def test_getData(self):
'''Ensure getData can extract and return correct data as a list of dict'''
sample_reaction = openJson('Unit Tests/sample_brenda_reaction.json')
returned_data = getData(sample_reaction, 'thioredoxin',
DataType.turnover)
for index, entry in enumerate(returned_data):
self.assertDictEqual(returned_data[index],
CopyData.expected_simple_return[index])
def test_get_molecular_weight_data_from_mixed(self):
'''Ensure getData can extract specific activities data as a list of dict'''
sample_reaction = openJson(
'Unit Tests/sample_mixed_brenda_reaction.json')
returned_data = getData(sample_reaction, 'thioredoxin',
DataType.molecular_weight)
for index, entry in enumerate(returned_data):
self.assertDictEqual(
returned_data[index],
CopyData.expected_molecular_weight_return[index])
def toEnzymeStructure_b(data_dict):
'''Converts dictionary structure to DataTreatment.Enzyme based
structure to be able to test data selection functions.'''
organized_data = {}
for enzyme in data_dict:
organized_data[enzyme] = Enzyme(enzyme, '1.1.1.1')
for metabolite in data_dict[enzyme]:
organized_data[enzyme].backward[metabolite] = []
data = getData(data_dict[enzyme], metabolite,
DataType.turnover)
for index, entry in enumerate(data_dict[enzyme][metabolite]):
organized_data[enzyme].backward[metabolite].append(
MetaboliteCandidate(metabolite, **data[index]))
return organized_data