def run(self):
print '''
A_7001_13:
'''
global tempRoot;
global mesaDir;
global mesaToolDir;
global dataRoot;
global dcm4CheDir;
self.verifyEnvironment();
testName = 'A_7001_13';
numberOfSeriesPerStudy = 1;
numberOfSOPsPerSeries = 1; # This is the number of dicom images sent per unique series
## Testing Hosts ##
edgeHost = '172.20.175.63'
## PACS Host ##
pacsAeTitle = 'DCM4CHEE';
pacsHost = 'localhost';
pacsPort = '11112';
## MIRTH HL7 Connection
mirthHl7Host = edgeHost;
mirthHl7Port = '20000';
## XDS Clearinghouse Connections
nistScriptDirectory = '/usr/local/tomcat1/bin'
registryURL = 'http://localhost:9080/axis2/services/xdsregistryb';
repositoryURL = 'http://localhost:9080/axis2/services/xdsrepositoryb';
repositoryUID = '1.19.6.24.109.42.1.5';
PATIENT_ID_ASSIGNING_AUTHORITY = '1.3.6.1.4.1.19376.2.840.1.1.1.1';
PATIENT_ID_ASSIGNING_AUTHORITY_TYPE = 'ISO';
testDataDir = dataRoot + '/A-7001/A-7001-01';
baseTest = A_7001_01(testName, tempRoot, dcm4CheDir, mesaDir, mesaToolDir, edgeHost);
## XDS HL7 Connection
xdsHl7JarPath = os.path.normpath(os.getcwd() + '/../util/HL7Receiver.jar');
xdsHl7Port = 9082;
## --------------------------------------------------------- ##
print 'Starting XDS HL7 Receiver'
## --------------------------------------------------------- ##
self.xdsHl7 = HL7ReceiverManager(xdsHl7JarPath, xdsHl7Port, False, False);
if self.xdsHl7.isAnInstanceRunning():
return (False, 'HL7 Receiver already running. Kill process before testing.');
success = self.xdsHl7.startServer();
if not success:
return (False, 'Failed to start HL7 Receiver');
## --------------------------------------------------------- ##
print 'Skip starting NIST Repository as Clearinghouse'
## --------------------------------------------------------- ##
self.nist = NistRepositoryManager(nistScriptDirectory);
## --------------------------------------------------------- ##
print 'Generate unique Study Instance UID'
## --------------------------------------------------------- ##
studyUID = '9999.' + strftime('%Y%m%d%H%M%S', localtime());
## --------------------------------------------------------- ##
print 'Generate dictionary used to fill hl7 message templates'
## --------------------------------------------------------- ##
customFieldsDictionary = baseTest.generateCustomFields(studyUID);
patientName = customFieldsDictionary['PATIENT_NAME'];
print 'patientName:' + patientName;
patientID = customFieldsDictionary['PATIENT_ID'];
print 'patientID:' + patientID;
accessionNumber = customFieldsDictionary['ACCESSION_NUMBER'];
print 'accessionNumber:' + accessionNumber;
studyUID = customFieldsDictionary['STUDY_INSTANCE_UID'];
print 'studyUID:' + studyUID;
# Create test directorys
testTempDir = tempRoot + '/' + accessionNumber;
os.makedirs(testTempDir);
retreivedFilesDirectory = testTempDir + '/retrieved';
os.makedirs(retreivedFilesDirectory);
sentFilesDirectory = testTempDir + '/sent';
os.makedirs(sentFilesDirectory);
## --------------------------------------------------------- ##
print 'Generate ORM HL7 message and send to HL7 receiver - Creates Exam & Patient entries via MIRTH'
## --------------------------------------------------------- ##
status = baseTest.generateAndSendOrm(testDataDir, customFieldsDictionary, mirthHl7Host, mirthHl7Port);
if(status != 'SCHEDULED'):
return (False, 'Failed to schedule exam');
## --------------------------------------------------------- ##
print 'Generate ORU HL7 message and send to HL7 receiver'
## --------------------------------------------------------- ##
status = baseTest.generateAndSendOru(testDataDir, customFieldsDictionary, mirthHl7Host, mirthHl7Port);
if(status != 'FINALIZED'):
return (False, 'Failed to finalize exam');
## --------------------------------------------------------- ##
print 'Prepare DICOM files to with Study, Series, SOP UIDs'
## --------------------------------------------------------- ##
studySeriesSopUIDs = [];
# SeriesUID format - StudyUID.N
# SopUID format - StudyUID.Series.N
# where N is a reasonably unique int
n = int(strftime('%H%M%S', localtime()));
