def run_monitor():
print("starting up backend notifications monitor")
def monitoring_callback(*args, **kwargs):
try:
kwargs['originated_in_database']
print('==> got notification from database "%s":' % kwargs['signal'])
except KeyError:
print('==> received signal from client: "%s"' % kwargs['signal'])
del kwargs['signal']
for key in kwargs.keys():
print(' [%s]: %s' % (key, kwargs[key]))
gmDispatcher.connect(receiver = monitoring_callback)
listener = gmBackendListener(conn = gmPG2.get_raw_connection())
print("listening for the following notifications:")
print("1) unspecific:")
for sig in listener.unspecific_notifications:
print(' - %s' % sig)
while True:
pat = gmPersonSearch.ask_for_patient()
if pat is None:
break
print("found patient", pat)
gmPerson.set_active_patient(patient=pat)
print("now waiting for notifications, hit <ENTER> to select another patient")
raw_input()
print("cleanup")
listener.shutdown()
print("shutting down backend notifications monitor")
def run_monitor():
print("starting up backend notifications monitor")
def monitoring_callback(*args, **kwargs):
try:
kwargs['originated_in_database']
print('==> got notification from database "%s":' % kwargs['signal'])
except KeyError:
print('==> received signal from client: "%s"' % kwargs['signal'])
del kwargs['signal']
for key in kwargs.keys():
print(' [%s]: %s' % (key, kwargs[key]))
gmDispatcher.connect(receiver = monitoring_callback)
listener = gmBackendListener(conn = gmPG2.get_raw_connection())
print("listening for the following notifications:")
print("1) unspecific:")
for sig in listener.unspecific_notifications:
print(' - %s' % sig)
while True:
pat = gmPersonSearch.ask_for_patient()
if pat is None:
break
print("found patient", pat)
gmPerson.set_active_patient(patient=pat)
print("now waiting for notifications, hit <ENTER> to select another patient")
raw_input()
print("cleanup")
listener.shutdown()
print("shutting down backend notifications monitor")
def run_importer():
# map data from commandline
try:
date = sys.argv[idx_date]
gsm = sys.argv[idx_gsm]
sms = sys.argv[idx_sms]
pk_patient, weight = sms.split(':::')
except:
return False
# find patient by gsm
# cmd1 = u"select dem.add_external_id_type(%(desc)s, %(org)s)"
# args1 = {'desc': external_id_type, 'org': u'gmSMSImporter.py'}
# cmd2 = u'select pk from dem.enum_ext_id_types where name = %(desc)s'
# rows, idx = gmPG2.run_rw_queries (
# queries = [
# {'cmd': cmd1, 'args': args1},
# {'cmd': cmd2, 'args': args1}
# ],
# return_data = True
# )
# ext_id_pk = rows[0][0]
# cmd = u"""
#select li2id.id_identity
#from dem.lnk_identity2ext_id li2id
#where
# li2id.external_id = %(id)s and
# fk_origin = %(src)s"""
# args = {'id': gsm, 'src': ext_id_pk}
# rows, idx = gmPG2.run_ro_queries (
# queries = [{'cmd': cmd, 'args': args}],
# return_data = True
# )
# if len(rows) == 0:
# print "patient with GSM [%s] not found" % gsm
# return False
# pk_patient = rows[0][0]
gmPerson.set_active_patient(patient = gmPerson.cPerson(aPK_obj = pk_patient))
# ensure structure of EMR
curr_pat = gmPerson.gmCurrentPatient()
emr = curr_pat.get_emr()
epi = emr.add_episode(episode_name = u'Gewichtsmonitoring', is_open = False)
# and import our stuff
narr = emr.add_clin_narrative (
note = weight_template % (dt.datetime.now().strftime('%X'), weight),
soap_cat = soap_cat,
episode = epi
)
return True
def run_importer():
# map data from commandline
try:
date = sys.argv[idx_date]
gsm = sys.argv[idx_gsm]
sms = sys.argv[idx_sms]
pk_patient, weight = sms.split(':::')
except:
return False
