def GetDACC(input_data, **kwargs): """ ################################################################# Make DACC dictionary. :param input_data: file object or sequence list. :param phyche_index: physicochemical properties list. :param all_property: bool, choose all physicochemical properties or not. :param extra_phyche_index: dict, the key is the dinucleotide (string), and its corresponding value is a list. It means user-defined phyche_index. ################################################################# """ if "k" in kwargs: k = kwargs["k"] else: k = 2 if "lag" in kwargs: lag = kwargs["lag"] else: lag = 2 if "phyche_index" in kwargs: phyche_index = kwargs["phyche_index"] else: phyche_index = None if "all_property" in kwargs: all_property = kwargs["all_property"] else: all_property = False if "extra_phyche_index" in kwargs: extra_phyche_index = kwargs["extra_phyche_index"] else: extra_phyche_index = None input_data = [input_data] sequence_list, phyche_value = ReadyAcc(input_data, k, phyche_index, all_property, extra_phyche_index) from PyDNAacutil import MakeACVector, MakeCCVector zipped = list( zip( MakeACVector(sequence_list, lag, phyche_value, k), MakeCCVector(sequence_list, lag, phyche_value, k), )) vec = [reduce(lambda x, y: x + y, e) for e in zipped] dict_keys = ["DACC_%s" % i for i in range(1, len(vec[0]) + 1)] res = dict(zip(dict_keys, vec[0])) return res
def GetDAC(input_data, **kwargs): """ ################################################################# Make DAC dictionary. :param input_data: file object or sequence list. :param phyche_index: physicochemical properties list. :param all_property: bool, choose all physicochemical properties or not. :param extra_phyche_index: dict, the key is the dinucleotide (string), and its corresponding value is a list. It means user-defined phyche_index. ################################################################# """ if 'k' in kwargs: k = kwargs['k'] else: k = 2 if 'lag' in kwargs: lag = kwargs['lag'] else: lag = 2 if 'phyche_index' in kwargs: phyche_index = kwargs['phyche_index'] else: phyche_index = None if 'all_property' in kwargs: all_property = kwargs['all_property'] else: all_property = False if 'extra_phyche_index' in kwargs: extra_phyche_index = kwargs['extra_phyche_index'] else: extra_phyche_index = None input_data = [input_data] sequence_list, phyche_value = ReadyAcc(input_data, k, phyche_index, all_property, extra_phyche_index) from PyDNAacutil import MakeACVector vec = MakeACVector(sequence_list, lag, phyche_value, k) dict_keys = ['DAC_%s' % i for i in range(1, len(vec[0]) + 1)] res = dict(zip(dict_keys, vec[0])) return res