perc_fix = np.zeros((N_sim))
perc_go = np.zeros((N_sim))
stop = True
for n in np.arange(N_sim):
print('SIMULATION ', n + 1)
S_tr, O_tr, _, _, _, _ = data_construction(N=N_trial, perc_training=1)
HER = HER_arch(NL, S, P, learn_rate_vec, learn_rate_memory, beta_vec,
gamma, elig_decay_vec, dic_stim, dic_resp)
E_fix[n, :], E_go[n, :], conv_tr[n] = HER.training_saccade(
S_tr, O_tr, bias, 'softmax', stop)
S_test, O_test, _, _, _, _ = data_construction(N=100, perc_training=1)
perc_fix[n], perc_go[n] = HER.test_saccade(S_test, O_test, bias, 'softmax')
print('\t Percentage of correct fix responses: ', perc_fix[n], '%')
print('\t Percentage of correct go responses: ', perc_go[n], '%')
E_fix_mean = np.mean(np.reshape(E_fix, (-1, 50)), axis=1)
str_err_fix = data_folder + '/HER_long_' + task + 'error_fix_2.txt'
np.savetxt(str_err_fix, E_fix_mean)
E_go_mean = np.mean(np.reshape(E_go, (-1, 50)), axis=1)
str_err_go = data_folder + '/HER_long_' + task + 'error_go_2.txt'
np.savetxt(str_err_go, E_go_mean)
str_conv = data_folder + '/HER_long_' + task + '_conv_2.txt'
np.savetxt(str_conv, conv_tr)
str_err_fix = data_folder + '/HER_long_' + task + '_perc_fix_2.txt'
np.savetxt(str_err_fix, perc_fix)
def HER_task_saccades(params_bool, params_task):
from TASKS.task_saccades import data_construction
task = 'saccade'
np.random.seed(1234)
cues_vec = ['empty', 'P', 'A', 'L', 'R']
pred_vec = ['LC', 'LW', 'FC', 'FW', 'RC', 'RW']
if params_task is None:
#N_trial = 15000
N_trial = 20000
perc_tr = 0.8
else:
N_trial = int(params_task[0]) if params_task[0] != '' else 20000
perc_tr = float(params_task[1]) if params_task[1] != '' else 0.8
S_tr, O_tr, S_test, O_test, dic_stim, dic_resp = data_construction(
N=N_trial, perc_training=perc_tr, model='1')
## CONSTRUCTION OF THE HER MULTI-LEVEL NETWORK
NL = 3 # number of levels (<= 3)
S = np.shape(S_tr)[1] # dimension of the input
P = np.shape(O_tr)[1] # dimension of the prediction vector
### Parameter values come from Table 1 of the Supplementary Material of the paper "Frontal cortex function derives from hierarchical predictive coding", W. Alexander, J. Brown
learn_rate_vec = [0.1, 0.02, 0.02] # learning rates
learn_rate_memory = [0.1, 0.1, 0.1]
beta_vec = [12, 12, 12] # gain parameter for memory dynamics
gamma = 12 # gain parameter for response making
elig_decay_vec = [0.3, 0.5, 0.9] # decay factors for eligibility trace
bias = [0, 0, 0]
gate = 'softmax'
verb = 0
if params_bool is None:
do_training = True
do_test = True
do_weight_plots = True
do_error_plots = True
else:
do_training = params_bool[0]
do_test = params_bool[1]
do_weight_plots = params_bool[2]
do_error_plots = params_bool[3]
HER = HER_arch(NL, S, P, learn_rate_vec, learn_rate_memory, beta_vec,
gamma, elig_decay_vec, dic_stim, dic_resp)
HER.print_HER(False)
#print(S_tr[:20,:])
## TRAINING
data_folder = 'HER/DATA'
N_training = np.around(N_trial * perc_tr).astype(int)
if do_training:
E_fix, E_go, conv_iter = HER.training_saccade(N_training, S_tr, O_tr,
bias, gate)
# save trained model
str_err = data_folder + '/' + task + '_error_fix.txt'
np.savetxt(str_err, E_fix)
str_err = data_folder + '/' + task + '_error_go.txt'
