def parse_recipe_template(self):
"""Parses the recipe template file."""
ipkeys = self.input_options.get_sections()
if 'personal_recipe' in ipkeys:
raise MASTError(
self.__class__.__name__,
"Personal recipe section still exists in input.inp. Remove this section and try the command again."
)
return
recipe_file_contents = self.input_options.get_item(
'recipe', 'recipe_file')
parser_obj = RecipeTemplateParser(templateFile=recipe_file_contents,
inputOptions=self.input_options,
personalRecipe=os.path.join(
self.recdir, 'input.inp'),
working_directory=self.recdir)
personal_recipe_list = parser_obj.parse()
#print personal_recipe_list
if not personal_recipe_list:
self.logger.info(
"Within mast/parse_recipe_template: Personal Recipe List is empty. Check whether input.inp has a personal_recipe section!"
)
else:
self.input_options.set_item('personal_recipe',
'personal_recipe_list',
personal_recipe_list)
def test_parse(self):
#ipfile='small_workflow_with_scaling.inp'
ipfile = 'phonon_with_neb.inp'
workdir = os.path.join(testdir, 'workdir')
shutil.copy(os.path.join(testdir, ipfile), workdir)
input_file = os.path.join(workdir, ipfile)
parser_obj = InputParser(inputfile=input_file)
input_options = parser_obj.parse()
recipe_file_contents = input_options.get_item('recipe', 'recipe_file')
myrtp = RecipeTemplateParser(inputOptions=input_options,
working_directory=workdir,
templateFile=recipe_file_contents,
personalRecipe=input_file)
parsed_lines = myrtp.parse()
output_parsed = MASTFile()
output_parsed.data = list(parsed_lines)
output_parsed.to_file('workdir/personal_recipe_test_output.txt')
self.assertEquals(len(myrtp.chunks), 5)
#mypr = MASTFile(pr)
#for line in mypr.data:
# print line.rstrip()
compare_pr = MASTFile(
os.path.join(testdir, 'compare',
'personal_recipe_test_output.txt'))
self.assertEquals(parsed_lines, compare_pr.data)
def parse_recipe_template(self):
"""Parses the recipe template file."""
recipe_file_contents = self.input_options.get_item('recipe', 'recipe_file')
parser_obj = RecipeTemplateParser(templateFile=recipe_file_contents,
inputOptions=self.input_options,
personalRecipe=os.path.join(self.working_directory,'input.inp'),
working_directory=self.working_directory
)
personal_recipe_list = parser_obj.parse()
#print personal_recipe_list
if not personal_recipe_list:
self.logger.info("Within mast/parse_recipe_template: Personal Recipe List is empty. Check whether input.inp has a personal_recipe section!")
else:
self.input_options.set_item('personal_recipe','personal_recipe_list',personal_recipe_list)
def parse_recipe_template(self):
"""Parses the recipe template file."""
ipkeys = self.input_options.get_sections()
if 'personal_recipe' in ipkeys:
raise MASTError(self.__class__.__name__, "Personal recipe section still exists in input.inp. Remove this section and try the command again.")
return
recipe_file_contents = self.input_options.get_item('recipe', 'recipe_file')
parser_obj = RecipeTemplateParser(templateFile=recipe_file_contents,
inputOptions=self.input_options,
personalRecipe=os.path.join(self.recdir,'input.inp'),
working_directory=self.recdir
)
personal_recipe_list = parser_obj.parse()
#print personal_recipe_list
if not personal_recipe_list:
self.logger.info("Within mast/parse_recipe_template: Personal Recipe List is empty. Check whether input.inp has a personal_recipe section!")
else:
self.input_options.set_item('personal_recipe','personal_recipe_list',personal_recipe_list)
def test___init__(self):
raise SkipTest
rt = os.path.join(testdir, 'new_template.txt')
wd = os.path.join(testdir, 'workdir')
iopt = InputOptions()
pr = os.path.join(testdir, 'workdir', 'personal_recipe.txt')
myrtp = RecipeTemplateParser(inputOptions=iopt,
working_directory=wd,
templateFile=rt,
personalRecipe=pr)
self.assertTrue(os.path.isfile, myrtp.metafile)
def parse_recipe_template(self):
"""Parses the recipe template file."""
recipe_file_contents = self.input_options.get_item(
'recipe', 'recipe_file')
parser_obj = RecipeTemplateParser(
templateFile=recipe_file_contents,
inputOptions=self.input_options,
personalRecipe=os.path.join(self.working_directory, 'input.inp'),
working_directory=self.working_directory)
personal_recipe_list = parser_obj.parse()
#print personal_recipe_list
if not personal_recipe_list:
self.logger.info(
"Within mast/parse_recipe_template: Personal Recipe List is empty. Check whether input.inp has a personal_recipe section!"
)
else:
self.input_options.set_item('personal_recipe',
'personal_recipe_list',
personal_recipe_list)
def test_parse(self):
#ipfile='small_workflow_with_scaling.inp'
ipfile='phonon_with_neb.inp'
workdir = os.path.join(testdir,'workdir')
shutil.copy(os.path.join(testdir,ipfile),workdir)
input_file = os.path.join(workdir,ipfile)
parser_obj = InputParser(inputfile=input_file)
input_options = parser_obj.parse()
recipe_file_contents = input_options.get_item('recipe','recipe_file')
myrtp = RecipeTemplateParser(inputOptions=input_options,
working_directory=workdir,
templateFile=recipe_file_contents,
personalRecipe=input_file)
parsed_lines = myrtp.parse()
output_parsed = MASTFile()
output_parsed.data = list(parsed_lines)
output_parsed.to_file('workdir/personal_recipe_test_output.txt')
self.assertEquals(len(myrtp.chunks),5)
#mypr = MASTFile(pr)
#for line in mypr.data:
# print line.rstrip()
compare_pr = MASTFile(os.path.join(testdir,'compare','personal_recipe_test_output.txt'))
self.assertEquals(parsed_lines, compare_pr.data)