for seriesIndex in range(numberOfSeriesPerStudy):
seriesN = seriesIndex + n;
seriesUID = str(studyUID) + '.' + str(seriesN)
for sopIndex in range(numberOfSOPsPerSeries):
sopN = sopIndex + n;
sopUID = str(seriesUID) + '.'+ str(sopN)
studySeriesSopUIDs.append([studyUID, seriesUID, sopUID]);
success = baseTest.generateCustomDicomFiles(studySeriesSopUIDs, customFieldsDictionary, testDataDir + '/dicom_files/MR.dcm', sentFilesDirectory)
if not success:
return (False, 'Failed to generate custom dicom files');
## --------------------------------------------------------- ##
print 'Send DICOM files to PACS'
## --------------------------------------------------------- ##
baseTest.sendDicomFileToPacs(pacsAeTitle, pacsHost, pacsPort, sentFilesDirectory, customFieldsDictionary);
## --------------------------------------------------------- ##
print 'Instruct EDGE to retrieve DICOM files for pid & accession - Job, JobSet, Transactions entries in rsnadb';
## --------------------------------------------------------- ##
jobID = baseTest.startNewJobAndTransactionOnEdge(patientID, accessionNumber);
## --------------------------------------------------------- ##
print 'Wait for EDGE to fail on communication with Clearinghouse'
## --------------------------------------------------------- ##
statusCode = baseTest.waitForTransactionStatusCode(jobID, -34, 240);
## --------------------------------------------------------- ##
print 'Retrieve XDS documents from Clearinghouse repository'
## --------------------------------------------------------- ##
PATIENT_ID_ASSIGNING_AUTHORITY = '1.3.6.1.4.1.19376.2.840.1.1.1.1';
PATIENT_ID_ASSIGNING_AUTHORITY_TYPE = 'ISO';
singleUsePatientID = EdgeDbManager('rsnadb', edgeHost, 'edge', 'd17bK4#M').getSingleUsePatientID(jobID);
fullPatientID = singleUsePatientID + r'^^^&' + PATIENT_ID_ASSIGNING_AUTHORITY + r'&' + PATIENT_ID_ASSIGNING_AUTHORITY_TYPE;
baseTest.retrieveXdsDocuments(fullPatientID, registryURL, repositoryURL, repositoryUID, retreivedFilesDirectory);
## --------------------------------------------------------- ##
print 'Expect transaction status code -34 and zero matching documents.'
## --------------------------------------------------------- ##
if(statusCode != -34):
return (False, 'Transaction status code set to: ' + str(statusCode));
elif len(os.listdir(retreivedFilesDirectory)) > 0 :
return (False, 'Failed Tests: Unexpected documents retrieved');
else:
print 'Transaction status:', statusCode, 'Zero matching documents retrieved.'
return (True, 'Passed Tests');
def run(self):
print '''
A_7001_04:
'''
global tempRoot
global mesaDir
global mesaToolDir
global dataRoot
global dcm4CheDir
self.verifyEnvironment()
testName = 'A_7001_04'
numberOfSeriesPerStudy = 3
numberOfSOPsPerSeries = 3
# This is the number of dicom images sent per unique series
## Testing Hosts ##
edgeHost = '172.20.175.63'
## PACS Host ##
pacsAeTitle = 'DCM4CHEE'
pacsHost = 'localhost'
pacsPort = '11112'
## MIRTH HL7 Connection
mirthHl7Host = edgeHost
mirthHl7Port = '20000'
## XDS Clearinghouse Connections
nistScriptDirectory = '/usr/local/tomcat1/bin'
registryURL = 'http://localhost:9080/axis2/services/xdsregistryb'
repositoryURL = 'http://localhost:9080/axis2/services/xdsrepositoryb'
repositoryUID = '1.19.6.24.109.42.1.5'
PATIENT_ID_ASSIGNING_AUTHORITY = '1.3.6.1.4.1.19376.2.840.1.1.1.1'
PATIENT_ID_ASSIGNING_AUTHORITY_TYPE = 'ISO'
testDataDir = dataRoot + '/A-7001/A-7001-01'
baseTest = A_7001_01(testName, tempRoot, dcm4CheDir, mesaDir,
mesaToolDir, edgeHost)
## XDS HL7 Connection
xdsHl7JarPath = os.path.normpath(os.getcwd() +
'/../util/HL7Receiver.jar')
xdsHl7Port = 9082
## --------------------------------------------------------- ##
print 'Starting XDS HL7 Receiver'
## --------------------------------------------------------- ##
self.xdsHl7 = HL7ReceiverManager(xdsHl7JarPath, xdsHl7Port, False,
False)
if self.xdsHl7.isAnInstanceRunning():
return (
False,
'HL7 Receiver already running. Kill process before testing.')