np.savetxt(str_err, E_go)
str_conv = data_folder + '/' + task + '_conv.txt'
np.savetxt(str_conv, conv_iter)
for l in np.arange(NL):
str_mem = data_folder + '/' + task + '_weights_memory_' + str(
l) + '.txt'
np.savetxt(str_mem, HER.H[l].X)
str_pred = data_folder + '/' + task + '_weights_prediction_' + str(
l) + '.txt'
np.savetxt(str_pred, HER.H[l].W)
print("\nSaved model to disk.\n")
else:
str_err = data_folder + '/' + task + '_error_fix.txt'
E_fix = np.loadtxt(str_err)
str_err = data_folder + '/' + task + '_error_go.txt'
E_go = np.loadtxt(str_err)
str_conv = data_folder + '/' + task + '_conv.txt'
conv_iter = np.loadtxt(str_conv)
for l in np.arange(NL):
str_mem = data_folder + '/' + task + '_weights_memory_' + str(
l) + '.txt'
HER.H[l].X = np.loadtxt(str_mem)
str_pred = data_folder + '/' + task + '_weights_prediction_' + str(
l) + '.txt'
HER.H[l].W = np.loadtxt(str_pred)
print("\nLoaded model from disk.\n")
print(
'\n----------------------------------------------------\nTEST\n------------------------------------------------------\n'
)
## TEST
if do_test:
N_test = N_trial - N_training
HER.test_saccade(N_test, S_test, O_test, bias, verb, gate)
print(conv_iter)
## PLOTS
# plot of the memory weights
image_folder = 'HER/IMAGES'
fontTitle = 26
fontTicks = 22
fontLabel = 22
if do_weight_plots:
fig1 = plt.figure(figsize=(10 * NL, 8))
for l in np.arange(NL):
X = HER.H[l].X
plt.subplot(1, NL, l + 1)
plt.pcolor(np.flipud(X), edgecolors='k', linewidths=1)
plt.set_cmap('Blues')
plt.colorbar()
tit = 'MEMORY WEIGHTS: Level ' + str(l)
plt.title(tit, fontweight="bold", fontsize=fontTitle)
plt.xticks(np.linspace(0.5, S - 0.5, S, endpoint=True),
cues_vec,
fontsize=fontTicks)
plt.yticks(np.linspace(0.5, S - 0.5, S, endpoint=True),
np.flipud(cues_vec),
fontsize=fontTicks)
plt.show()
savestr = image_folder + '/' + task + '_weights_memory.png'
if gate == 'free':
savestr = image_folder + '/' + task + '_weights_memory_nomemory.png'
fig1.savefig(savestr)
fig2 = plt.figure(figsize=(10 * NL, 8))
for l in np.arange(NL):
W = HER.H[l].W
plt.subplot(1, NL, l + 1)
plt.pcolor(np.flipud(W), edgecolors='k', linewidths=1)
plt.set_cmap('Blues')
plt.colorbar()
tit = 'PREDICTION WEIGHTS: Level ' + str(l)
plt.title(tit, fontweight="bold", fontsize=fontTitle)
if l == 0:
plt.xticks(np.linspace(0.5,
np.shape(W)[1] - 0.5,
P,
endpoint=True),
pred_vec,
fontsize=fontTicks)
else:
dx = np.shape(W)[1] / (2 * S)
plt.xticks(np.linspace(dx,
np.shape(W)[1] - dx,
S,
endpoint=True),
cues_vec,
fontsize=fontTicks)
plt.yticks(np.linspace(0.5, S - 0.5, S, endpoint=True),
np.flipud(cues_vec),
fontsize=fontTicks)
plt.show()
savestr = image_folder + '/' + task + '_weights_prediction.png'
if gate == 'free':
savestr = image_folder + '/' + task + '_weights_prediction_nomemory.png'
fig2.savefig(savestr)
if do_error_plots:
N = len(E_fix)
bin = round(N * 0.02)
print(bin)
E_fix_bin = np.reshape(E_fix, (-1, bin))
E_fix_bin = np.sum(E_fix_bin, axis=1)
E_fix_cum = np.cumsum(E_fix)
E_fix_norm = 100 * E_fix_cum / (np.arange(N) + 1)
C_fix = np.where(E_fix == 0, 1, 0)
C_fix_cum = 100 * np.cumsum(C_fix) / (np.arange(N) + 1)
