def get_options(parser):
parser.add_argument("-p", "--parfile", action="store",
dest="parfile",
type=ImageD11options.ParameterFileType(mode='r'),
help="Name of input parameter file")
parser.add_argument("-u", "--ubifile", action="store",
dest="ubifile",
type=ImageD11options.UbiFileType(mode='r'),
help="Name of ubi file")
parser.add_argument("-U", "--newubifile", action="store",
dest="newubifile",
type=ImageD11options.UbiFileType(mode='w'),
help="Name of new ubi file to output")
parser.add_argument("-f", "--fltfile", action="store",
dest="fltfile",
type=ImageD11options.ColumnFileType(mode='r'),
help="Name of flt file")
parser.add_argument("-F", "--newfltfile", action="store",
dest="newfltfile",
type=ImageD11options.ColumnFileType(mode='w'),
help="Name of flt file containing unindexed peaks")
lattices = ["cubic", "hexagonal", "trigonalH","trigonalP",
"tetragonal", "orthorhombic", "monoclinic_a",
"monoclinic_b","monoclinic_c","triclinic"]
parser.add_argument("-s", "--sym", action="store",
dest="symmetry", # type="choice",
default = "triclinic",
choices = lattices,
help="Lattice symmetry for choosing orientation")
parser.add_argument("-l", "--lattice", action="store",
dest="latticesymmetry", #type="choice",
default = "triclinic",
choices = lattices,
help="Lattice symmetry for choosing orientation from "+
"|".join(lattices))
parser.add_argument("-t", "--tol", action="store",
dest="tol", type=float,
default = 0.25,
help="Tolerance to use in peak assignment, default=%f"%(0.25))
parser.add_argument( "--omega_no_float", action="store_false",
dest = "omega_float",
default = True,
help= "Use exact observed omega values")
parser.add_argument( "--omega_slop", action="store", type=float,
dest = "omega_slop",
default = 0.5,
help= "Omega slop (step) size")
return parser
def get_options(parser):
parser = refinegrains.get_options(parser)
parser.add_argument("-N",
"--notindexed",
action="store",
dest="notindexed",
type=ImageD11options.ColumnFileType(mode='w'),
help="Name of flt file for unindexed peaks")
parser.add_argument("-g",
"--grain",
action="store",
dest="grain",
type=int,
default=None,
help="Which grain to choose")
parser.description = """
Filtergrain should choose the peaks from a filtered
peaks output file according to those which are closest
to a particular grain
"""
return parser