success = self.xdsHl7.startServer()
if not success:
return (False, 'Failed to start HL7 Receiver')
## --------------------------------------------------------- ##
print 'Starting NIST Repository as Clearinghouse'
## --------------------------------------------------------- ##
self.nist = NistRepositoryManager(nistScriptDirectory)
success = self.nist.startServer()
if not success:
return (False, 'Failed to start NIST Repository')
## --------------------------------------------------------- ##
print 'Generate unique Study Instance UID'
## --------------------------------------------------------- ##
studyUID = '9999.' + strftime('%Y%m%d%H%M%S', localtime())
## --------------------------------------------------------- ##
print 'Generate dictionary used to fill hl7 message templates'
## --------------------------------------------------------- ##
customFieldsDictionary = baseTest.generateCustomFields(studyUID)
patientName = customFieldsDictionary['PATIENT_NAME']
print 'patientName:' + patientName
patientID = customFieldsDictionary['PATIENT_ID']
print 'patientID:' + patientID
accessionNumber = customFieldsDictionary['ACCESSION_NUMBER']
print 'accessionNumber:' + accessionNumber
studyUID = customFieldsDictionary['STUDY_INSTANCE_UID']
print 'studyUID:' + studyUID
# Create test directorys
testTempDir = tempRoot + '/' + accessionNumber
os.makedirs(testTempDir)
retreivedFilesDirectory = testTempDir + '/retrieved'
os.makedirs(retreivedFilesDirectory)
sentFilesDirectory = testTempDir + '/sent'
os.makedirs(sentFilesDirectory)
## --------------------------------------------------------- ##
print 'Generate ORM HL7 message and send to HL7 receiver - Creates Exam & Patient entries via MIRTH'
## --------------------------------------------------------- ##
status = baseTest.generateAndSendOrm(testDataDir,
customFieldsDictionary,
mirthHl7Host, mirthHl7Port)
if (status != 'SCHEDULED'):
return (False, 'Failed to schedule exam')
## --------------------------------------------------------- ##
print 'Generate ORU HL7 message and send to HL7 receiver'
## --------------------------------------------------------- ##
status = baseTest.generateAndSendOru(testDataDir,
customFieldsDictionary,
mirthHl7Host, mirthHl7Port)
if (status != 'FINALIZED'):
return (False, 'Failed to finalize exam')
## --------------------------------------------------------- ##
print 'Prepare DICOM files to with Study, Series, SOP UIDs'
## --------------------------------------------------------- ##
studySeriesSopUIDs = []
# SeriesUID format - StudyUID.N
# SopUID format - StudyUID.Series.N
# where N is a reasonably unique int
n = int(strftime('%H%M%S', localtime()))
for seriesIndex in range(numberOfSeriesPerStudy):
seriesN = seriesIndex + n
seriesUID = str(studyUID) + '.' + str(seriesN)
for sopIndex in range(numberOfSOPsPerSeries):
sopN = sopIndex + n
sopUID = str(seriesUID) + '.' + str(sopN)
studySeriesSopUIDs.append([studyUID, seriesUID, sopUID])
success = baseTest.generateCustomDicomFiles(
studySeriesSopUIDs, customFieldsDictionary,
testDataDir + '/dicom_files/MR.dcm', sentFilesDirectory)
if not success:
return (False, 'Failed to generate custom dicom files')
## --------------------------------------------------------- ##
print 'Send DICOM files to PACS'
## --------------------------------------------------------- ##
baseTest.sendDicomFileToPacs(pacsAeTitle, pacsHost, pacsPort,
sentFilesDirectory,
customFieldsDictionary)
## --------------------------------------------------------- ##
print 'Instruct EDGE to retrieve DICOM files for pid & accession - Job, JobSet, Transactions entries in rsnadb'
## --------------------------------------------------------- ##
jobID = baseTest.startNewJobAndTransactionOnEdge(
