def run_generator_get_query(connection, query):
"""Ultra-efficient cursor for huge amounts of data"""
cursor = SSCursor(connection)
try:
cursor.execute(query)
for row in cursor:
yield row
except Error as e:
print("An Error occurred")
traceback.print_exc()
def write_edges(self, fh, edge_func):
c = SSCursor(self.dbh)
_start = time.time()
c.execute(self.edges_query)
# write the header:
fh.write("*Arcs\r\n")
# I need some duplicate protection
count = 0
res = c.fetchone()
while (res):
(_to, _from, _weight) = res
count += 1
# could call external func here
fh.write("%s %s %f\r\n" % (self.map[_to], self.map[_from],
(_weight or 1)))
if (count % 1000 == 0):
sys.stdout.write('.')
sys.stdout.flush()
# get next record
res = c.fetchone()
# end this function
c.close()
print "\nWrote %i Edges in %f\n" % (count, time.time() - _start)
def write_edges(self, fh, edge_func):
c = SSCursor(self.dbh)
_start = time.time()
c.execute(self.edges_query)
# write the header:
fh.write("*Arcs\r\n")
# I need some duplicate protection
count = 0
res = c.fetchone()
while( res):
(_to, _from, _weight) = res
count +=1
# could call external func here
fh.write("%s %s %f\r\n" %(self.map[_to], self.map[_from], (_weight or 1)))
if(count % 1000 == 0):
sys.stdout.write('.')
sys.stdout.flush()
# get next record
res = c.fetchone()
# end this function
c.close()
print "\nWrote %i Edges in %f\n" %(count, time.time() - _start)
def execute(self, query, args=None):
# The super implementation likes to call nextset() in a loop to
# scroll through anything left dangling. But we promise not to do that
# so we can save some effort.
self.nextset = _noop # pylint:disable=attribute-defined-outside-init
try:
return SSCursor.execute(self, query, args)
finally:
del self.nextset
def import_data(self, limit=None):
'''Import etsa database to given document and segment storage.
Keyword arguments:
limit - if not None, then import only `limit` number of first documents.
'''
self.logger.info('Importing ETSA data. Limit is ' + str(limit))
self._pre_import_data_hook()
cur = SSCursor(self._conn)
cur.execute(self._get_query(limit))
result = cur.fetchone()
numprocessed = 0
while result is not None:
self._process_single(result)
numprocessed += 1
if limit is not None and numprocessed >= limit:
break
result = cur.fetchone()
# TODO: add multithreading
self.logger.info('Processed {0} documents!'.format(numprocessed))
def write_edges(self, fh, edge_func):
c = SSCursor(self.dbh)
_start = time.time()
c.execute(self.edges_query)
# write the header:
fh.write("*Edges\r\n")
# I need some duplicate protection
count = 0
res = c.fetchone()
while( res):
(_to, _from, _weight) = res
count +=1
# check it:
min = _to
max = _from
if(min > max):
min = _from
max = _to
if(self._biglist.matrix[min][max] == 1):
res = c.fetchone()
continue
else:
self._biglist.matrix[min][max] = 1
# could call external func here
fh.write("%s %s %f\r\n" %(self.map[_to], self.map[_from], (_weight or 1)))
if(count % 50 == 0):
sys.stdout.write('.')
sys.stdout.flush()
# get next record
res = c.fetchone()
# end this function
c.close()
print "\nWrote %i Edges in %f\n" %(count, time.time() - _start)
def fetchall(self):
sleep = self.connection.sleep
if sleep is _noop:
return SSCursor.fetchall(self)
result = []
fetch = self.fetchmany # calls _fetch_row with the arraysize
while 1:
# Even if self.rowcount is 0 we must still call
# or we get the connection out of sync.
rows = fetch()
if not rows:
break
result.extend(rows)
if self.rownumber == self.rowcount:
# Avoid a useless extra trip at the end.
break
sleep()
return result
def cursor_factory(conn):
cur = SSCursor(conn) # pylint:disable=too-many-function-args
cur = NeedsFetchallBeforeCloseCursor(cur)
return cur
def cursor_factory(conn):
cur = SSCursor(conn)
cur = NeedsFetchallBeforeCloseCursor(cur)
return cur
if fun2 in [decimal.Decimal, types.FloatType]:
dtype = 'f8'
elif fun2 in [types.IntType, types.LongType]:
dtype = 'i4'
elif fun2 in [types.StringType]:
dtype = '|S%d'%(internal_size,)
descr.append((name, dtype))
return descr
database_and_table, filename = sys.argv[1:]
database_name, table_name = database_and_table.split('.')
connection = MySQLdb.connect(host='imgdb02', user='******',
passwd=getpass.getpass(), db=database_name)
cursor = SSCursor(connection)
cursor.execute('select count(*) from %s' % table_name)
nrows, = cursor.fetchall()[0]
print nrows, 'rows'
cursor.execute('SELECT * from %s' % table_name)
colnames = result_names(cursor)
m = Measurements(filename)
object_names = set(name.split('_', 1)[0]
for name in colnames
if '_' in name)
print 'Object names:', ', '.join(object_names)
columns = []
elif fun2 in [types.IntType, types.LongType]:
dtype = 'i4'
elif fun2 in [types.StringType]:
dtype = '|S%d' % (internal_size, )
descr.append((name, dtype))
return descr
database_and_table, filename = sys.argv[1:]
database_name, table_name = database_and_table.split('.')
connection = MySQLdb.connect(host='imgdb02',
user='******',
passwd=getpass.getpass(),
db=database_name)
cursor = SSCursor(connection)
cursor.execute('select count(*) from %s' % table_name)
nrows, = cursor.fetchall()[0]
print nrows, 'rows'
cursor.execute('SELECT * from %s' % table_name)
colnames = result_names(cursor)
m = Measurements(filename)
object_names = set(name.split('_', 1)[0] for name in colnames if '_' in name)
print 'Object names:', ', '.join(object_names)
columns = []
for i, (name, dtype) in enumerate(result_dtype(cursor)):
if name == 'ImageNumber':
image_number_index = i