def network_exp_with_open_up(
transmissibility,
sigma,
symptomatic_rate,
gamma,
n,
t,
graph,
npis,
t_apply_npi,
t_open_up,
scale=1,
no_npi_nodes=pickle.load(
open("dataset/stable/contact_network/no_npi_nodes.pkl", "rb")),
**kwargs):
model1 = NetworkedSEIR(transmissibility=transmissibility,
sigma=sigma,
symptomatic_rate=symptomatic_rate,
gamma=gamma,
num_days=t,
scale=scale,
no_npi_nodes=no_npi_nodes)
seir = model1.run_open_up_with_readjust(graph,
npis,
t_apply_npi,
t_open_up,
recovered=277,
infected=9,
**kwargs)
return seir
def network_exp_with_seed(transmissibility,
sigma,
symptomatic_rate,
gamma,
n,
t,
graph,
scale=1):
model1 = NetworkedSEIR(transmissibility=transmissibility,
sigma=sigma,
symptomatic_rate=symptomatic_rate,
gamma=gamma,
num_days=t,
scale=scale)
seir = model1.run(graph)
return seir
def network_exp_with_npi(transmissibility,
sigma,
symptomatic_rate,
gamma,
n,
t,
graph,
npis,
t_apply_npi,
scale=1,
no_npi_nodes=pickle.load(
open("no_npi_nodes.pkl", "rb")),
**kwargs):
model1 = NetworkedSEIR(transmissibility=transmissibility,
sigma=sigma,
symptomatic_rate=symptomatic_rate,
gamma=gamma,
num_days=t,
scale=scale,
no_npi_nodes=no_npi_nodes)
seir = model1.run_npi(graph, npis, t_apply_npi, **kwargs)
return seir