patientID, accessionNumber)
## --------------------------------------------------------- ##
print 'Wait for EDGE to complete transfer to Clearinghouse'
## --------------------------------------------------------- ##
statusCode = baseTest.waitForCompletedXdsXfer(jobID, 240)
if (statusCode != 40):
return (False,
'Transaction status code set to: ' + str(statusCode))
## --------------------------------------------------------- ##
print 'Retrieve XDS documents from Clearinghouse repository'
## --------------------------------------------------------- ##
PATIENT_ID_ASSIGNING_AUTHORITY = '1.3.6.1.4.1.19376.2.840.1.1.1.1'
PATIENT_ID_ASSIGNING_AUTHORITY_TYPE = 'ISO'
singleUsePatientID = EdgeDbManager(
'rsnadb', edgeHost, 'edge',
'd17bK4#M').getSingleUsePatientID(jobID)
fullPatientID = singleUsePatientID + r'^^^&' + PATIENT_ID_ASSIGNING_AUTHORITY + r'&' + PATIENT_ID_ASSIGNING_AUTHORITY_TYPE
baseTest.retrieveXdsDocuments(fullPatientID, registryURL,
repositoryURL, repositoryUID,
retreivedFilesDirectory)
if len(os.listdir(retreivedFilesDirectory)) == 0:
return (False, 'Zero documents retrieved')
## --------------------------------------------------------- ##
print 'Validate retrieved documents'
## --------------------------------------------------------- ##
success = baseTest.validateRetrievedMetaDataLegality(
retreivedFilesDirectory)
if not success:
return (False, "Failed due to illegal meta-data.")
success = baseTest.validateRetrievedMetaDataMatch(
retreivedFilesDirectory, customFieldsDictionary)
if not success:
return (False, "Failed due to meta-data mismatch.")
success = baseTest.validateDcmSentDcmRetrievedBinaryMatch(
sentFilesDirectory, retreivedFilesDirectory)
if not success:
return (False,
"Failed due to sent-retrieved file binary mismatch.")
success = baseTest.validateKosDcmMatch(retreivedFilesDirectory)
if not success:
return (False, "Failed due to manifest - retrieved file mismatch.")
return (True, 'Passed Tests')
def run(self):
print '''
A_5001_X8:
Designed to run 7001-02 test as normal, with a breakpoint substituted
for the job start code. This should be completed with the token app.
Afterward, this code should be allowed to complete.
'''
global tempRoot;
global mesaDir;
global mesaToolDir;
global dataRoot;
global dcm4CheDir;
self.verifyEnvironment();
testName = 'A_5001_X8';
numberOfSeriesPerStudy = 2;
numberOfSOPsPerSeries = 2; # This is the number of dicom images sent per unique series
## Testing Hosts ##
edgeHost = '172.20.175.61'
## PACS Host ##
pacsAeTitle = 'DCM4CHEE';
pacsHost = 'localhost';
pacsPort = '11112';
## MIRTH HL7 Connection
mirthHl7Host = edgeHost;
mirthHl7Port = '20000';
## XDS Clearinghouse Connections
nistScriptDirectory = '/usr/local/tomcat1/bin'
registryURL = 'http://localhost:9080/axis2/services/xdsregistryb';
repositoryURL = 'http://localhost:9080/axis2/services/xdsrepositoryb';
repositoryUID = '1.19.6.24.109.42.1.5';
PATIENT_ID_ASSIGNING_AUTHORITY = '1.3.6.1.4.1.19376.2.840.1.1.1.1';
PATIENT_ID_ASSIGNING_AUTHORITY_TYPE = 'ISO';
testDataDir = dataRoot + '/A-7001/A-7001-01';
baseTest = A_7001_01(testName, tempRoot, dcm4CheDir, mesaDir, mesaToolDir, edgeHost);
## XDS HL7 Connection
xdsHl7JarPath = os.path.normpath(os.getcwd() + '/../util/HL7Receiver.jar');
xdsHl7Port = 9082;
## --------------------------------------------------------- ##
print 'Starting XDS HL7 Receiver'
## --------------------------------------------------------- ##
self.xdsHl7 = HL7ReceiverManager(xdsHl7JarPath, xdsHl7Port, False, False);
if self.xdsHl7.isAnInstanceRunning():
return (False, 'HL7 Receiver already running. Kill process before testing.');
success = self.xdsHl7.startServer();
if not success:
return (False, 'Failed to start HL7 Receiver');
