def assign_delegates(self): self.view.setItemDelegateForColumn( self.Header.islocal, gui.IndicatorItemDelegate(self, role=Qt.DisplayRole)) self.view.setItemDelegateForColumn( self.Header.size, Orange.widgets.data.owdatasets.SizeDelegate(self)) self.view.setItemDelegateForColumn( self.Header.instances, Orange.widgets.data.owdatasets.NumericalDelegate(self)) self.view.setItemDelegateForColumn( self.Header.variables, Orange.widgets.data.owdatasets.NumericalDelegate(self))
def __init__(self): super().__init__() self.local_cache_path = os.path.join(data_dir(), self.DATASET_DIR) self.__awaiting_state = None # type: Optional[_FetchState] box = gui.widgetBox(self.controlArea, "Info") self.infolabel = QLabel(text="Initializing...\n\n") box.layout().addWidget(self.infolabel) gui.widgetLabel(self.mainArea, "Filter") self.filterLineEdit = QLineEdit( textChanged=self.filter ) self.mainArea.layout().addWidget(self.filterLineEdit) self.splitter = QSplitter(orientation=Qt.Vertical) self.view = QTreeView( sortingEnabled=True, selectionMode=QTreeView.SingleSelection, alternatingRowColors=True, rootIsDecorated=False, editTriggers=QTreeView.NoEditTriggers, ) box = gui.widgetBox(self.splitter, "Description", addToLayout=False) self.descriptionlabel = QLabel( wordWrap=True, textFormat=Qt.RichText, ) self.descriptionlabel = QTextBrowser( openExternalLinks=True, textInteractionFlags=(Qt.TextSelectableByMouse | Qt.LinksAccessibleByMouse) ) self.descriptionlabel.setFrameStyle(QTextBrowser.NoFrame) # no (white) text background self.descriptionlabel.viewport().setAutoFillBackground(False) box.layout().addWidget(self.descriptionlabel) self.splitter.addWidget(self.view) self.splitter.addWidget(box) self.splitter.setSizes([300, 200]) self.splitter.splitterMoved.connect( lambda: setattr(self, "splitter_state", bytes(self.splitter.saveState())) ) self.mainArea.layout().addWidget(self.splitter) self.controlArea.layout().addStretch(10) gui.auto_commit(self.controlArea, self, "auto_commit", "Send Data") model = QStandardItemModel(self) model.setHorizontalHeaderLabels(HEADER) proxy = QSortFilterProxyModel() proxy.setSourceModel(model) proxy.setFilterKeyColumn(-1) proxy.setFilterCaseSensitivity(False) self.view.setModel(proxy) if self.splitter_state: self.splitter.restoreState(self.splitter_state) self.view.setItemDelegateForColumn( Header.Size, SizeDelegate(self)) self.view.setItemDelegateForColumn( Header.Local, gui.IndicatorItemDelegate(self, role=Qt.DisplayRole)) self.view.setItemDelegateForColumn( Header.Instances, NumericalDelegate(self)) self.view.setItemDelegateForColumn( Header.Variables, NumericalDelegate(self)) self.view.resizeColumnToContents(Header.Local) if self.header_state: self.view.header().restoreState(self.header_state) self.setBlocking(True) self.setStatusMessage("Initializing") self._executor = ThreadPoolExecutor(max_workers=1) f = self._executor.submit(self.list_remote) w = FutureWatcher(f, parent=self) w.done.connect(self.__set_index)
def __init__(self, parent=None): super().__init__(parent) self.servers = [ ('https://dictyexpress.research.bcm.edu/', 'dictyExpress'), ('https://cloud.genialis.com/', 'Genialis'), ] self.selectedExperiments = [] self.buffer = dicty.CacheSQLite(bufferfile) self.searchString = "" self.items = [] self.result_types = [] self.controlArea.setMaximumWidth(250) self.controlArea.setMinimumWidth(250) box = gui.widgetBox(self.controlArea, 'Project') self.projectCB = gui.comboBox(box, self, "projecti", items=[], callback=self.ProjectChosen) self.projects = [] b = gui.widgetBox(self.controlArea, "Selection bookmarks") self.selectionSetsWidget = SelectionSetsWidget(self) self.selectionSetsWidget.setSizePolicy(QSizePolicy.Preferred, QSizePolicy.Maximum) def store_selections(modified): if not modified: self.storedSelections = self.selectionSetsWidget.selections self.selectionSetsWidget.selectionModified.connect(store_selections) b.layout().addWidget(self.selectionSetsWidget) gui.separator(self.controlArea) b = gui.widgetBox(self.controlArea, "Sort output columns") self.columnsSortingWidget = SortedListWidget(self) self.columnsSortingWidget.setSizePolicy(QSizePolicy.Preferred, QSizePolicy.Maximum) box = gui.widgetBox(self.controlArea, 'Experiment name') self.experimentNameCB = gui.comboBox(box, self, "exnamei", items=SORTING_MODEL_LIST) b.layout().addWidget(self.columnsSortingWidget) sorting_model = QStringListModel(SORTING_MODEL_LIST) self.columnsSortingWidget.setModel(sorting_model) self.columnsSortingWidget.sortingOrder = self.storedSortOrder def store_sort_order(): self.storedSortOrder = self.columnsSortingWidget.sortingOrder self.columnsSortingWidget.sortingOrderChanged.connect(store_sort_order) gui.separator(self.controlArea) box = gui.widgetBox(self.controlArea, 'Expression Type') self.expressionTypesCB = gui.comboBox(box, self, "rtypei", items=[], callback=self.UpdateResultsList) gui.checkBox(self.controlArea, self, "excludeconstant", "Exclude labels with constant values") gui.checkBox(self.controlArea, self, "joinreplicates", "Average replicates (use median)") gui.checkBox(self.controlArea, self, "log2", "Logarithmic (base 2) transformation") gui.checkBox(self.controlArea, self, "transpose", "Genes as columns") self.commit_button = gui.button(self.controlArea, self, "&Commit", callback=self.Commit) self.commit_button.setDisabled(True) gui.rubber(self.controlArea) box = gui.widgetBox(self.controlArea, 'Server') gui.comboBox(box, self, "serveri", items=[title for url, title in self.servers], callback=self.ServerChosen) gui.lineEdit(box, self, "username", "Username:"******"password", "Password:"******"Clear cache", callback=self.clear_cache) gui.lineEdit(self.mainArea, self, "searchString", "Search", callbackOnType=True, callback=self.SearchUpdate) self.headerLabels = [t[1] for t in HEADER] self.experimentsWidget = QTreeWidget() self.experimentsWidget.setHeaderLabels(self.headerLabels) self.experimentsWidget.setSelectionMode(QTreeWidget.ExtendedSelection) self.experimentsWidget.setRootIsDecorated(False) self.experimentsWidget.setSortingEnabled(True) contextEventFilter = gui.VisibleHeaderSectionContextEventFilter( self.experimentsWidget, self.experimentsWidget) self.experimentsWidget.header().installEventFilter(contextEventFilter) self.experimentsWidget.setItemDelegateForColumn( 0, gui.IndicatorItemDelegate(self, role=Qt.DisplayRole)) self.experimentsWidget.setAlternatingRowColors(True) self.experimentsWidget.selectionModel().selectionChanged.connect( self.onSelectionChanged) self.selectionSetsWidget.setSelectionModel( self.experimentsWidget.selectionModel()) self.selectionSetsWidget.setSelections(self.storedSelections) self.mainArea.layout().addWidget(self.experimentsWidget) self.restoreHeaderState() self.experimentsWidget.header().geometriesChanged.connect( self.saveHeaderState) self.dbc = None self.AuthSet() QTimer.singleShot(100, self.ConnectAndUpdate)
def __init__(self): super().__init__() self.res = None self.organism = '44689' self.server = 'https://dictyexpress.research.bcm.edu' self.headerLabels = [x[1] for x in Labels] self.searchString = "" self.items = [] self.progress_bar = None # threads self.threadpool = QThreadPool() # Login Section box = gui.widgetBox(self.controlArea, 'Login') self.namefield = gui.lineEdit(box, self, "username", "Username:"******"password", "Password:"******"Output", addSpace=True) gui.radioButtonsInBox(box, self, "gene_as_attr_name", ["Genes in rows", "Genes in columns"], callback=self.invalidate) self.controlArea.layout().addWidget(h_line()) self.refresh_button = gui.button(self.controlArea, self, "Refresh", callback=self.refresh) self.handle_cache_button(True) gui.rubber(self.controlArea) self.commit_button = gui.auto_commit(self.controlArea, self, "auto_commit", "&Commit", box=False) # Experiment Section label = QLabel("Available projects:") my_font = QFont() my_font.setBold(True) label.setFont(my_font) self.mainArea.layout().addWidget(label) self.mainArea.layout().addWidget(h_line()) self.filter = gui.lineEdit(self.mainArea, self, "searchString", "Filter:", callbackOnType=True, callback=self.search_update) self.experimentsWidget = QTreeWidget(alternatingRowColors=True, rootIsDecorated=False, uniformRowHeights=True, sortingEnabled=True) self.experimentsWidget.setItemDelegateForColumn( 0, gui.IndicatorItemDelegate(self, role=Qt.DisplayRole)) self.experimentsWidget.selectionModel().selectionChanged.connect( self.on_selection_changed) self.experimentsWidget.setHeaderLabels(self.headerLabels) self.mainArea.layout().addWidget(self.experimentsWidget) self.auth_set() self.connect() self.sizeHint()
def __init__(self, parent=None, signalManager=None, name=" GEO Data Sets"): OWWidget.__init__(self, parent, signalManager, name) self.selectionChanged = False self.filterString = "" self.datasetName = "" ## GUI box = gui.widgetBox(self.controlArea, "Info", addSpace=True) self.infoBox = gui.widgetLabel(box, "Initializing\n\n") box = gui.widgetBox(self.controlArea, "Output", addSpace=True) gui.radioButtonsInBox(box, self, "outputRows", ["Genes in rows", "Samples in rows"], "Rows", callback=self.commitIf) gui.checkBox(box, self, "mergeSpots", "Merge spots of same gene", callback=self.commitIf) gui.separator(box) self.nameEdit = gui.lineEdit( box, self, "datasetName", "Data set name", tooltip="Override the default output data set name", callback=self.onNameEdited) self.nameEdit.setPlaceholderText("") if sys.version_info < (3, ): box = gui.widgetBox(self.controlArea, "Commit", addSpace=True) self.commitButton = gui.button(box, self, "Commit", callback=self.commit) cb = gui.checkBox(box, self, "autoCommit", "Commit on any change") gui.setStopper(self, self.commitButton, cb, "selectionChanged", self.commit) else: gui.auto_commit(self.controlArea, self, "autoCommit", "Commit", box="Commit") self.commitIf = self.commit gui.rubber(self.controlArea) gui.widgetLabel(self.mainArea, "Filter") self.filterLineEdit = QLineEdit(textChanged=self.filter) self.completer = TokenListCompleter(self, caseSensitivity=Qt.CaseInsensitive) self.filterLineEdit.setCompleter(self.completer) self.mainArea.layout().addWidget(self.filterLineEdit) splitter = QSplitter(Qt.Vertical, self.mainArea) self.mainArea.layout().addWidget(splitter) self.treeWidget = QTreeView(splitter) self.treeWidget.setSelectionMode(QTreeView.SingleSelection) self.treeWidget.setRootIsDecorated(False) self.treeWidget.setSortingEnabled(True) self.treeWidget.setAlternatingRowColors(True) self.treeWidget.setUniformRowHeights(True) self.treeWidget.setEditTriggers(QTreeView.NoEditTriggers) linkdelegate = gui.LinkStyledItemDelegate(self.treeWidget) self.treeWidget.setItemDelegateForColumn(1, linkdelegate) self.treeWidget.setItemDelegateForColumn(8, linkdelegate) self.treeWidget.setItemDelegateForColumn( 0, gui.IndicatorItemDelegate(self.treeWidget, role=Qt.DisplayRole)) proxyModel = MySortFilterProxyModel(self.treeWidget) self.treeWidget.setModel(proxyModel) self.treeWidget.selectionModel().selectionChanged.connect( self.updateSelection) self.treeWidget.viewport().setMouseTracking(True) splitterH = QSplitter(Qt.Horizontal, splitter) box = gui.widgetBox(splitterH, "Description") self.infoGDS = gui.widgetLabel(box, "") self.infoGDS.setWordWrap(True) gui.rubber(box) box = gui.widgetBox(splitterH, "Sample Annotations") self.annotationsTree = QTreeWidget(box) self.annotationsTree.setHeaderLabels( ["Type (Sample annotations)", "Sample count"]) self.annotationsTree.setRootIsDecorated(True) box.layout().addWidget(self.annotationsTree) self.annotationsTree.itemChanged.connect( self.annotationSelectionChanged) self._annotationsUpdating = False self.splitters = splitter, splitterH for sp, setting in zip(self.splitters, self.splitterSettings): sp.splitterMoved.connect(self.splitterMoved) sp.restoreState(setting) self.searchKeys = [ "dataset_id", "title", "platform_organism", "description" ] self.gds = [] self.gds_info = None self.resize(1000, 600) self.setBlocking(True) self.setEnabled(False) self.progressBarInit() self._executor = ThreadExecutor() func = partial(get_gds_model, methodinvoke(self, "_setProgress", (float, ))) self._inittask = Task(function=func) self._inittask.finished.connect(self._initializemodel) self._executor.submit(self._inittask) self._datatask = None
