def retrieve_data(self):
settings = Settings()
email = settings.value("Email")
tool = quote(settings.applicationName())
if not email:
self.error.emit(
"NCBI requests users of their webservice to identify themselves with an email adress! \n\nPlease set your email in the settings to download data from ncbi!"
)
self.finished.emit()
return
try:
self.information = get_pubmed_information(pmid=self.pmid,
email=email,
tool=tool)
except URLError:
self.error.emit(
"There appears to be a problem with your internet connection!")
except (ValueError, TypeError) as e:
self.error.emit(repr(e))
self.finished.emit()
def __init__(self, mainwindow):
QDialog.__init__(self, mainwindow)
self.setupUi(self)
self.error_dialog = QErrorMessage(self)
self.found_ids = []
self.known_ids = {}
self.known_id_path = None
self.current_index = 0
self.count = 0
self.pmid_thread = QtCore.QThread(self)
self.pmid_worker = RetrievePubmedData()
self.pmid_worker.moveToThread(self.pmid_thread)
self.pmid_thread.started.connect(self.pmid_worker.retrieve_data)
self.pmid_worker.error.connect(self.error_dialog.showMessage)
self.pmid_worker.finished.connect(self.pmid_thread.quit)
self.pmid_worker.finished.connect(self.update_info_from_online)
# Search parameters
settings = Settings()
self.email = settings.value("Email")
self.tool = quote(settings.applicationName())
# Connect slots
self.webView.loadProgress.connect(self.progressBar.setValue)
# Adjust window settings
self.setWindowFlags(QtCore.Qt.Window)
#self.webView.page().setLinkDelegationPolicy(QWebEnginePage.DelegateExternalLinks)
self.webView.setContentsMargins(0, 0, 0, 0)
self.buttonPrevious.setVisible(False)
self.buttonNext.setVisible(False)
self.resultsBox.layout().setContentsMargins(9, 0, 9, 9)
self.resultsBox.hide()
self.adjustSize()
self.load_knowns()