def __init__(self):
Simulation.__init__(self)
# Used by the super save and load function.
self.set_name('sweep')
# Used by the custom simulate and plot function.
self.run_param['pptype'] = 'IClamp'
self.run_param['delay'] = 0
self.run_param['duration'] = 500
self.run_param['amp_start'] = 0.0
self.run_param['amp_end'] = 0.5
self.run_param['sweeps'] = 20
self.run_param['processes'] = 4
self.run_param['elec_dist'] = 20 # um
self.run_param['sigma'] = 0.3
self.run_param['ext_method'] = 'som_as_point'
self.run_param['seed'] = 1234
self.run_param['n_elec'] = 1
self.process_param['amp_option'] = 'both'
self.process_param['pre_dur'] = 4
self.process_param['post_dur'] = 8
self.process_param['threshold'] = 4
self.process_param['threshold_abs_soma'] = 0 # mV
self.process_param['threshold_abs_elec'] = 10 # uV
self.plot_param['use_tex'] = True
self.plot_param['formats'] = ['pdf']
self.verbose = False
def __init__(self):
"""
Typical initialization function, called when a new instance
is created.
"""
# Inherit the LFPyUtil simulation class.
Simulation.__init__(self)
# These values are used by the super class to save and load data.
self.set_name("custom_sim")
# Create some parameters that are used by the simulate method.
self.run_param['delay'] = 100 # ms.
self.run_param['duration'] = 300 # ms.
self.run_param['amp'] = 1.0 # nA.
# Create a parameters used by the plotting function.
self.plot_param['plot_norm'] = True
def __init__(self):
Simulation.__init__(self)
# Used by the super save and load function.
self.set_name('mspike')
# Used by the custom simulate and plot function.
self.run_param['threshold'] = 4
# Absolute threshold for a spike intracellular.
self.run_param['threshold_abs'] = 0 # mV
self.run_param['pptype'] = 'IClamp'
self.run_param['delay'] = 100
self.run_param['duration'] = 300
self.run_param['init_amp'] = 0.1
self.run_param['pre_dur'] = 16.7 * 0.5
self.run_param['post_dur'] = 16.7 * 0.5
self.run_param['spikes'] = 3
self.plot_param['use_tex'] = True
self.apply_electrode_at_finish = True
self.only_apply_electrode = False
self.verbose = False
self._prev_data = None
def __init__(self):
# Inherit the LFPyUtil simulation class.
Simulation.__init__(self)
# These values are used by the super class to save and load data.
self.set_name("custom_sim")