# find patient by gsm
# cmd1 = u"select dem.add_external_id_type(%(desc)s, %(org)s)"
# args1 = {'desc': external_id_type, 'org': u'gmSMSImporter.py'}
# cmd2 = u'select pk from dem.enum_ext_id_types where name = %(desc)s'
# rows, idx = gmPG2.run_rw_queries (
# queries = [
# {'cmd': cmd1, 'args': args1},
# {'cmd': cmd2, 'args': args1}
# ],
# return_data = True
# )
# ext_id_pk = rows[0][0]
# cmd = u"""
#select li2id.id_identity
#from dem.lnk_identity2ext_id li2id
#where
# li2id.external_id = %(id)s and
# fk_origin = %(src)s"""
# args = {'id': gsm, 'src': ext_id_pk}
# rows, idx = gmPG2.run_ro_queries (
# queries = [{'cmd': cmd, 'args': args}],
# return_data = True
# )
# if len(rows) == 0:
# print "patient with GSM [%s] not found" % gsm
# return False
# pk_patient = rows[0][0]
gmPerson.set_active_patient(patient=gmPerson.cPerson(aPK_obj=pk_patient))
# ensure structure of EMR
curr_pat = gmPerson.gmCurrentPatient()
emr = curr_pat.emr
epi = emr.add_episode(episode_name='Gewichtsmonitoring', is_open=False)
# and import our stuff
narr = emr.add_clin_narrative(note=weight_template %
(dt.datetime.now().strftime('%X'), weight),
soap_cat=soap_cat,
episode=epi)
return True
def set_active_patient(patient=None, forced_reload=False):
# already active ?
if isinstance(patient, gmPerson.gmCurrentPatient):
return True
if isinstance(patient, gmPerson.cPatient):
if patient['is_deleted']:
_log.error('patient is disabled, will not use as active patient: %s', patient)
return False
elif isinstance(patient, gmPerson.cPerson):
if patient['is_deleted']:
_log.error('patient is disabled, will not use as active patient: %s', patient)
return False
patient = patient.as_patient
elif patient == -1:
pass
else:
# maybe integer ?
success, pk = gmTools.input2int(initial = patient, minval = 1)
if not success:
raise ValueError('<patient> must be either -1, >0, or a cPatient, cPerson or gmCurrentPatient instance, is: %s' % patient)
# but also valid patient ID ?
try:
patient = gmPerson.cPatient(aPK_obj = pk)
except Exception:
_log.exception('error changing active patient to [%s]' % patient)
return False
if not _verify_staff_chart_access(patient = patient):
return False
success = gmPerson.set_active_patient(patient = patient, forced_reload = forced_reload)
if not success:
return False
wx.CallAfter(_do_after_setting_active_patient, patient)
return True
def set_active_patient(patient=None, forced_reload=False):
# already active ?
if isinstance(patient, gmPerson.gmCurrentPatient):
return True
if isinstance(patient, gmPerson.cPatient):
if patient['is_deleted']:
_log.error('patient is disabled, will not use as active patient: %s', patient)
return False
elif isinstance(patient, gmPerson.cPerson):
if patient['is_deleted']:
_log.error('patient is disabled, will not use as active patient: %s', patient)
return False
patient = patient.as_patient
elif patient == -1:
pass
else:
# maybe integer ?
success, pk = gmTools.input2int(initial = patient, minval = 1)
if not success:
raise ValueError('<patient> must be either -1, >0, or a cPatient, cPerson or gmCurrentPatient instance, is: %s' % patient)
# but also valid patient ID ?
try:
patient = gmPerson.cPatient(aPK_obj = pk)
except:
_log.exception('error changing active patient to [%s]' % patient)
return False
if not _verify_staff_chart_access(patient = patient):
return False
success = gmPerson.set_active_patient(patient = patient, forced_reload = forced_reload)
if not success:
return False
wx.CallAfter(_do_after_setting_active_patient, patient)
return True
# return False
# return True
#================================================================
# MAIN
#----------------------------------------------------------------
if __name__ == '__main__':
_log.info("starting SOAP importer...")