def __init__(self): super().__init__() self.res = None self.server = 'https://dictyexpress.research.bcm.edu' self.headerLabels = [x[1] for x in Labels] self.searchString = "" self.items = [] self.lastSelected = None # store last selected customTreeItem # Login Section box = gui.widgetBox(self.controlArea, 'Login') self.namefield = gui.lineEdit(box, self, "username", "Username:"******"password", "Password:"******"setTimeVariable", "Set Time variable") self.time_var_checkBox.setToolTip('Create new column where each row represents one time point') self.controlArea.layout().addWidget(h_line()) self.commit_button = gui.button(self.controlArea, self, "Commit", callback=self.commit) self.handle_commit_button(False) self.refresh_button = gui.button(self.controlArea, self, "Refresh", callback=self.refresh) self.handle_cache_button(True) gui.rubber(self.controlArea) # Experiment Section label = QLabel("Available projects:") my_font = QFont() my_font.setBold(True) label.setFont(my_font) self.mainArea.layout().addWidget(label) self.mainArea.layout().addWidget(h_line()) self.filter = gui.lineEdit(self.mainArea, self, "searchString", "Filter:", callbackOnType=True, callback=self.search_update) self.experimentsWidget = QTreeWidget(alternatingRowColors=True, rootIsDecorated=False, uniformRowHeights=True, sortingEnabled=True) self.experimentsWidget.setItemDelegateForColumn( 0, gui.IndicatorItemDelegate(self, role=Qt.DisplayRole)) self.experimentsWidget.selectionModel().selectionChanged.connect( self.onSelectionChanged) self.experimentsWidget.setHeaderLabels(self.headerLabels) self.mainArea.layout().addWidget(self.experimentsWidget) if self.username and self.password: self.connect()
def __init__(self): super().__init__() ConcurrentWidgetMixin.__init__(self) self._res: Optional[genapi.GenAPI] = None self.organism = '44689' self.server = 'https://dictyexpress.research.bcm.edu' self.headerLabels = [x[1] for x in Labels] self.searchString = "" self.items = [] self.genapi_pub_auth = { 'url': genapi.DEFAULT_URL, 'username': genapi.DEFAULT_EMAIL, 'password': genapi.DEFAULT_PASSWD, } # Login Section box = gui.widgetBox(self.controlArea, 'Sign in') self.user_info = gui.label(box, self, '') self.server_info = gui.label(box, self, '') box = gui.widgetBox(box, orientation=Qt.Horizontal) self.sign_in_btn = gui.button(box, self, 'Sign In', callback=self.sign_in, autoDefault=False) self.sign_out_btn = gui.button(box, self, 'Sign Out', callback=self.sign_out, autoDefault=False) box = gui.widgetBox(self.controlArea, "Output") gui.radioButtonsInBox(box, self, "gene_as_attr_name", ["Genes in rows", "Genes in columns"], callback=self.invalidate) self.clear_cache_btn = gui.button(self.controlArea, self, "Clear cache", autoDefault=False, callback=self.clear_cache) gui.rubber(self.controlArea) self.commit_button = gui.auto_commit(self.controlArea, self, "auto_commit", "&Commit", box=False) # Experiment Section label = QLabel("Available projects:") my_font = QFont() my_font.setBold(True) label.setFont(my_font) self.mainArea.layout().addWidget(label) self.filter = gui.lineEdit(self.mainArea, self, "searchString", "Filter:", callbackOnType=True, callback=self.search_update) self.experimentsWidget = QTreeWidget(alternatingRowColors=True, rootIsDecorated=False, uniformRowHeights=True, sortingEnabled=True) self.experimentsWidget.setItemDelegateForColumn( 0, gui.IndicatorItemDelegate(self, role=Qt.DisplayRole)) self.experimentsWidget.selectionModel().selectionChanged.connect( self.on_selection_changed) self.experimentsWidget.setHeaderLabels(self.headerLabels) self.mainArea.layout().addWidget(self.experimentsWidget) self.sign_in(silent=True) self.sizeHint()