'
print j.createCode()
print '>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>Executing the workflow'
j.execute()
print '>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>Trying to run the same workflow from generated XML file'
workflow = fromXMLFile(testFile)
code = workflow.createCode()
print code
workflow.execute()
def submit_job(self,
request_id,
executable,
macro,
starting_seed=8000000,
njobs=10,
platform='ANY',
output_data_site='UKI-LT2-IC-HEP-disk',
output_log='lzproduction_output.log'):
"""
Submit LZProduction job to DIRAC.
Args:
request_id (int): The id number of the associated request
executable (str): The full path to the executable job script
macro (str): The full path to the macro for this job
starting_seed (int): The random seed for the first of the parametric jobs
njobs (int): The number of parametric jobs to create
platform (str): The required platform
output_data_site (str): The name of the grid site to store the output data at
output_log (str): The file name for the output log file
Returns:
list: The list of created parametric job DIRAC ids
"""
j = Job()
j.setName(os.path.splitext(os.path.basename(macro))[0] + '%(args)s')
j.setExecutable(os.path.basename(executable),
os.path.basename(macro) + ' %(args)s', output_log)
j.setInputSandbox([executable, macro])
j.setOutputData('*.root', output_data_site, str(request_id))
j.setParameterSequence(
"args",
[str(i) for i in xrange(starting_seed, starting_seed + njobs)],
addToWorkflow=True)
j.setPlatform(platform)
return self.status(self._dirac_api.submit(j).get("Value", []))
def basicTest(self):
j = Job()
j.setCPUTime(50000)
j.setExecutable('/Users/stuart/dirac/workspace/DIRAC3/DIRAC/Interfaces/API/test/myPythonScript.py')
# j.setExecutable('/bin/echo hello')
j.setOwner('paterson')
j.setType('test')
j.setName('MyJobName')
#j.setAncestorDepth(1)
j.setInputSandbox(['/Users/stuart/dirac/workspace/DIRAC3/DIRAC/Interfaces/API/test/DV.opts','/Users/stuart/dirac/workspace/DIRAC3/DIRAC/Interfaces/API/test/DV2.opts'])
j.setOutputSandbox(['firstfile.txt','anotherfile.root'])
j.setInputData(['/lhcb/production/DC04/v2/DST/00000742_00003493_11.dst',
'/lhcb/production/DC04/v2/DST/00000742_00003493_10.dst'])
j.setOutputData(['my.dst','myfile.log'])
j.setDestination('LCG.CERN.ch')
j.setPlatform('LCG')
j.setSystemConfig('x86_64-slc5-gcc43-opt')
j.setSoftwareTags(['VO-lhcb-Brunel-v30r17','VO-lhcb-Boole-v12r10'])
#print j._toJDL()
#print j.printObj()
xml = j._toXML()
testFile = 'jobDescription.xml'
if os.path.exists(testFile):
os.remove(testFile)
xmlfile = open(testFile,'w')
xmlfile.write(xml)
xmlfile.close()
print '>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>Creating code for the workflow'
print j.createCode()
print '>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>Executing the workflow'
j.execute()
print '>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>Trying to run the same workflow from generated XML file'
workflow = fromXMLFile(testFile)
code = workflow.createCode()
print code
workflow.execute()
args = visit + ' ' + insidename + ' ' + str(startsensor) + ' ' + str(
numsensors) + ' ' + str(idx)
outputname = 'fits_' + visit + '_' + str(idx) + '.tar'
j.setCPUTime(1209600)
j.setExecutable('runimsim2.1.sh', arguments=args)
j.stderr = "std.err"
j.stdout = "std.out"
#!!! May need the 2.1i directory here depending on visit number !!!
j.setInputSandbox([
"runimsim2.1.sh", "run_imsim_nersc.py",
"LFN:/lsst/user/j/james.perry/instcats/2.1i/" + instcatname
])
j.setOutputSandbox(["std.out", "std.err"])
j.setTag(["8Processors"])
#j.setOutputData([visit + "/" + outputname], outputPath="", outputSE=["IN2P3-CC-disk"])
j.setOutputData([visit + "/" + outputname],
outputPath="",
outputSE=["UKI-NORTHGRID-LANCS-HEP-disk"])
j.setPlatform("AnyPlatform")
j.setDestination(site)
jobID = dirac.submitJob(j)
print("Submitted job to " + site + " as ID " + str(jobID))
print "Status is:", dirac.status(jobID['JobID'])
joblistfile.write(str(jobID['JobID']) + '\n')
joblistfile.close()
args = visit + ' ' + insidename + ' ' + str(startsensor) + ' ' + str(
numsensors) + ' ' + str(idx)
outputname = 'fits_' + visit + '_' + str(idx) + '.tar'
j.setCPUTime(1209600)
j.setExecutable('launch_container.sh', arguments=args)
j.stderr = "std.err"
j.stdout = "std.out"
#!!! May need the 2.1i directory here depending on visit number !!!
j.setInputSandbox([
"launch_container.sh", "docker_run.sh", "run_imsim_nersc.py",
"parsl_imsim_configs", "finals2000A.all",
"LFN:/lsst/user/j/james.perry/2.2i_test/" + instcatname
])
j.setOutputSandbox(["std.out", "std.err"])
j.setTag(["8Processors"])
j.setOutputData([outputname],
outputPath="",
outputSE=["UKI-NORTHGRID-LANCS-HEP-disk"])
j.setPlatform("EL7")
j.setDestination(site)
jobID = dirac.submitJob(j)
print("Submitted job as ID " + str(jobID))
print "Status is:", dirac.status(jobID['JobID'])
joblistfile.write(str(jobID['JobID']) + '\n')
joblistfile.close()
inputdata_list.append(lfn + 'second/HPC_data.tar.gz.0' + str(i))
else:
inputdata_list.append(lfn + 'second/HPC_data.tar.gz.' + str(i))
#SitesList = ['LCG.UKI-NORTHGRID-MAN-HEP.uk', 'LCG.UKI-LT2-IC-HEP.uk', 'LCG.UKI-LT2-QMUL.uk', 'LCG.UKI-NORTHGRID-LANCS-HEP.uk']
#SEList = ['UKI-NORTHGRID-MAN-HEP-disk', 'UKI-LT2-IC-HEP-disk', 'UKI-LT2-QMUL2-disk', 'UKI-NORTHGRID-LANCS-HEP-disk']
SitesList = ['LCG.UKI-NORTHGRID-MAN-HEP.uk']
SEList = ['UKI-NORTHGRID-MAN-HEP-disk']
print("Input data list:\n")
print(inputdata_list)
for i in range(0, total_pixels, chunks):
id_start = i
id_end = i + chunks
dirac = Dirac()
j.setName('CS Faraday Rotation Measurement Reconstruction - Pixels from ' +
str(id_start) + ' to ' + str(id_end - 1))
j.setPlatform('EL7')
j.setTag([str(nprocs) + 'Processors'])
j.setDestination(SitesList)
j.setExecutable('RMSynthesis2.sh',
arguments=str(nprocs) + ' ' + str(id_start) + ' ' +
str(id_end) + ' ' + str(expmnt))
# Input data
j.setInputData(inputdata_list)
j.setInputSandbox([
'RMSynthesis2.sh', 'run2.sh',
'prmon_1.0.1_x86_64-static-gnu72-opt.tar.gz'
])
# Output data
j.setOutputSandbox([
'StdOut', 'StdErr',
'outputtxt_' + str(id_start) + '_' + str(id_end - 1) + '.txt',
