def __init__(self, Conf_Folder, LinesLogHeader_Name):
#Import the library with the fitting algorithms with gaussians
Fitting_Gaussians.__init__(self)
LineMesurer_Log.__init__(self, Conf_Folder, LinesLogHeader_Name)
#Line definition
self.Current_Label = None
self.Current_Ion = None
self.Current_TheoLoc = None
#Textfile where we store our data
self.Current_LinesLog = None
#Vector we use to store the 6 wavelengths which define the emision line location and the two continuums
self.Selections = []
#Indexes for the "Selections vector" wavelengths
self.ind1 = None #Wave1
self.ind2 = None #Wave2
self.ind3 = None #Wave3
self.ind4 = None #Wave4
self.ind5 = None #Wave5
self.ind6 = None #Wave6
#New design
self.BoxSize = 70
#Dictionary to store the data
self.Parameter_dict = OrderedDict.fromkeys(self.ColumnHeaderVector)
#Extra mechanisms for testing the wide component on Halpha
self.force_WD = True
def __init__(self, Conf_Folder, LinesLogHeader_Name):
#Import the library with the fitting algorithms with gaussians
Fitting_Gaussians.__init__(self)
LineMesurer_Log.__init__(self, Conf_Folder, LinesLogHeader_Name)
#Line definition
self.Current_Label = None
self.Current_Ion = None
self.Current_TheoLoc = None
#Textfile where we store our data
self.Current_LinesLog = None
#Without a graphical interface we need a dataframe with the possible blended lines
self.blendedLines_Table()
#New design
self.BoxSize = 70
#Dictionary to store the data
self.Parameter_dict = OrderedDict.fromkeys(self.ColumnHeaderVector)
#Extra mechanisms for testing the wide component on Halpha
self.force_WD = True
#Parameters to save in log #WARNING: Missing emission line type
self.saving_parameters_list = ['Ion',
'lambda_theo',
'lambda_obs',
'flux_intg',
'flux_intg_er',
'flux_gauss',
'flux_gauss_er',
'eqw',
'eqw_er',
'A',
'A_er',
'mu',
'mu_er',
'sigma',
'sigma_er',
'zerolev_mean', #continuum linear value at line region center
'zerolev_std',
'zerolev_width',
'm_zerolev',
'n_zerolev',
'Wave1',
'Wave2',
'Wave3',
'Wave4',
'Wave5',
'Wave6',
'blended_check',
'line_number',
'group_label',
'add_wide_component',
'fit_routine']
def __init__(self, Conf_Folder, LinesLogHeader_Name):
#Import the library with the fitting algorithms with gaussians
Fitting_Gaussians.__init__(self)
LineMesurer_Log.__init__(self, Conf_Folder, LinesLogHeader_Name)
#Line definition
self.Current_Label = None
self.Current_Ion = None
self.Current_TheoLoc = None
#Textfile where we store our data
self.Current_LinesLog = None
#Estimated parameters for Gaussian [A, mu, sigma]
self.p_0 = None
#Predicted parameters for Gaussian [A, mu, sigma]
self.p_1 = None
#Standard deviations for parameters for Gaussian std[A, mu, sigma] only in MCMC methods
self.p_1_stdev = None
#Mean value and deviation for the Gaussian from MCMC
self.p_1_Area_Norm = None
#Line equivalent width
self.EqW = None
#Line parameters from direct integration and classic error
self.Flux_Brute = None
self.SigmaF = None
self.SigmaEW = None
#Line parameters from gaussian fitting
self.Flux_Gauss = None
self.SigmaF_MCMC = None
self.SigmaEW_MCMC = None
#Continuum dispersion
self.SigmaContinuum = None
#Fitted continuum properties
self.Continuum_Gradient = None #Assuming a line this is the gradient (m)
self.Continuum_n = None #Assuming a line this is the y axis interception point (n)
self.ContinuumWidth = None #Number of pixels used in the continuum fitting in both the blue and red regions
self.LocalMedian = None #Fitted continuum value at the peaks wavelength
self.ContinuumFlux = None #Vector with the fitted continuum values in the line region
#Boolean parameters
self.EmissionType = None #True Emission line, False absorption
#Deblending
self.List_BlendedLines = self.BlendedLines_Table()
self.ProceedToDeblend = False
self.Num = None #1 if current line is in the location we are currently measuring
self.Current_BlendedGroup = None #The group of blended lines we are considering
self.Deblend_Check = None #Blended: Line cannot be divided into components. Deblended: Line has been divided into components
self.Lower_Wav_Measured = False #Check for making sure we are only going to measure a line blended if it has the lowest wavelength
self.Current_Blended_Label = None
#Vector we use to store the 6 wavelengths which define the emision line location and the two continuums
self.Selections = []
#Indexes for the "Selections vector" wavelengths
self.ind1 = None #Wave1
self.ind2 = None #Wave2
self.ind3 = None #Wave3
self.ind4 = None #Wave4
self.ind5 = None #Wave5
self.ind6 = None #Wave6
#New design
self.BoxSize = 70