E_go_bin = np.reshape(E_go, (-1, bin))
E_go_bin = np.sum(E_go_bin, axis=1)
E_go_cum = np.cumsum(E_go)
E_go_norm = 100 * E_go_cum / (np.arange(N) + 1)
C_go = np.where(E_go == 0, 1, 0)
C_go_cum = 100 * np.cumsum(C_go) / (np.arange(N) + 1)
figE_fix = plt.figure(figsize=(22, 8))
plt.subplot(1, 2, 1)
plt.bar(bin * np.arange(len(E_fix_bin)),
E_fix_bin,
width=bin,
color='blue',
edgecolor='black',
label='fix',
alpha=0.6)
plt.axvline(x=225, linewidth=5, ls='dashed', color='orange')
plt.axvline(x=0, linewidth=5, color='b')
tit = 'SAS: Training Convergence for FIX'
plt.title(tit, fontweight="bold", fontsize=fontTitle)
plt.xlabel('Training Trials', fontsize=fontLabel)
plt.ylabel('Number of Errors per bin', fontsize=fontLabel)
plt.xticks(np.linspace(0, N, 5, endpoint=True), fontsize=fontTicks)
plt.yticks(fontsize=fontTicks)
text = 'Bin = ' + str(bin)
plt.ylim((0, 130))
plt.figtext(x=0.37,
y=0.78,
s=text,
fontsize=fontLabel,
bbox={
'facecolor': 'white',
'alpha': 0.5,
'pad': 10
})
plt.subplot(1, 2, 2)
plt.axvline(x=225, linewidth=5, ls='dashed', color='orange')
plt.plot(np.arange(N),
E_fix_cum,
color='blue',
linewidth=7,
label='fix',
alpha=0.6)
plt.axvline(x=0, linewidth=5, color='b')
tit = 'SAS: Cumulative Training Error for FIX'
plt.title(tit, fontweight="bold", fontsize=fontTitle)
plt.xticks(np.linspace(0, N, 5, endpoint=True), fontsize=fontTicks)
plt.yticks(fontsize=fontTicks)
plt.xlabel('Training Trials', fontsize=fontLabel)
plt.ylabel('Cumulative Error', fontsize=fontLabel)
plt.ylim((0, 550))
plt.show()
savestr = image_folder + '/' + task + '_error_fix.png'
if gate == 'free':
savestr = image_folder + '/' + task + '_error_nomemory_fix.png'
figE_fix.savefig(savestr)
figE_go = plt.figure(figsize=(22, 8))
plt.subplot(1, 2, 1)
plt.bar(bin * np.arange(len(E_go_bin)),
E_go_bin,
width=bin,
color='blue',
edgecolor='black',
alpha=0.6)
plt.axvline(x=4100, linewidth=5, ls='dashed', color='green')
if conv_iter != 0:
plt.axvline(x=conv_iter, linewidth=5, color='b')
tit = 'SAS: Training Convergence for GO'
plt.title(tit, fontweight="bold", fontsize=fontTitle)
plt.xlabel('Training Trials', fontsize=fontLabel)
plt.ylabel('Number of Errors per bin', fontsize=fontLabel)
plt.xticks(np.linspace(0, N, 5, endpoint=True), fontsize=fontTicks)
plt.yticks(fontsize=fontTicks)
text = 'Bin = ' + str(bin)
plt.figtext(x=0.37,
y=0.78,
s=text,
fontsize=fontLabel,
bbox={
'facecolor': 'white',
'alpha': 0.5,
'pad': 10
})
plt.subplot(1, 2, 2)
plt.axvline(x=4100, linewidth=5, ls='dashed', color='green')
plt.plot(np.arange(N), E_go_cum, color='blue', linewidth=7, alpha=0.6)
if conv_iter != 0:
plt.axvline(x=conv_iter, linewidth=5, color='b')
tit = 'SAS: Cumulative Training Error for GO'
plt.title(tit, fontweight="bold", fontsize=fontTitle)
plt.xticks(np.linspace(0, N, 5, endpoint=True), fontsize=fontTicks)
plt.yticks(fontsize=fontTicks)
plt.xlabel('Training Trials', fontsize=fontLabel)
plt.ylabel('Cumulative Error', fontsize=fontLabel)
plt.show()
savestr = image_folder + '/' + task + '_error_go.png'
if gate == 'free':
savestr = image_folder + '/' + task + '_error_nomemory_go.png'
figE_go.savefig(savestr)