def testAddingTaxaExceptionsExisting(patch_write, patch_retr):
def retrDynamicReturn(a, b):
if b == REALNAMES:
return {"felis catus": 1, "panthera tigris": 2}
elif b == EXCEPTIONS:
return {
"panthera tigris": {
"consumer": "family",
"resource": "genus"
}
}
return {}
patch_retr.side_effect = retrDynamicReturn
species = "felis catus"
consumer = "family"
resource = "genus"
instance = Web(path="dir")
instance.add_taxonomic_exception(species, consumer, resource, True)
patch_write.assert_called_with(
"dir",
"reorderedTaxaInteractions",
{
"panthera tigris": {
"consumer": "family",
"resource": "genus"
},
"felis catus": {
"consumer": "family",
"resource": "genus"
},
},
)
def testReplicatingWebBlank(patch_retr):
def retrDynamicReturn(a, b):
if b == REALNAMES:
return {}
elif b == EXCEPTIONS:
return {}
elif b == WEB:
return {IDTRACKER: 0}
elif b == TAXA:
return {}
elif b == LINKS:
return {}
elif b == DATASETS:
return {}
return {}
patch_retr.side_effect = retrDynamicReturn
instance = Web(path="dir")
newWeb = instance.replicateWeb()
assert newWeb.datasetMetas == retrDynamicReturn(1, DATASETS)
assert newWeb.linkMetas == retrDynamicReturn(1, LINKS)
assert newWeb.interactions == retrDynamicReturn(1, WEB)
assert newWeb.stringNames == retrDynamicReturn(1, REALNAMES)
assert newWeb.taxa == retrDynamicReturn(1, TAXA)
def testReplicatingWebExpected(patch_retr):
def retrDynamicReturn(a, b):
if b == REALNAMES:
return {"felis catus": 1, "panthera tigris": 2, "vulpes vulpes": 3}
elif b == EXCEPTIONS:
return {}
elif b == WEB:
return {IDTRACKER: 5, 2: {1: [1, 3], 3: [2]}, 3: {1: [4]}}
elif b == TAXA:
return {
1: {
"family": "felidae"
},
2: {
"family": "felidae"
},
3: {
"family": "canidea"
},
}
elif b == LINKS:
return {1: {"dId": 2}, 2: {"dId": 1}, 3: {"dId": 1}, 4: {"dId": 2}}
elif b == DATASETS:
return {1: {}, 2: {}}
return {}
patch_retr.side_effect = retrDynamicReturn
instance = Web(path="dir")
newWeb = instance.replicateWeb()
assert newWeb.datasetMetas == retrDynamicReturn(1, DATASETS)
assert newWeb.linkMetas == retrDynamicReturn(1, LINKS)
assert newWeb.interactions == retrDynamicReturn(1, WEB)
assert newWeb.stringNames == retrDynamicReturn(1, REALNAMES)
assert newWeb.taxa == retrDynamicReturn(1, TAXA)
def testFilteringByDatasetIdsEmpty(patch_retr):
def retrDynamicReturn(a, b):
if b == REALNAMES:
return {"felis catus": 1, "panthera tigris": 2, "vulpes vulpes": 3}
elif b == EXCEPTIONS:
return {}
elif b == WEB:
return {IDTRACKER: 5, 2: {1: [1, 3], 3: [2]}, 3: {1: [4]}}
elif b == TAXA:
return {
1: {
"family": "felidae"
},
2: {
"family": "felidae"
},
3: {
"family": "canidea"
},
}
elif b == LINKS:
return {1: {"dId": 2}, 2: {"dId": 1}, 3: {"dId": 1}, 4: {"dId": 2}}
elif b == DATASETS:
return {1: {}, 2: {}}
return {}
patch_retr.side_effect = retrDynamicReturn
instance = Web(path="dir")
newWeb = instance.filter_by_dataset_id([])
assert newWeb.datasetMetas == {}
assert newWeb.linkMetas == {}
assert newWeb.interactions == {IDTRACKER: 5}
assert newWeb.stringNames == {}
assert newWeb.taxa == {}
def testFilteringOnTaxa(patch_retr):
def retrDynamicReturn(a, b):
if b == REALNAMES:
return {"felis catus": 1, "panthera tigris": 2, "vulpes vulpes": 3}
elif b == EXCEPTIONS:
return {}
elif b == WEB:
return {IDTRACKER: 5, 2: {1: [1, 3], 3: [2]}, 3: {1: [4]}}
elif b == TAXA:
return {
1: {
"family": "felidae"
},
2: {
"family": "felidae"
},
3: {
"family": "canidea"
},
}
elif b == LINKS:
return {
1: {
"dId": 2,
"evidencedBy": "observation"
},
2: {
"dId": 1,
"evidencedBy": "observation"
},
3: {
"dId": 1
},
4: {
"dId": 2,
"evidencedBy": "inferred"
},
}
elif b == DATASETS:
return {1: {}, 2: {}}
return {}
patch_retr.side_effect = retrDynamicReturn
instance = Web(path="dir")
newWeb = instance.filterByTaxa([("felidae", "family")])
assert newWeb.datasetMetas == {1: {}, 2: {}}
assert newWeb.linkMetas == {
1: {
"dId": 2,
"evidencedBy": "observation"
},
3: {
"dId": 1
},
}
assert newWeb.interactions == {2: {1: [1, 3]}}
assert newWeb.stringNames == {"felis catus": 1, "panthera tigris": 2}
assert newWeb.taxa == {1: {"family": "felidae"}, 2: {"family": "felidae"}}
def testAddingTaxaExceptionsInvalid(patch_write, patch_retr):
def retrDynamicReturn(a, b):
if b == REALNAMES:
return {"felis catus": 1, "panthera tigris": 2}
elif b == EXCEPTIONS:
return {}
return {}
patch_retr.side_effect = retrDynamicReturn
species = "felis"
consumer = "family"
resource = "genus"
instance = Web(path="dir")
with pytest.raises(ValueError):
instance.add_taxonomic_exception(species, consumer, resource, True)