## --------------------------------------------------------- ##
print 'Starting NIST Repository as Clearinghouse'
## --------------------------------------------------------- ##
self.nist = NistRepositoryManager(nistScriptDirectory);
success = self.nist.startServer();
if not success:
return (False, 'Failed to start NIST Repository');
## --------------------------------------------------------- ##
print 'Generate unique Study Instance UID'
## --------------------------------------------------------- ##
studyUID = '9999.' + strftime('%Y%m%d%H%M%S', localtime());
## --------------------------------------------------------- ##
print 'Generate dictionary used to fill hl7 message templates'
## --------------------------------------------------------- ##
customFieldsDictionary = baseTest.generateCustomFields(studyUID);
patientName = customFieldsDictionary['PATIENT_NAME'];
print 'patientName:' + patientName;
patientID = customFieldsDictionary['PATIENT_ID'];
print 'patientID:' + patientID;
accessionNumber = customFieldsDictionary['ACCESSION_NUMBER'];
print 'accessionNumber:' + accessionNumber;
studyUID = customFieldsDictionary['STUDY_INSTANCE_UID'];
print 'studyUID:' + studyUID;
# Create test directorys
testTempDir = tempRoot + '/' + accessionNumber;
os.makedirs(testTempDir);
retreivedFilesDirectory = testTempDir + '/retrieved';
os.makedirs(retreivedFilesDirectory);
sentFilesDirectory = testTempDir + '/sent';
os.makedirs(sentFilesDirectory);
## --------------------------------------------------------- ##
print 'Generate ORM HL7 message and send to HL7 receiver - Creates Exam & Patient entries via MIRTH'
## --------------------------------------------------------- ##
status = baseTest.generateAndSendOrm(testDataDir, customFieldsDictionary, mirthHl7Host, mirthHl7Port);
if(status != 'SCHEDULED'):
return (False, 'Failed to schedule exam');
## --------------------------------------------------------- ##
print 'Generate ORU HL7 message and send to HL7 receiver'
## --------------------------------------------------------- ##
status = baseTest.generateAndSendOru(testDataDir, customFieldsDictionary, mirthHl7Host, mirthHl7Port);
if(status != 'FINALIZED'):
return (False, 'Failed to finalize exam');
## --------------------------------------------------------- ##
print 'Prepare DICOM files to with Study, Series, SOP UIDs'
## --------------------------------------------------------- ##
studySeriesSopUIDs = [];
# SeriesUID format - StudyUID.N
# SopUID format - StudyUID.Series.N
# where N is a reasonably unique int
n = int(strftime('%H%M%S', localtime()));
for seriesIndex in range(numberOfSeriesPerStudy):
seriesN = seriesIndex + n;
seriesUID = str(studyUID) + '.' + str(seriesN)
for sopIndex in range(numberOfSOPsPerSeries):
sopN = sopIndex + n;
sopUID = str(seriesUID) + '.'+ str(sopN)
studySeriesSopUIDs.append([studyUID, seriesUID, sopUID]);
success = baseTest.generateCustomDicomFiles(studySeriesSopUIDs, customFieldsDictionary, testDataDir + '/dicom_files/CT.dcm', sentFilesDirectory)
if not success:
return (False, 'Failed to generate custom dicom files');
## --------------------------------------------------------- ##
print 'Send DICOM files to PACS'
## --------------------------------------------------------- ##
baseTest.sendDicomFileToPacs(pacsAeTitle, pacsHost, pacsPort, sentFilesDirectory, customFieldsDictionary);
## --------------------------------------------------------- ##
print 'Insert breakpoint, wait for transaction status to change to 40';
## --------------------------------------------------------- ##
print 'patientName:' + patientName;
print 'patientID:' + patientID;
print 'accessionNumber:' + accessionNumber;
print 'studyUID:' + studyUID;
return (True, 'Passed Tests');
