def export2():
for (neuronName, v) in neuron_dict.items():
print('start %s' % neuronName)
if neuronName[:7] == 'mu_bod_' or neuronName != 'VA10': # or neuronName in ('M1', 'RMED', 'PVDR', 'PVDL', 'IL1DL', 'IL1DR', 'I5', ):
continue
(v_list, f_list) = v
entity = Entity()
for vertex in v_list:
v = vertex
entity.add_vertex([round(v[0], 3), round(v[1], 3), round(v[2], 3)])
for face in f_list:
entity.add_face(face)
entity.neuronInfo = neuronName
entity_to_cell(entity, neuronName)
def export2():
for (neuronName, v) in neuron_dict.items():
print('start %s' % neuronName)
if neuronName[:7] == 'mu_bod_' or neuronName != 'VA10': # or neuronName in ('M1', 'RMED', 'PVDR', 'PVDL', 'IL1DL', 'IL1DR', 'I5', ):
continue
(v_list, f_list) = v
entity = Entity()
for vertex in v_list:
v = vertex
entity.add_vertex([round(v[0],3),round(v[1],3),round(v[2],3)])
for face in f_list:
entity.add_face(face)
entity.neuronInfo = neuronName
entity_to_cell(entity, neuronName)
def mesh_to_entity(mesh):
entity = Entity()
for vertex in mesh.vertices:
v = vertex.co
entity.add_vertex([round(v[0], 3), round(v[1], 3), round(v[2], 3)])
for face in mesh.tessfaces:
cordArr = []
for v in face.vertices:
write_log('+', v)
cordArr.append(v)
if len(cordArr) == 3:
cordArr.append(cordArr[0])
write_log('=', cordArr)
entity.add_face(cordArr)
entity.neuronInfo = mesh.materials[0].name
return entity
def mesh_to_entity(mesh):
entity = Entity()
for vertex in mesh.vertices:
v = vertex.co
entity.add_vertex([round(v[0],3),round(v[1],3),round(v[2],3)])
for face in mesh.tessfaces:
cordArr = []
for v in face.vertices:
write_log('+', v)
cordArr.append(v)
if len(cordArr) == 3:
cordArr.append(cordArr[0])
write_log('=', cordArr)
entity.add_face(cordArr)
entity.neuronInfo = mesh.materials[0].name
return entity
def export(scene, neuronName):
'''
Run export motto neurons from blender file
'''
theObjects = scene.objects
i = 0
for object in theObjects:
try:
objType=object.getType()
if objType == "Mesh":
if len(object.getData().materials) > 1:
if( neuroNameFromOds.__contains__(object.name) and
object.name == "PVDR"):# or object.name == "URBL"):#object.getData().materials[0].name != "Motor Neuron"
mm=object.getMatrix()
#pydevd.settrace()
print object.name
entity = Entity()
neuronName = object.name
mesh = object.getData()
for vertex in mesh.verts:
ob_matrix = Mathutils.Matrix(object.getMatrix('worldspace'))
mm = ob_matrix
blenvert = Mathutils.Vector(vertex.co)
v = blenvert * mm
entity.add_vertex([round(v[0],3),round(v[1],3),round(v[2],3)])
for face in mesh.faces:
cordArr = []
for i in range(len(face)):
indx = mesh.verts.index(face[i])
cordArr.append(indx)
entity.add_face(cordArr)
entity.neuronInfo = object.getData().materials[0].name
entity.findCenterOfSoma()
entity.find_point()
create_cell(neuronName,entity)
except Exception:
print "Error: object named %s has problem with accessing an attribute" % object.name
badNeurons.append(object.name)
continue
print list(badNeurons)