def test_copy_evidence(self):
entity = Reaction()
target = Gene()
eco = "ECO:000000"
assertion = "Presence"
comment = "test comment"
reference = Reference()
evidence = Evidence(entity=entity,
eco=eco,
assertion=assertion,
comment=comment,
target=target)
evidence.add_reference(reference)
# Create copy
copy = evidence.copy()
# Check the correctness of the copy
assert evidence.entity is copy.entity
assert evidence.target is copy.target
assert evidence.eco == copy.eco
assert evidence.assertion == copy.assertion
assert evidence.comment == copy.comment
assert evidence.references == copy.references
assert evidence.references is not copy.references
# Check that the copy is not linked
assert copy not in entity.evidences
assert copy not in reference.linked_items
assert copy not in target.evidences
def test_equality(self):
entity = Reaction()
target = Gene()
eco = "ECO:000000"
assertion = "Presence"
comment = "test comment"
reference = Reference()
evidence = Evidence(entity=entity,
eco=eco,
assertion=assertion,
comment=comment,
target=target)
evidence.add_reference(reference)
assert evidence.copy() == evidence
def test_inequality(self, attribute, new_value):
entity = Reaction()
target = Gene()
eco = "ECO:000000"
assertion = "Presence"
comment = "test comment"
reference = Reference()
evidence = Evidence(entity=entity,
eco=eco,
assertion=assertion,
comment=comment,
target=target)
evidence.add_reference(reference)
new_copy = evidence.copy()
setattr(new_copy, attribute, new_value)
assert new_copy != evidence
assert not new_copy == evidence
def test_inequality_reference(self):
entity = Reaction()
target = Gene()
eco = "ECO:000000"
assertion = "Presence"
comment = "test comment"
reference = Reference()
evidence = Evidence(entity=entity,
eco=eco,
assertion=assertion,
comment=comment,
target=target)
evidence.add_reference(reference)
new_copy = evidence.copy()
new_copy.remove_all_references()
assert new_copy != evidence
assert not new_copy == evidence