try:
# obtain patient
patient = gmPersonSearch.ask_for_patient()
if patient is None:
print "No patient. Exiting gracefully..."
sys.exit(0)
gmPerson.set_active_patient(patient=patient)
# now import
importer = cSOAPImporter()
bundle = [{
soap_bundle_SOAP_CAT_KEY: 's',
soap_bundle_TYPES_KEY: ['Hx'],
soap_bundle_TEXT_KEY: 'Test subjective narrative',
soap_bundle_CLIN_CTX_KEY: {
soap_bundle_EPISODE_ID_KEY: '1'
}
}, {
soap_bundle_SOAP_CAT_KEY: 'o',
soap_bundle_TYPES_KEY: ['Hx'],
soap_bundle_TEXT_KEY: 'Test objective narrative',
soap_bundle_CLIN_CTX_KEY: {
beep=False)
return False
return True
#============================================================
# main
#------------------------------------------------------------
if __name__ == "__main__":
if len(sys.argv) < 2:
sys.exit()
if sys.argv[1] != 'test':
sys.exit()
from Gnumed.pycommon import gmI18N
from Gnumed.pycommon import gmDateTime
gmI18N.activate_locale()
gmI18N.install_domain()
gmDateTime.init()
from Gnumed.business import gmPerson
gmPerson.set_active_patient(patient=gmPerson.cPerson(aPK_obj=12))
arriba = cArriba()
print(arriba)
arriba.run(patient=gmPerson.gmCurrentPatient(), debug=True)
except:
_log.exception('error accessing [%s]', self.pdf_result)
gmDispatcher.send(signal = u'statustext', msg = _('No [arriba] result found in [%s].') % self.pdf_result, beep = False)
return False
return True
#============================================================
# main
#------------------------------------------------------------
if __name__ == "__main__":
if len(sys.argv) < 2:
sys.exit()
if sys.argv[1] != 'test':
sys.exit()
from Gnumed.pycommon import gmI18N
from Gnumed.pycommon import gmDateTime
gmI18N.activate_locale()
gmI18N.install_domain()
gmDateTime.init()
from Gnumed.business import gmPerson
gmPerson.set_active_patient(patient = gmPerson.cPerson(aPK_obj = 12))
arriba = cArriba()
print arriba
arriba.run(patient = gmPerson.gmCurrentPatient(), debug = True)
def test_fd_show_interactions(): gmPerson.set_active_patient(patient = gmPerson.cPerson(aPK_obj = 12)) fd = cFreeDiamsInterface() fd.patient = gmPerson.gmCurrentPatient() fd.check_interactions(substances = fd.patient.emr.get_current_medications())
def test_fd_switch_to(): gmPerson.set_active_patient(patient = gmPerson.cPerson(aPK_obj = 12)) fd = cFreeDiamsInterface() fd.patient = gmPerson.gmCurrentPatient() # fd.switch_to_frontend(blocking = True) fd.import_fd2gm_file_as_drugs(filename = sys.argv[2])
def test_fd_show_interactions(): gmPerson.set_active_patient(patient = gmPerson.cPerson(aPK_obj = 12)) fd = cFreeDiamsInterface() fd.patient = gmPerson.gmCurrentPatient() fd.check_interactions(substances = fd.patient.emr.get_current_medications(include_unapproved = True))
def test_fd_switch_to(): gmPerson.set_active_patient(patient = gmPerson.cPerson(aPK_obj = 12)) fd = cFreeDiamsInterface() fd.patient = gmPerson.gmCurrentPatient() # fd.switch_to_frontend(blocking = True) fd.import_fd2gm_file_as_drugs(filename = sys.argv[2])
